Wall clock time and date at job start Mon Mar 30 2020 00:55:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46505 * 120.00093 * 2 1 4 4 C 1.53008 * 109.46856 * 269.99659 * 3 2 1 5 5 O 1.42895 * 109.47006 * 64.99442 * 4 3 2 6 6 C 1.35951 * 116.99758 * 179.97438 * 5 4 3 7 7 C 1.38708 * 120.03040 * 0.28885 * 6 5 4 8 8 C 1.38147 * 119.96935 * 180.25012 * 7 6 5 9 9 C 1.38455 * 120.02958 * 359.46222 * 8 7 6 10 10 F 1.35101 * 119.97206 * 180.29906 * 9 8 7 11 11 C 1.38452 * 120.06193 * 0.28172 * 9 8 7 12 12 C 1.38156 * 120.03063 * 359.97438 * 11 9 8 13 13 C 1.34778 * 120.00211 * 179.97438 * 2 1 3 14 14 O 1.21683 * 120.00013 * 180.02562 * 13 2 1 15 15 C 1.46375 * 119.99865 * 0.02562 * 13 2 1 16 16 H 1.07999 * 119.99690 * 359.97438 * 15 13 2 17 17 C 1.40044 * 120.00218 * 179.97438 * 15 13 2 18 18 N 1.30680 * 119.99680 * 359.97438 * 17 15 13 19 19 Si 1.86795 * 120.00282 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.46992 * 59.99934 * 19 17 15 21 21 H 1.48505 * 109.47160 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47142 * 300.00065 * 19 17 15 23 23 H 1.09002 * 109.46361 * 90.00495 * 1 2 3 24 24 H 1.08994 * 109.47574 * 210.00257 * 1 2 3 25 25 H 1.09000 * 109.47150 * 330.00768 * 1 2 3 26 26 H 1.08997 * 109.47700 * 149.99964 * 3 2 1 27 27 H 1.08996 * 109.47102 * 29.99204 * 3 2 1 28 28 H 1.09005 * 109.46539 * 304.99929 * 4 3 2 29 29 H 1.08995 * 109.46786 * 185.00066 * 4 3 2 30 30 H 1.07998 * 120.01328 * 0.02562 * 7 6 5 31 31 H 1.08002 * 119.98838 * 179.74746 * 8 7 6 32 32 H 1.07997 * 119.98751 * 179.97438 * 11 9 8 33 33 H 1.07999 * 120.02057 * 180.02562 * 12 11 9 34 34 H 0.96999 * 119.99695 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4526 1.7104 -1.4426 5 8 1.2061 1.9933 -2.0815 6 6 1.2556 2.4020 -3.3772 7 6 2.4783 2.5220 -4.0211 8 6 2.5274 2.9425 -5.3361 9 6 1.3562 3.2333 -6.0148 10 9 1.4052 3.6385 -7.3027 11 6 0.1347 3.1088 -5.3750 12 6 0.0829 2.6937 -4.0583 13 6 2.1389 -1.1672 0.0005 14 8 3.3557 -1.1671 0.0010 15 6 1.4070 -2.4348 0.0005 16 1 0.3271 -2.4348 0.0005 17 6 2.1072 -3.6477 0.0005 18 7 3.4140 -3.6476 0.0000 19 14 1.1733 -5.2654 0.0012 20 1 0.3191 -5.3443 -1.2109 21 1 2.1383 -6.3941 0.0018 22 1 0.3200 -5.3438 1.2141 23 1 -0.3632 -0.0001 -1.0277 24 1 -0.3634 -0.8899 0.5138 25 1 -0.3633 0.8900 0.5137 26 1 3.1499 1.1385 0.5138 27 1 1.6084 2.0284 0.5137 28 1 2.9643 0.9129 -1.9815 29 1 3.0733 2.6063 -1.4439 30 1 3.3917 2.2904 -3.4934 31 1 3.4796 3.0399 -5.8365 32 1 -0.7781 3.3364 -5.9054 33 1 -0.8700 2.5963 -3.5595 34 1 3.8990 -4.4877 0.0004 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274052160.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:20 Heat of formation + Delta-G solvation = -91.062310 kcal Electronic energy + Delta-G solvation = -19730.648422 eV Core-core repulsion = 16350.702584 eV Total energy + Delta-G solvation = -3379.945837 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -48.82432 -39.98018 -37.90792 -36.87402 -33.95137 -32.47123 -31.34647 -30.32024 -28.79990 -26.22522 -25.33720 -23.62874 -22.52740 -21.68030 -19.15976 -18.28254 -17.33323 -16.60041 -16.29643 -15.91156 -15.57611 -15.46253 -14.73229 -14.47279 -14.16047 -14.09081 -13.70089 -13.40933 -13.04481 -12.60660 -12.39670 -12.05065 -11.73831 -11.53526 -11.35533 -11.27331 -11.16764 -10.93153 -10.71883 -10.51591 -10.26540 -10.14647 -9.22832 -8.87642 -8.02910 -7.65141 -7.28545 -6.22997 -4.67903 1.12573 1.23246 3.13806 3.19020 3.20611 3.37690 3.57539 4.06581 4.29329 4.49809 4.55356 4.66494 4.74614 5.09133 5.24304 5.42546 5.44656 5.57242 5.60317 5.79038 5.82804 6.08469 6.08885 6.11039 6.13312 6.24377 6.33174 6.52423 6.63836 6.71250 7.42053 7.52506 7.57271 8.09780 8.31352 8.99164 9.36930 10.52728 10.71514 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.023950 B = 0.004304 C = 0.004111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.829524 B = 6503.864769 C = 6808.821651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.109 3.891 2 N -0.645 5.645 3 C 0.131 3.869 4 C 0.042 3.958 5 O -0.301 6.301 6 C 0.135 3.865 7 C -0.183 4.183 8 C -0.111 4.111 9 C 0.045 3.955 10 F -0.146 7.146 11 C -0.114 4.114 12 C -0.130 4.130 13 C 0.555 3.445 14 O -0.581 6.581 15 C -0.542 4.542 16 H 0.072 0.928 17 C 0.087 3.913 18 N -0.767 5.767 19 Si 0.907 3.093 20 H -0.268 1.268 21 H -0.280 1.280 22 H -0.267 1.267 23 H 0.034 0.966 24 H 0.068 0.932 25 H 0.040 0.960 26 H 0.095 0.905 27 H 0.065 0.935 28 H 0.071 0.929 29 H 0.059 0.941 30 H 0.139 0.861 31 H 0.135 0.865 32 H 0.138 0.862 33 H 0.140 0.860 34 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.496 12.013 -6.663 14.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.383 5.383 3 C 0.006 3.994 4 C -0.034 4.034 5 O -0.214 6.214 6 C 0.088 3.912 7 C -0.202 4.202 8 C -0.130 4.130 9 C 0.026 3.974 10 F -0.125 7.125 11 C -0.132 4.132 12 C -0.149 4.149 13 C 0.362 3.638 14 O -0.464 6.464 15 C -0.578 4.578 16 H 0.091 0.909 17 C -0.133 4.133 18 N -0.396 5.396 19 Si 0.731 3.269 20 H -0.192 1.192 21 H -0.205 1.205 22 H -0.192 1.192 23 H 0.052 0.948 24 H 0.087 0.913 25 H 0.059 0.941 26 H 0.113 0.887 27 H 0.083 0.917 28 H 0.089 0.911 29 H 0.077 0.923 30 H 0.156 0.844 31 H 0.153 0.847 32 H 0.156 0.844 33 H 0.158 0.842 34 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.808 11.870 -6.553 14.386 hybrid contribution -0.256 -0.715 -0.410 0.863 sum -5.064 11.156 -6.963 14.092 Atomic orbital electron populations 1.21361 0.81724 1.00634 0.99864 1.47934 1.05508 1.04840 1.79968 1.21087 0.99199 0.87419 0.91702 1.23637 0.83881 0.99578 0.96312 1.86158 1.33948 1.80072 1.21200 1.19163 0.93623 0.93425 0.84970 1.21221 0.97931 1.05493 0.95568 1.20918 0.97580 0.99841 0.94635 1.17533 0.94625 1.05571 0.79693 1.91463 1.97340 1.88681 1.35047 1.20899 0.96833 1.00832 0.94679 1.20288 0.97424 1.03559 0.93585 1.18268 0.86948 0.82324 0.76281 1.90586 1.14012 1.86354 1.55466 1.20984 0.93757 0.89223 1.53878 0.90948 1.25740 0.94622 1.00337 0.92556 1.70010 1.07071 1.27422 1.35104 0.86448 0.79876 0.81039 0.79517 1.19236 1.20539 1.19211 0.94755 0.91331 0.94142 0.88658 0.91713 0.91099 0.92324 0.84362 0.84744 0.84391 0.84234 0.92047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.02 9.79 59.85 0.59 2.61 16 2 N -0.64 -14.31 2.84 -183.25 -0.52 -14.83 16 3 C 0.13 2.40 5.86 -4.03 -0.02 2.37 16 4 C 0.04 0.70 5.08 37.16 0.19 0.89 16 5 O -0.30 -4.92 9.69 -19.58 -0.19 -5.11 16 6 C 0.14 1.98 6.69 -39.23 -0.26 1.72 16 7 C -0.18 -2.50 9.04 -39.44 -0.36 -2.86 16 8 C -0.11 -1.39 10.02 -39.53 -0.40 -1.78 16 9 C 0.05 0.57 7.30 -39.42 -0.29 0.29 16 10 F -0.15 -1.90 17.27 2.25 0.04 -1.86 16 11 C -0.11 -1.33 10.02 -39.53 -0.40 -1.73 16 12 C -0.13 -1.65 9.99 -39.44 -0.39 -2.05 16 13 C 0.56 15.46 7.61 -12.99 -0.10 15.36 16 14 O -0.58 -18.15 14.60 5.20 0.08 -18.08 16 15 C -0.54 -15.05 8.74 -35.63 -0.31 -15.36 16 16 H 0.07 1.84 6.00 -52.49 -0.31 1.53 16 17 C 0.09 2.40 5.50 -17.36 -0.10 2.31 16 18 N -0.77 -22.66 11.83 55.55 0.66 -22.00 16 19 Si 0.91 19.93 29.56 -169.99 -5.02 14.90 16 20 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 21 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 22 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 23 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.07 1.31 6.09 -51.93 -0.32 1.00 16 25 H 0.04 0.63 7.89 -51.93 -0.41 0.22 16 26 H 0.10 1.85 7.42 -51.93 -0.39 1.47 16 27 H 0.06 1.00 7.89 -51.93 -0.41 0.59 16 28 H 0.07 1.37 7.65 -51.93 -0.40 0.97 16 29 H 0.06 0.79 7.67 -51.93 -0.40 0.39 16 30 H 0.14 1.79 6.30 -52.49 -0.33 1.46 16 31 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 32 H 0.14 1.26 8.06 -52.49 -0.42 0.84 16 33 H 0.14 1.55 8.06 -52.49 -0.42 1.13 16 34 H 0.27 7.23 8.29 -40.82 -0.34 6.89 16 LS Contribution 300.25 15.07 4.52 4.52 Total: -1.00 -33.21 300.25 -6.07 -39.28 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: -3.79 Total: 1.39 kcal Atomic # 6 Polarization: 3.62 SS G_CDS: -1.85 Total: 1.77 kcal Atomic # 7 Polarization: -36.97 SS G_CDS: 0.14 Total: -36.83 kcal Atomic # 8 Polarization: -23.07 SS G_CDS: -0.11 Total: -23.18 kcal Atomic # 9 Polarization: -1.90 SS G_CDS: 0.04 Total: -1.86 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.02 Total: 14.90 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -33.21 -6.07 -39.28 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274052160.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.778 kcal (2) G-P(sol) polarization free energy of solvation -33.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds