Wall clock time and date at job start Mon Mar 30 2020 00:28:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 109.47232 * 2 1 4 4 N 1.46498 * 109.47344 * 120.00569 * 2 1 3 5 5 C 1.34780 * 119.99891 * 275.00004 * 4 2 1 6 6 O 1.21689 * 119.99940 * 359.97438 * 5 4 2 7 7 C 1.46376 * 120.00217 * 179.97438 * 5 4 2 8 8 H 1.07998 * 120.00088 * 0.02562 * 7 5 4 9 9 C 1.40044 * 119.99884 * 179.97438 * 7 5 4 10 10 N 1.30669 * 120.00116 * 0.02562 * 9 7 5 11 11 Si 1.86803 * 119.99833 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47235 * 60.00264 * 11 9 7 13 13 H 1.48498 * 109.47346 * 179.97438 * 11 9 7 14 14 H 1.48502 * 109.47070 * 300.00172 * 11 9 7 15 15 C 1.53001 * 109.47062 * 240.00319 * 2 1 3 16 16 H 1.08999 * 109.47164 * 64.99975 * 15 2 1 17 17 O 1.42903 * 109.47171 * 304.99710 * 15 2 1 18 18 C 1.50707 * 109.47316 * 185.00393 * 15 2 1 19 19 C 1.38245 * 119.97435 * 84.72034 * 18 15 2 20 20 C 1.38196 * 120.02027 * 179.77090 * 19 18 15 21 21 C 1.38461 * 119.97678 * 0.50700 * 20 19 18 22 22 F 1.35101 * 120.02816 * 179.77154 * 21 20 19 23 23 C 1.38456 * 119.94456 * 359.74744 * 21 20 19 24 24 C 1.38191 * 119.97928 * 359.97438 * 23 21 20 25 25 H 1.08997 * 109.46934 * 299.99794 * 1 2 3 26 26 H 1.09003 * 109.46921 * 59.99672 * 1 2 3 27 27 H 1.09003 * 109.47365 * 179.97438 * 1 2 3 28 28 H 0.97000 * 120.00590 * 94.99321 * 4 2 1 29 29 H 0.97009 * 119.99939 * 179.97438 * 10 9 7 30 30 H 0.96700 * 114.00311 * 300.00378 * 17 15 2 31 31 H 1.08001 * 119.98803 * 0.02600 * 19 18 15 32 32 H 1.08001 * 120.01308 * 180.26000 * 20 19 18 33 33 H 1.08009 * 120.00937 * 179.97438 * 23 21 20 34 34 H 1.08004 * 119.99096 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1471 -0.0184 2.3571 6 8 1.8581 1.1624 2.4117 7 6 2.6345 -0.7086 3.5524 8 1 2.8914 -1.7565 3.5038 9 6 2.7688 -0.0099 4.7586 10 7 2.4584 1.2581 4.8172 11 14 3.3915 -0.8906 6.2838 12 1 4.7526 -1.4253 6.0256 13 1 3.4427 0.0638 7.4203 14 1 2.4749 -2.0102 6.6178 15 6 2.0400 -0.7212 -1.2493 16 1 1.7516 -0.1582 -2.1370 17 8 1.4702 -2.0303 -1.3095 18 6 3.5419 -0.8295 -1.1890 19 6 4.1321 -1.8729 -0.5004 20 6 5.5092 -1.9758 -0.4485 21 6 6.2980 -1.0274 -1.0774 22 9 7.6445 -1.1244 -1.0234 23 6 5.7058 0.0201 -1.7623 24 6 4.3284 0.1177 -1.8178 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 2.2490 -1.6319 1.1525 29 1 2.5511 1.7420 5.6529 30 1 1.6858 -2.5885 -0.5499 31 1 3.5166 -2.6102 -0.0065 32 1 5.9701 -2.7933 0.0859 33 1 6.3201 0.7606 -2.2529 34 1 3.8662 0.9345 -2.3522 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274205699.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:28:05 Heat of formation + Delta-G solvation = -115.147818 kcal Electronic energy + Delta-G solvation = -20402.862717 eV Core-core repulsion = 17021.872454 eV Total energy + Delta-G solvation = -3380.990263 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.79069 -39.82534 -37.68653 -36.40017 -33.49259 -32.34976 -31.24494 -30.71588 -29.68944 -26.13842 -25.70364 -23.01061 -22.00917 -20.98532 -19.33905 -18.03789 -17.48472 -16.70695 -16.37054 -15.59407 -15.47144 -15.40945 -14.67468 -14.37933 -13.73756 -13.64216 -13.46907 -13.24238 -12.87273 -12.77869 -12.39723 -12.25867 -11.62386 -11.59309 -11.47301 -11.02506 -10.99981 -10.93376 -10.55270 -10.48604 -10.26149 -9.88501 -9.01509 -8.87619 -8.43128 -7.66766 -7.58154 -6.21542 -4.67489 1.21677 1.32986 3.13335 3.18690 3.19959 3.63410 4.06773 4.33750 4.46407 4.55702 4.63001 4.74719 4.80658 4.95105 5.20488 5.29757 5.39798 5.66970 5.70692 5.93908 5.96214 5.96909 6.13390 6.18699 6.25183 6.30236 6.51125 6.62164 6.82802 6.95865 7.39709 7.60465 7.83727 8.02891 8.26548 8.99457 9.45590 10.56686 10.75159 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.015231 B = 0.007011 C = 0.005437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1837.892390 B = 3992.583656 C = 5149.051892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.125 3.875 3 H 0.084 0.916 4 N -0.760 5.760 5 C 0.559 3.441 6 O -0.578 6.578 7 C -0.545 4.545 8 H 0.065 0.935 9 C 0.089 3.911 10 N -0.767 5.767 11 Si 0.905 3.095 12 H -0.268 1.268 13 H -0.280 1.280 14 H -0.268 1.268 15 C 0.141 3.859 16 H 0.113 0.887 17 O -0.552 6.552 18 C -0.110 4.110 19 C -0.070 4.070 20 C -0.146 4.146 21 C 0.092 3.908 22 F -0.144 7.144 23 C -0.152 4.152 24 C -0.083 4.083 25 H 0.063 0.937 26 H 0.048 0.952 27 H 0.055 0.945 28 H 0.372 0.628 29 H 0.269 0.731 30 H 0.372 0.628 31 H 0.128 0.872 32 H 0.135 0.865 33 H 0.133 0.867 34 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.196 -5.937 -11.585 13.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.018 3.982 3 H 0.102 0.898 4 N -0.416 5.416 5 C 0.363 3.637 6 O -0.460 6.460 7 C -0.582 4.582 8 H 0.083 0.917 9 C -0.131 4.131 10 N -0.396 5.396 11 Si 0.730 3.270 12 H -0.193 1.193 13 H -0.206 1.206 14 H -0.193 1.193 15 C 0.081 3.919 16 H 0.130 0.870 17 O -0.358 6.358 18 C -0.111 4.111 19 C -0.088 4.088 20 C -0.165 4.165 21 C 0.072 3.928 22 F -0.123 7.123 23 C -0.171 4.171 24 C -0.101 4.101 25 H 0.082 0.918 26 H 0.067 0.933 27 H 0.074 0.926 28 H 0.204 0.796 29 H 0.079 0.921 30 H 0.220 0.780 31 H 0.146 0.854 32 H 0.153 0.847 33 H 0.151 0.849 34 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 2.780 -4.643 -11.985 13.150 hybrid contribution 1.015 -1.016 1.408 2.011 sum 3.794 -5.659 -10.577 12.582 Atomic orbital electron populations 1.22062 0.95885 1.01694 1.01468 1.21160 0.93889 0.97973 0.85164 0.89758 1.46206 1.73401 1.12333 1.09677 1.18152 0.77704 0.86364 0.81478 1.90601 1.54730 1.16378 1.84304 1.20813 1.47029 0.97013 0.93382 0.91654 1.25681 0.93329 0.94457 0.99669 1.70002 1.35063 1.08148 1.26352 0.86472 0.79896 0.79764 0.80858 1.19309 1.20555 1.19280 1.21244 0.86821 0.84547 0.99288 0.86969 1.86572 1.75918 1.24860 1.48474 1.20547 0.96954 0.95703 0.97903 1.20650 0.93728 0.97736 0.96731 1.21065 0.94117 0.99852 1.01430 1.17696 0.76794 0.97364 1.00898 1.91477 1.29738 1.96086 1.94986 1.21049 0.95728 0.98403 1.01924 1.20774 0.92477 0.98215 0.98617 0.91843 0.93282 0.92623 0.79610 0.92058 0.77968 0.85439 0.84740 0.84944 0.85047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.59 9.29 37.16 0.35 -2.24 16 2 C 0.12 2.21 2.47 -67.93 -0.17 2.04 16 3 H 0.08 1.71 7.58 -51.93 -0.39 1.32 16 4 N -0.76 -15.51 4.26 -55.22 -0.24 -15.75 16 5 C 0.56 15.15 7.71 -12.99 -0.10 15.05 16 6 O -0.58 -18.05 14.68 5.20 0.08 -17.98 16 7 C -0.55 -14.93 9.54 -35.63 -0.34 -15.27 16 8 H 0.07 1.62 7.85 -52.49 -0.41 1.21 16 9 C 0.09 2.43 5.50 -17.37 -0.10 2.34 16 10 N -0.77 -22.73 11.83 55.55 0.66 -22.07 16 11 Si 0.91 19.93 29.56 -169.99 -5.02 14.91 16 12 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 13 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 14 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 15 C 0.14 1.94 3.12 -27.88 -0.09 1.85 16 16 H 0.11 1.36 8.05 -51.93 -0.42 0.94 16 17 O -0.55 -7.31 12.26 -35.23 -0.43 -7.74 16 18 C -0.11 -1.56 4.78 -104.61 -0.50 -2.05 16 19 C -0.07 -0.97 8.16 -39.59 -0.32 -1.29 16 20 C -0.15 -2.03 10.03 -39.51 -0.40 -2.42 16 21 C 0.09 1.32 7.30 -39.42 -0.29 1.04 16 22 F -0.14 -2.12 17.27 2.25 0.04 -2.08 16 23 C -0.15 -2.03 10.03 -39.52 -0.40 -2.43 16 24 C -0.08 -1.10 9.68 -39.60 -0.38 -1.48 16 25 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 26 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 27 H 0.05 0.89 7.56 -51.93 -0.39 0.50 16 28 H 0.37 6.53 5.59 -40.82 -0.23 6.30 16 29 H 0.27 7.27 8.29 -40.82 -0.34 6.93 16 30 H 0.37 4.21 6.25 45.56 0.28 4.49 16 31 H 0.13 1.50 5.62 -52.49 -0.29 1.21 16 32 H 0.13 1.62 8.06 -52.49 -0.42 1.20 16 33 H 0.13 1.47 8.06 -52.48 -0.42 1.05 16 34 H 0.13 1.42 8.06 -52.48 -0.42 1.00 16 LS Contribution 296.02 15.07 4.46 4.46 Total: -1.00 -33.89 296.02 -6.29 -40.18 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: -3.10 Total: 10.93 kcal Atomic # 6 Polarization: -2.13 SS G_CDS: -2.73 Total: -4.86 kcal Atomic # 7 Polarization: -38.24 SS G_CDS: 0.42 Total: -37.82 kcal Atomic # 8 Polarization: -25.36 SS G_CDS: -0.36 Total: -25.72 kcal Atomic # 9 Polarization: -2.12 SS G_CDS: 0.04 Total: -2.08 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.02 Total: 14.91 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -33.89 -6.29 -40.18 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274205699.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.965 kcal (2) G-P(sol) polarization free energy of solvation -33.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds