Wall clock time and date at job start Mon Mar 30 2020 00:28:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09000 * 109.47258 * 2 1 4 4 N 1.46505 * 109.46924 * 119.99380 * 2 1 3 5 5 C 1.34779 * 120.00098 * 275.00020 * 4 2 1 6 6 O 1.21690 * 119.99959 * 0.02562 * 5 4 2 7 7 C 1.46371 * 120.00003 * 179.97438 * 5 4 2 8 8 H 1.08003 * 120.00181 * 0.02562 * 7 5 4 9 9 C 1.40045 * 120.00069 * 180.02562 * 7 5 4 10 10 N 1.30675 * 119.99862 * 359.97438 * 9 7 5 11 11 Si 1.86808 * 120.00256 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47004 * 89.99864 * 11 9 7 13 13 H 1.48498 * 109.47020 * 209.99929 * 11 9 7 14 14 H 1.48504 * 109.46856 * 329.99660 * 11 9 7 15 15 C 1.52997 * 109.47505 * 239.99490 * 2 1 3 16 16 H 1.09001 * 109.46922 * 185.00308 * 15 2 1 17 17 O 1.42905 * 109.46921 * 305.00039 * 15 2 1 18 18 C 1.50698 * 109.47342 * 65.00295 * 15 2 1 19 19 C 1.38247 * 119.97227 * 279.73040 * 18 15 2 20 20 C 1.38201 * 120.02599 * 179.72275 * 19 18 15 21 21 C 1.38457 * 119.96897 * 0.52667 * 20 19 18 22 22 F 1.35100 * 120.02123 * 179.72789 * 21 20 19 23 23 C 1.38456 * 119.95099 * 359.74210 * 21 20 19 24 24 C 1.38193 * 119.97505 * 0.02562 * 23 21 20 25 25 H 1.09001 * 109.46841 * 60.00541 * 1 2 3 26 26 H 1.09000 * 109.47258 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47470 * 300.00855 * 1 2 3 28 28 H 0.97001 * 120.00308 * 95.00352 * 4 2 1 29 29 H 0.97004 * 119.99740 * 180.02562 * 10 9 7 30 30 H 0.96696 * 114.00036 * 60.00010 * 17 15 2 31 31 H 1.08008 * 119.98815 * 359.97274 * 19 18 15 32 32 H 1.07999 * 120.01219 * 180.29149 * 20 19 18 33 33 H 1.08007 * 120.00901 * 179.97438 * 23 21 20 34 34 H 1.08004 * 119.98774 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0182 -0.6905 1.1963 5 6 2.1469 -0.0180 2.3572 6 8 1.8571 1.1626 2.4119 7 6 2.6342 -0.7081 3.5526 8 1 2.8911 -1.7560 3.5042 9 6 2.7675 -0.0095 4.7590 10 7 2.4572 1.2586 4.8174 11 14 3.3901 -0.8899 6.2844 12 1 4.8700 -0.7846 6.3473 13 1 2.7975 -0.2641 7.4936 14 1 2.9976 -2.3209 6.2248 15 6 2.0400 -0.7213 -1.2491 16 1 3.1263 -0.7995 -1.2053 17 8 1.4702 -2.0305 -1.3092 18 6 1.6415 0.0568 -2.4766 19 6 0.3597 -0.0587 -2.9816 20 6 -0.0087 0.6589 -4.1038 21 6 0.9098 1.4852 -4.7287 22 9 0.5524 2.1829 -5.8290 23 6 2.1949 1.5958 -4.2253 24 6 2.5595 0.8810 -3.1002 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 2.2490 -1.6317 1.1529 29 1 2.5498 1.7425 5.6530 30 1 0.5041 -2.0375 -1.3502 31 1 -0.3553 -0.7068 -2.4965 32 1 -1.0114 0.5721 -4.4953 33 1 2.9122 2.2398 -4.7123 34 1 3.5617 0.9674 -2.7070 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274205701.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:28:08 Heat of formation + Delta-G solvation = -115.098934 kcal Electronic energy + Delta-G solvation = -19852.855215 eV Core-core repulsion = 16471.867071 eV Total energy + Delta-G solvation = -3380.988144 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.01544 -39.97592 -37.79046 -36.46120 -33.47776 -32.33655 -31.39579 -31.17873 -29.18010 -26.44427 -25.87256 -23.14421 -22.30428 -20.69670 -19.39029 -18.03283 -17.47624 -16.94504 -16.56461 -15.72110 -15.55642 -15.17207 -14.78971 -14.58218 -14.27112 -13.76611 -13.65949 -13.23486 -13.08718 -12.62286 -12.45530 -12.26979 -11.90674 -11.61540 -11.23089 -11.18565 -11.02492 -10.82992 -10.77813 -10.47450 -10.24093 -9.89786 -9.22811 -8.86661 -8.68459 -7.63615 -7.52763 -6.19425 -4.64769 0.97322 1.08517 3.13862 3.20864 3.24293 3.40307 4.08296 4.11689 4.43509 4.49130 4.55710 4.58867 4.72393 5.06390 5.07391 5.13534 5.25375 5.40588 5.69430 5.77225 5.81087 5.82413 5.95818 6.05738 6.08144 6.10805 6.39147 6.50586 6.72152 6.77321 7.43105 7.62086 7.94334 8.09482 8.33062 9.02146 9.53796 10.59116 10.77670 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.041537 B = 0.003904 C = 0.003799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.935768 B = 7169.597697 C = 7367.671635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.129 3.871 3 H 0.084 0.916 4 N -0.758 5.758 5 C 0.555 3.445 6 O -0.581 6.581 7 C -0.545 4.545 8 H 0.068 0.932 9 C 0.088 3.912 10 N -0.768 5.768 11 Si 0.907 3.093 12 H -0.272 1.272 13 H -0.280 1.280 14 H -0.265 1.265 15 C 0.140 3.860 16 H 0.113 0.887 17 O -0.551 6.551 18 C -0.113 4.113 19 C -0.081 4.081 20 C -0.152 4.152 21 C 0.092 3.908 22 F -0.143 7.143 23 C -0.151 4.151 24 C -0.078 4.078 25 H 0.055 0.945 26 H 0.050 0.950 27 H 0.069 0.931 28 H 0.385 0.615 29 H 0.268 0.732 30 H 0.371 0.629 31 H 0.133 0.867 32 H 0.135 0.865 33 H 0.135 0.865 34 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.605 -3.177 -15.657 16.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.022 3.978 3 H 0.102 0.898 4 N -0.413 5.413 5 C 0.359 3.641 6 O -0.464 6.464 7 C -0.582 4.582 8 H 0.086 0.914 9 C -0.132 4.132 10 N -0.397 5.397 11 Si 0.732 3.268 12 H -0.198 1.198 13 H -0.205 1.205 14 H -0.189 1.189 15 C 0.080 3.920 16 H 0.131 0.869 17 O -0.358 6.358 18 C -0.114 4.114 19 C -0.099 4.099 20 C -0.171 4.171 21 C 0.073 3.927 22 F -0.122 7.122 23 C -0.170 4.170 24 C -0.096 4.096 25 H 0.073 0.927 26 H 0.069 0.931 27 H 0.088 0.912 28 H 0.217 0.783 29 H 0.079 0.921 30 H 0.220 0.780 31 H 0.151 0.849 32 H 0.153 0.847 33 H 0.153 0.847 34 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -2.224 -2.269 -15.508 15.830 hybrid contribution -0.278 -0.437 0.480 0.707 sum -2.503 -2.707 -15.028 15.473 Atomic orbital electron populations 1.22342 0.97086 1.01026 1.02488 1.21013 0.93540 0.97880 0.85410 0.89822 1.46137 1.73041 1.13127 1.08999 1.18234 0.77825 0.86373 0.81654 1.90597 1.54889 1.16457 1.84453 1.20893 1.46818 0.97188 0.93293 0.91413 1.25703 0.93312 0.94464 0.99706 1.70024 1.35203 1.08201 1.26293 0.86383 0.79339 0.80262 0.80828 1.19751 1.20496 1.18899 1.21227 0.98934 0.81782 0.90052 0.86944 1.86604 1.25366 1.27156 1.96637 1.20639 0.94267 0.98679 0.97816 1.20821 0.95753 0.98446 0.94883 1.21085 0.99907 0.98604 0.97530 1.17726 0.94259 0.94992 0.85745 1.91488 1.92391 1.77284 1.51012 1.21128 0.95191 1.02324 0.98379 1.20921 0.99942 0.94832 0.93953 0.92657 0.93134 0.91206 0.78310 0.92147 0.78026 0.84940 0.84731 0.84675 0.84609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.76 8.23 37.15 0.31 -2.45 16 2 C 0.13 2.30 2.44 -67.93 -0.17 2.13 16 3 H 0.08 1.73 7.58 -51.93 -0.39 1.34 16 4 N -0.76 -16.36 5.06 -55.22 -0.28 -16.64 16 5 C 0.55 15.43 7.71 -12.99 -0.10 15.33 16 6 O -0.58 -18.36 14.68 5.20 0.08 -18.29 16 7 C -0.54 -15.25 9.54 -35.63 -0.34 -15.59 16 8 H 0.07 1.75 7.85 -52.48 -0.41 1.34 16 9 C 0.09 2.43 5.50 -17.37 -0.10 2.34 16 10 N -0.77 -22.88 11.83 55.55 0.66 -22.22 16 11 Si 0.91 20.03 29.56 -169.99 -5.02 15.01 16 12 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 13 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 14 H -0.26 -5.67 7.11 56.52 0.40 -5.27 16 15 C 0.14 1.94 3.18 -27.89 -0.09 1.85 16 16 H 0.11 1.58 8.00 -51.93 -0.42 1.16 16 17 O -0.55 -7.32 12.82 -35.23 -0.45 -7.77 16 18 C -0.11 -1.39 4.81 -104.62 -0.50 -1.89 16 19 C -0.08 -0.88 7.30 -39.59 -0.29 -1.17 16 20 C -0.15 -1.62 10.03 -39.51 -0.40 -2.02 16 21 C 0.09 1.06 7.30 -39.42 -0.29 0.78 16 22 F -0.14 -1.72 17.27 2.25 0.04 -1.68 16 23 C -0.15 -1.66 10.03 -39.52 -0.40 -2.06 16 24 C -0.08 -0.90 9.67 -39.60 -0.38 -1.29 16 25 H 0.05 0.75 5.59 -51.93 -0.29 0.46 16 26 H 0.05 0.70 6.72 -51.93 -0.35 0.35 16 27 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 28 H 0.38 7.62 8.36 -40.82 -0.34 7.27 16 29 H 0.27 7.24 8.29 -40.82 -0.34 6.91 16 30 H 0.37 3.91 5.65 45.56 0.26 4.16 16 31 H 0.13 1.18 5.89 -52.48 -0.31 0.87 16 32 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 33 H 0.14 1.22 8.06 -52.48 -0.42 0.79 16 34 H 0.14 1.37 8.04 -52.48 -0.42 0.95 16 LS Contribution 294.48 15.07 4.44 4.44 Total: -1.00 -33.92 294.48 -6.36 -40.28 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: -3.08 Total: 10.90 kcal Atomic # 6 Polarization: -1.29 SS G_CDS: -2.74 Total: -4.03 kcal Atomic # 7 Polarization: -39.24 SS G_CDS: 0.38 Total: -38.86 kcal Atomic # 8 Polarization: -25.68 SS G_CDS: -0.38 Total: -26.06 kcal Atomic # 9 Polarization: -1.72 SS G_CDS: 0.04 Total: -1.68 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.01 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -33.92 -6.36 -40.28 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274205701.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.816 kcal (2) G-P(sol) polarization free energy of solvation -33.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds