Wall clock time and date at job start Mon Mar 30 2020 00:55:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46505 * 120.00093 * 2 1 4 4 C 1.53008 * 109.46856 * 269.99659 * 3 2 1 5 5 O 1.42895 * 109.47006 * 64.99442 * 4 3 2 6 6 C 1.35951 * 116.99758 * 179.97438 * 5 4 3 7 7 C 1.38708 * 120.03040 * 0.28885 * 6 5 4 8 8 C 1.38147 * 119.96935 * 180.25012 * 7 6 5 9 9 C 1.38455 * 120.02958 * 359.46222 * 8 7 6 10 10 F 1.35101 * 119.97206 * 180.29906 * 9 8 7 11 11 C 1.38452 * 120.06193 * 0.28172 * 9 8 7 12 12 C 1.38156 * 120.03063 * 359.97438 * 11 9 8 13 13 C 1.34778 * 120.00211 * 179.97438 * 2 1 3 14 14 O 1.21683 * 120.00013 * 180.02562 * 13 2 1 15 15 C 1.46375 * 119.99865 * 0.02562 * 13 2 1 16 16 H 1.07999 * 119.99690 * 359.97438 * 15 13 2 17 17 C 1.40044 * 120.00218 * 179.97438 * 15 13 2 18 18 N 1.30680 * 119.99680 * 359.97438 * 17 15 13 19 19 Si 1.86795 * 120.00282 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.46992 * 59.99934 * 19 17 15 21 21 H 1.48505 * 109.47160 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47142 * 300.00065 * 19 17 15 23 23 H 1.09002 * 109.46361 * 90.00495 * 1 2 3 24 24 H 1.08994 * 109.47574 * 210.00257 * 1 2 3 25 25 H 1.09000 * 109.47150 * 330.00768 * 1 2 3 26 26 H 1.08997 * 109.47700 * 149.99964 * 3 2 1 27 27 H 1.08996 * 109.47102 * 29.99204 * 3 2 1 28 28 H 1.09005 * 109.46539 * 304.99929 * 4 3 2 29 29 H 1.08995 * 109.46786 * 185.00066 * 4 3 2 30 30 H 1.07998 * 120.01328 * 0.02562 * 7 6 5 31 31 H 1.08002 * 119.98838 * 179.74746 * 8 7 6 32 32 H 1.07997 * 119.98751 * 179.97438 * 11 9 8 33 33 H 1.07999 * 120.02057 * 180.02562 * 12 11 9 34 34 H 0.96999 * 119.99695 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4526 1.7104 -1.4426 5 8 1.2061 1.9933 -2.0815 6 6 1.2556 2.4020 -3.3772 7 6 2.4783 2.5220 -4.0211 8 6 2.5274 2.9425 -5.3361 9 6 1.3562 3.2333 -6.0148 10 9 1.4052 3.6385 -7.3027 11 6 0.1347 3.1088 -5.3750 12 6 0.0829 2.6937 -4.0583 13 6 2.1389 -1.1672 0.0005 14 8 3.3557 -1.1671 0.0010 15 6 1.4070 -2.4348 0.0005 16 1 0.3271 -2.4348 0.0005 17 6 2.1072 -3.6477 0.0005 18 7 3.4140 -3.6476 0.0000 19 14 1.1733 -5.2654 0.0012 20 1 0.3191 -5.3443 -1.2109 21 1 2.1383 -6.3941 0.0018 22 1 0.3200 -5.3438 1.2141 23 1 -0.3632 -0.0001 -1.0277 24 1 -0.3634 -0.8899 0.5138 25 1 -0.3633 0.8900 0.5137 26 1 3.1499 1.1385 0.5138 27 1 1.6084 2.0284 0.5137 28 1 2.9643 0.9129 -1.9815 29 1 3.0733 2.6063 -1.4439 30 1 3.3917 2.2904 -3.4934 31 1 3.4796 3.0399 -5.8365 32 1 -0.7781 3.3364 -5.9054 33 1 -0.8700 2.5963 -3.5595 34 1 3.8990 -4.4877 0.0004 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274052160.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:20 Heat of formation + Delta-G solvation = -112.258393 kcal Electronic energy + Delta-G solvation = -19731.567553 eV Core-core repulsion = 16350.702584 eV Total energy + Delta-G solvation = -3380.864968 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.83169 -41.11964 -39.66072 -38.16275 -35.80204 -34.58154 -32.39532 -31.66376 -29.97636 -28.22097 -26.91362 -24.96343 -23.66575 -22.92969 -20.97378 -19.41343 -18.51258 -18.21759 -17.67183 -17.48789 -17.22777 -16.53806 -16.10017 -15.84019 -15.68576 -15.63349 -14.86996 -14.55041 -14.36017 -14.06874 -13.63583 -13.42119 -13.34083 -13.21044 -13.05752 -12.87085 -12.68374 -12.60838 -12.11749 -12.06125 -11.81409 -11.71725 -10.90996 -10.20255 -9.79576 -9.13190 -9.07585 -8.28296 -6.83045 0.14820 0.19428 1.40067 1.42839 1.54239 2.16407 2.25094 2.46992 2.55984 2.88988 3.30155 3.59186 3.69608 3.80010 4.05436 4.10584 4.15255 4.27617 4.34153 4.49889 4.64582 4.75084 4.82824 4.90330 4.97991 5.09817 5.11514 5.12805 5.25504 5.38215 5.70011 5.77085 6.14735 6.33751 6.44174 6.88989 7.41040 8.47148 8.67576 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.023950 B = 0.004304 C = 0.004111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.829524 B = 6503.864769 C = 6808.821651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.109 3.891 2 N -0.647 5.647 3 C 0.126 3.874 4 C 0.055 3.945 5 O -0.310 6.310 6 C 0.109 3.891 7 C -0.193 4.193 8 C -0.114 4.114 9 C 0.038 3.962 10 F -0.147 7.147 11 C -0.106 4.106 12 C -0.129 4.129 13 C 0.539 3.461 14 O -0.630 6.630 15 C -0.570 4.570 16 H 0.090 0.910 17 C 0.030 3.970 18 N -0.821 5.821 19 Si 0.992 3.008 20 H -0.257 1.257 21 H -0.275 1.275 22 H -0.252 1.252 23 H 0.037 0.963 24 H 0.060 0.940 25 H 0.077 0.923 26 H 0.076 0.924 27 H 0.102 0.898 28 H 0.034 0.966 29 H 0.091 0.909 30 H 0.138 0.862 31 H 0.152 0.848 32 H 0.167 0.833 33 H 0.157 0.843 34 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.751 12.484 -7.229 16.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 N -0.383 5.383 3 C 0.003 3.997 4 C -0.021 4.021 5 O -0.224 6.224 6 C 0.063 3.937 7 C -0.212 4.212 8 C -0.133 4.133 9 C 0.018 3.982 10 F -0.126 7.126 11 C -0.125 4.125 12 C -0.148 4.148 13 C 0.345 3.655 14 O -0.517 6.517 15 C -0.607 4.607 16 H 0.108 0.892 17 C -0.185 4.185 18 N -0.450 5.450 19 Si 0.811 3.189 20 H -0.181 1.181 21 H -0.200 1.200 22 H -0.176 1.176 23 H 0.055 0.945 24 H 0.079 0.921 25 H 0.096 0.904 26 H 0.094 0.906 27 H 0.120 0.880 28 H 0.052 0.948 29 H 0.109 0.891 30 H 0.156 0.844 31 H 0.169 0.831 32 H 0.185 0.815 33 H 0.175 0.825 34 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -7.109 12.398 -7.127 15.970 hybrid contribution 0.417 -0.720 -0.301 0.885 sum -6.692 11.679 -7.428 15.374 Atomic orbital electron populations 1.21483 0.79422 1.02091 1.00458 1.47791 1.07079 1.04774 1.78630 1.21276 0.98653 0.86572 0.93241 1.23324 0.84418 0.99730 0.94655 1.86093 1.33313 1.80732 1.22253 1.19470 0.94799 0.94850 0.84584 1.21301 0.97817 1.05936 0.96169 1.21115 0.98609 0.99304 0.94257 1.17739 0.95171 1.05529 0.79719 1.91464 1.97375 1.88686 1.35110 1.21201 0.97609 0.99433 0.94249 1.20535 0.97468 1.02894 0.93886 1.18595 0.86621 0.84234 0.76008 1.90536 1.16023 1.87598 1.57557 1.21522 0.94877 0.90043 1.54227 0.89156 1.26946 0.95481 1.04814 0.91255 1.70180 1.09421 1.28868 1.36549 0.85158 0.78331 0.75098 0.80293 1.18077 1.19982 1.17636 0.94482 0.92092 0.90433 0.90571 0.87970 0.94797 0.89071 0.84441 0.83054 0.81512 0.82539 0.91684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 3.87 9.79 127.77 1.25 5.13 16 2 N -0.65 -28.72 2.84 -851.88 -2.42 -31.13 16 3 C 0.13 4.59 5.86 86.38 0.51 5.09 16 4 C 0.06 1.82 5.08 71.98 0.37 2.19 16 5 O -0.31 -9.82 9.69 -92.99 -0.90 -10.72 16 6 C 0.11 3.08 6.69 22.50 0.15 3.24 16 7 C -0.19 -5.18 9.04 22.36 0.20 -4.98 16 8 C -0.11 -2.73 10.02 22.30 0.22 -2.50 16 9 C 0.04 0.89 7.30 22.37 0.16 1.05 16 10 F -0.15 -3.53 17.27 44.97 0.78 -2.75 16 11 C -0.11 -2.22 10.02 22.30 0.22 -2.00 16 12 C -0.13 -3.02 9.99 22.36 0.22 -2.80 16 13 C 0.54 30.85 7.61 86.36 0.66 31.51 16 14 O -0.63 -41.18 14.60 -4.29 -0.06 -41.25 16 15 C -0.57 -32.06 8.74 24.83 0.22 -31.85 16 16 H 0.09 4.56 6.00 -2.91 -0.02 4.55 16 17 C 0.03 1.68 5.50 85.30 0.47 2.15 16 18 N -0.82 -49.94 11.83 21.84 0.26 -49.69 16 19 Si 0.99 40.78 29.56 68.60 2.03 42.81 16 20 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 21 H -0.28 -10.95 7.11 99.48 0.71 -10.24 16 22 H -0.25 -9.70 7.11 99.48 0.71 -8.99 16 23 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 24 H 0.06 2.25 6.09 -2.39 -0.01 2.24 16 25 H 0.08 2.18 7.89 -2.39 -0.02 2.17 16 26 H 0.08 3.05 7.42 -2.39 -0.02 3.03 16 27 H 0.10 2.91 7.89 -2.39 -0.02 2.90 16 28 H 0.03 1.36 7.65 -2.38 -0.02 1.35 16 29 H 0.09 2.38 7.67 -2.39 -0.02 2.36 16 30 H 0.14 3.60 6.30 -2.91 -0.02 3.58 16 31 H 0.15 2.97 8.06 -2.91 -0.02 2.95 16 32 H 0.17 2.45 8.06 -2.91 -0.02 2.43 16 33 H 0.16 3.04 8.06 -2.91 -0.02 3.02 16 34 H 0.27 15.14 8.29 -92.71 -0.77 14.37 16 Total: -1.00 -74.27 300.25 5.45 -68.82 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: 1.12 Total: 17.68 kcal Atomic # 6 Polarization: 1.58 SS G_CDS: 4.65 Total: 6.23 kcal Atomic # 7 Polarization: -78.66 SS G_CDS: -2.16 Total: -80.82 kcal Atomic # 8 Polarization: -51.00 SS G_CDS: -0.96 Total: -51.96 kcal Atomic # 9 Polarization: -3.53 SS G_CDS: 0.78 Total: -2.75 kcal Atomic # 14 Polarization: 40.78 SS G_CDS: 2.03 Total: 42.81 kcal Total: -74.27 5.45 -68.82 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274052160.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.441 kcal (2) G-P(sol) polarization free energy of solvation -74.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds