Wall clock time and date at job start Mon Mar 30 2020 00:28:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 109.47232 * 2 1 4 4 N 1.46498 * 109.47344 * 120.00569 * 2 1 3 5 5 C 1.34780 * 119.99891 * 275.00004 * 4 2 1 6 6 O 1.21689 * 119.99940 * 359.97438 * 5 4 2 7 7 C 1.46376 * 120.00217 * 179.97438 * 5 4 2 8 8 H 1.07998 * 120.00088 * 0.02562 * 7 5 4 9 9 C 1.40044 * 119.99884 * 179.97438 * 7 5 4 10 10 N 1.30669 * 120.00116 * 0.02562 * 9 7 5 11 11 Si 1.86803 * 119.99833 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47235 * 60.00264 * 11 9 7 13 13 H 1.48498 * 109.47346 * 179.97438 * 11 9 7 14 14 H 1.48502 * 109.47070 * 300.00172 * 11 9 7 15 15 C 1.53001 * 109.47062 * 240.00319 * 2 1 3 16 16 H 1.08999 * 109.47164 * 64.99975 * 15 2 1 17 17 O 1.42903 * 109.47171 * 304.99710 * 15 2 1 18 18 C 1.50707 * 109.47316 * 185.00393 * 15 2 1 19 19 C 1.38245 * 119.97435 * 84.72034 * 18 15 2 20 20 C 1.38196 * 120.02027 * 179.77090 * 19 18 15 21 21 C 1.38461 * 119.97678 * 0.50700 * 20 19 18 22 22 F 1.35101 * 120.02816 * 179.77154 * 21 20 19 23 23 C 1.38456 * 119.94456 * 359.74744 * 21 20 19 24 24 C 1.38191 * 119.97928 * 359.97438 * 23 21 20 25 25 H 1.08997 * 109.46934 * 299.99794 * 1 2 3 26 26 H 1.09003 * 109.46921 * 59.99672 * 1 2 3 27 27 H 1.09003 * 109.47365 * 179.97438 * 1 2 3 28 28 H 0.97000 * 120.00590 * 94.99321 * 4 2 1 29 29 H 0.97009 * 119.99939 * 179.97438 * 10 9 7 30 30 H 0.96700 * 114.00311 * 300.00378 * 17 15 2 31 31 H 1.08001 * 119.98803 * 0.02600 * 19 18 15 32 32 H 1.08001 * 120.01308 * 180.26000 * 20 19 18 33 33 H 1.08009 * 120.00937 * 179.97438 * 23 21 20 34 34 H 1.08004 * 119.99096 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1471 -0.0184 2.3571 6 8 1.8581 1.1624 2.4117 7 6 2.6345 -0.7086 3.5524 8 1 2.8914 -1.7565 3.5038 9 6 2.7688 -0.0099 4.7586 10 7 2.4584 1.2581 4.8172 11 14 3.3915 -0.8906 6.2838 12 1 4.7526 -1.4253 6.0256 13 1 3.4427 0.0638 7.4203 14 1 2.4749 -2.0102 6.6178 15 6 2.0400 -0.7212 -1.2493 16 1 1.7516 -0.1582 -2.1370 17 8 1.4702 -2.0303 -1.3095 18 6 3.5419 -0.8295 -1.1890 19 6 4.1321 -1.8729 -0.5004 20 6 5.5092 -1.9758 -0.4485 21 6 6.2980 -1.0274 -1.0774 22 9 7.6445 -1.1244 -1.0234 23 6 5.7058 0.0201 -1.7623 24 6 4.3284 0.1177 -1.8178 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 2.2490 -1.6319 1.1525 29 1 2.5511 1.7420 5.6529 30 1 1.6858 -2.5885 -0.5499 31 1 3.5166 -2.6102 -0.0065 32 1 5.9701 -2.7933 0.0859 33 1 6.3201 0.7606 -2.2529 34 1 3.8662 0.9345 -2.3522 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274205699.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:28:04 Heat of formation + Delta-G solvation = -139.591993 kcal Electronic energy + Delta-G solvation = -20403.922696 eV Core-core repulsion = 17021.872454 eV Total energy + Delta-G solvation = -3382.050242 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.90736 -41.02604 -39.25931 -37.87864 -35.14246 -34.37397 -32.41126 -31.84208 -31.23685 -28.15902 -26.89934 -24.08564 -23.41099 -22.35042 -21.04164 -19.56812 -18.82588 -17.87838 -17.62960 -17.38270 -16.89008 -16.59358 -16.24064 -15.52555 -15.29767 -14.93690 -14.92290 -14.51322 -14.26093 -13.99214 -13.85188 -13.70230 -13.29956 -13.03749 -12.87035 -12.69664 -12.58489 -12.47453 -12.07960 -11.99292 -11.83737 -11.09912 -10.90512 -10.05938 -9.81448 -9.54883 -9.40850 -8.26623 -6.81764 0.12597 0.29263 1.39699 1.42504 1.53431 2.24124 2.51309 2.56013 3.04652 3.28225 3.47394 3.58873 3.68989 3.74392 3.92365 3.99570 4.28512 4.33791 4.45191 4.56497 4.69349 4.86985 4.95117 4.98735 5.11486 5.15127 5.24234 5.33762 5.38864 5.49576 5.90326 5.91489 6.25078 6.30217 6.63680 6.90148 7.57307 8.53790 8.71609 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.015231 B = 0.007011 C = 0.005437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1837.892390 B = 3992.583656 C = 5149.051892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.123 3.877 3 H 0.054 0.946 4 N -0.743 5.743 5 C 0.546 3.454 6 O -0.629 6.629 7 C -0.572 4.572 8 H 0.087 0.913 9 C 0.030 3.970 10 N -0.822 5.822 11 Si 0.990 3.010 12 H -0.256 1.256 13 H -0.278 1.278 14 H -0.253 1.253 15 C 0.160 3.840 16 H 0.138 0.862 17 O -0.551 6.551 18 C -0.126 4.126 19 C -0.081 4.081 20 C -0.156 4.156 21 C 0.072 3.928 22 F -0.149 7.149 23 C -0.157 4.157 24 C -0.089 4.089 25 H 0.021 0.979 26 H 0.078 0.922 27 H 0.068 0.932 28 H 0.388 0.612 29 H 0.272 0.728 30 H 0.381 0.619 31 H 0.145 0.855 32 H 0.149 0.851 33 H 0.152 0.848 34 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.491 -7.670 -12.114 14.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.017 3.983 3 H 0.073 0.927 4 N -0.398 5.398 5 C 0.350 3.650 6 O -0.516 6.516 7 C -0.609 4.609 8 H 0.105 0.895 9 C -0.185 4.185 10 N -0.452 5.452 11 Si 0.810 3.190 12 H -0.180 1.180 13 H -0.203 1.203 14 H -0.177 1.177 15 C 0.100 3.900 16 H 0.155 0.845 17 O -0.358 6.358 18 C -0.126 4.126 19 C -0.099 4.099 20 C -0.175 4.175 21 C 0.053 3.947 22 F -0.128 7.128 23 C -0.176 4.176 24 C -0.107 4.107 25 H 0.040 0.960 26 H 0.097 0.903 27 H 0.087 0.913 28 H 0.223 0.777 29 H 0.082 0.918 30 H 0.230 0.770 31 H 0.162 0.838 32 H 0.166 0.834 33 H 0.170 0.830 34 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 3.073 -6.437 -12.564 14.447 hybrid contribution 0.911 -0.483 1.479 1.802 sum 3.984 -6.920 -11.085 13.661 Atomic orbital electron populations 1.21976 0.95205 1.02313 1.00883 1.21307 0.94392 0.96846 0.85754 0.92736 1.45759 1.72126 1.12908 1.09044 1.18436 0.77313 0.85936 0.83311 1.90561 1.56813 1.18616 1.85609 1.21384 1.47215 0.98181 0.94115 0.89519 1.26883 0.92901 0.95086 1.03607 1.70180 1.36893 1.10453 1.27635 0.85186 0.79707 0.78481 0.75661 1.18048 1.20264 1.17725 1.21066 0.86610 0.84628 0.97710 0.84499 1.86576 1.75811 1.24417 1.48947 1.20719 0.97150 0.96254 0.98515 1.20924 0.93992 0.98218 0.96809 1.21310 0.94367 1.00283 1.01525 1.17992 0.76759 0.98199 1.01709 1.91459 1.30097 1.96174 1.95097 1.21340 0.96175 0.98478 1.01614 1.21122 0.92532 0.98569 0.98430 0.95981 0.90312 0.91293 0.77713 0.91802 0.76983 0.83784 0.83359 0.83011 0.82714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.81 9.29 71.98 0.67 -4.14 16 2 C 0.12 4.26 2.47 44.99 0.11 4.37 16 3 H 0.05 2.25 7.58 -2.39 -0.02 2.23 16 4 N -0.74 -30.04 4.26 -446.83 -1.90 -31.94 16 5 C 0.55 30.14 7.71 86.36 0.67 30.80 16 6 O -0.63 -40.84 14.68 -4.31 -0.06 -40.91 16 7 C -0.57 -31.33 9.54 24.83 0.24 -31.09 16 8 H 0.09 4.20 7.85 -2.91 -0.02 4.17 16 9 C 0.03 1.67 5.50 85.30 0.47 2.13 16 10 N -0.82 -49.99 11.83 21.83 0.26 -49.73 16 11 Si 0.99 40.57 29.56 68.60 2.03 42.60 16 12 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 13 H -0.28 -11.13 7.11 99.48 0.71 -10.42 16 14 H -0.25 -9.71 7.11 99.48 0.71 -9.00 16 15 C 0.16 4.02 3.12 29.85 0.09 4.11 16 16 H 0.14 2.84 8.05 -2.39 -0.02 2.82 16 17 O -0.55 -12.88 12.26 -148.98 -1.83 -14.71 16 18 C -0.13 -3.30 4.78 -19.86 -0.09 -3.40 16 19 C -0.08 -2.10 8.16 22.26 0.18 -1.92 16 20 C -0.16 -4.14 10.03 22.31 0.22 -3.92 16 21 C 0.07 2.02 7.30 22.38 0.16 2.19 16 22 F -0.15 -4.29 17.27 44.97 0.78 -3.52 16 23 C -0.16 -3.98 10.03 22.31 0.22 -3.75 16 24 C -0.09 -2.19 9.68 22.26 0.22 -1.97 16 25 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 27 H 0.07 2.07 7.56 -2.39 -0.02 2.06 16 28 H 0.39 13.08 5.59 -92.71 -0.52 12.56 16 29 H 0.27 15.14 8.29 -92.70 -0.77 14.37 16 30 H 0.38 7.47 6.25 -74.06 -0.46 7.00 16 31 H 0.14 3.06 5.62 -2.91 -0.02 3.05 16 32 H 0.15 3.37 8.06 -2.91 -0.02 3.34 16 33 H 0.15 3.11 8.06 -2.91 -0.02 3.09 16 34 H 0.16 2.97 8.06 -2.91 -0.02 2.95 16 Total: -1.00 -75.43 296.02 2.59 -72.84 By element: Atomic # 1 Polarization: 31.78 SS G_CDS: 0.17 Total: 31.94 kcal Atomic # 6 Polarization: -9.74 SS G_CDS: 3.16 Total: -6.58 kcal Atomic # 7 Polarization: -80.02 SS G_CDS: -1.64 Total: -81.67 kcal Atomic # 8 Polarization: -53.73 SS G_CDS: -1.89 Total: -55.61 kcal Atomic # 9 Polarization: -4.29 SS G_CDS: 0.78 Total: -3.52 kcal Atomic # 14 Polarization: 40.57 SS G_CDS: 2.03 Total: 42.60 kcal Total: -75.43 2.59 -72.84 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274205699.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.756 kcal (2) G-P(sol) polarization free energy of solvation -75.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds