Wall clock time and date at job start Mon Mar 30 2020 00:28:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09000 * 109.47258 * 2 1 4 4 N 1.46505 * 109.46924 * 119.99380 * 2 1 3 5 5 C 1.34779 * 120.00098 * 275.00020 * 4 2 1 6 6 O 1.21690 * 119.99959 * 0.02562 * 5 4 2 7 7 C 1.46371 * 120.00003 * 179.97438 * 5 4 2 8 8 H 1.08003 * 120.00181 * 0.02562 * 7 5 4 9 9 C 1.40045 * 120.00069 * 180.02562 * 7 5 4 10 10 N 1.30675 * 119.99862 * 359.97438 * 9 7 5 11 11 Si 1.86808 * 120.00256 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47004 * 89.99864 * 11 9 7 13 13 H 1.48498 * 109.47020 * 209.99929 * 11 9 7 14 14 H 1.48504 * 109.46856 * 329.99660 * 11 9 7 15 15 C 1.52997 * 109.47505 * 239.99490 * 2 1 3 16 16 H 1.09001 * 109.46922 * 185.00308 * 15 2 1 17 17 O 1.42905 * 109.46921 * 305.00039 * 15 2 1 18 18 C 1.50698 * 109.47342 * 65.00295 * 15 2 1 19 19 C 1.38247 * 119.97227 * 279.73040 * 18 15 2 20 20 C 1.38201 * 120.02599 * 179.72275 * 19 18 15 21 21 C 1.38457 * 119.96897 * 0.52667 * 20 19 18 22 22 F 1.35100 * 120.02123 * 179.72789 * 21 20 19 23 23 C 1.38456 * 119.95099 * 359.74210 * 21 20 19 24 24 C 1.38193 * 119.97505 * 0.02562 * 23 21 20 25 25 H 1.09001 * 109.46841 * 60.00541 * 1 2 3 26 26 H 1.09000 * 109.47258 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47470 * 300.00855 * 1 2 3 28 28 H 0.97001 * 120.00308 * 95.00352 * 4 2 1 29 29 H 0.97004 * 119.99740 * 180.02562 * 10 9 7 30 30 H 0.96696 * 114.00036 * 60.00010 * 17 15 2 31 31 H 1.08008 * 119.98815 * 359.97274 * 19 18 15 32 32 H 1.07999 * 120.01219 * 180.29149 * 20 19 18 33 33 H 1.08007 * 120.00901 * 179.97438 * 23 21 20 34 34 H 1.08004 * 119.98774 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0182 -0.6905 1.1963 5 6 2.1469 -0.0180 2.3572 6 8 1.8571 1.1626 2.4119 7 6 2.6342 -0.7081 3.5526 8 1 2.8911 -1.7560 3.5042 9 6 2.7675 -0.0095 4.7590 10 7 2.4572 1.2586 4.8174 11 14 3.3901 -0.8899 6.2844 12 1 4.8700 -0.7846 6.3473 13 1 2.7975 -0.2641 7.4936 14 1 2.9976 -2.3209 6.2248 15 6 2.0400 -0.7213 -1.2491 16 1 3.1263 -0.7995 -1.2053 17 8 1.4702 -2.0305 -1.3092 18 6 1.6415 0.0568 -2.4766 19 6 0.3597 -0.0587 -2.9816 20 6 -0.0087 0.6589 -4.1038 21 6 0.9098 1.4852 -4.7287 22 9 0.5524 2.1829 -5.8290 23 6 2.1949 1.5958 -4.2253 24 6 2.5595 0.8810 -3.1002 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 2.2490 -1.6317 1.1529 29 1 2.5498 1.7425 5.6530 30 1 0.5041 -2.0375 -1.3502 31 1 -0.3553 -0.7068 -2.4965 32 1 -1.0114 0.5721 -4.4953 33 1 2.9122 2.2398 -4.7123 34 1 3.5617 0.9674 -2.7070 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274205701.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:28:07 Heat of formation + Delta-G solvation = -140.391039 kcal Electronic energy + Delta-G solvation = -19853.951963 eV Core-core repulsion = 16471.867071 eV Total energy + Delta-G solvation = -3382.084892 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.91844 -41.05092 -39.37945 -37.92259 -35.17164 -34.38944 -32.46235 -32.20915 -30.64448 -28.21149 -27.29148 -24.02442 -23.56382 -22.05173 -21.14888 -19.34412 -18.95038 -18.05516 -17.59107 -17.44308 -16.64353 -16.45200 -16.25050 -15.89428 -15.64610 -15.07649 -14.73158 -14.48897 -14.42661 -14.06550 -13.92982 -13.48377 -13.22663 -13.09904 -12.91235 -12.70924 -12.59177 -12.35384 -12.10009 -12.01159 -11.89731 -11.12939 -10.92054 -10.07832 -9.83597 -9.68347 -9.36966 -8.27385 -6.83524 0.06095 0.24344 1.41170 1.42321 1.57544 2.25295 2.48766 2.50458 3.04925 3.26096 3.44663 3.64095 3.72036 3.75810 3.85527 3.98858 4.11454 4.28447 4.37287 4.40546 4.70897 4.81866 4.93067 4.93818 5.01823 5.11810 5.20635 5.32392 5.34187 5.50696 5.86760 5.91229 6.26744 6.31818 6.69493 6.89046 7.59029 8.52278 8.69854 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.041537 B = 0.003904 C = 0.003799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.935768 B = 7169.597697 C = 7367.671635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.125 3.875 3 H 0.049 0.951 4 N -0.746 5.746 5 C 0.541 3.459 6 O -0.630 6.630 7 C -0.575 4.575 8 H 0.085 0.915 9 C 0.030 3.970 10 N -0.822 5.822 11 Si 0.996 3.004 12 H -0.262 1.262 13 H -0.274 1.274 14 H -0.250 1.250 15 C 0.160 3.840 16 H 0.109 0.891 17 O -0.554 6.554 18 C -0.127 4.127 19 C -0.082 4.082 20 C -0.151 4.151 21 C 0.080 3.920 22 F -0.147 7.147 23 C -0.155 4.155 24 C -0.087 4.087 25 H 0.084 0.916 26 H 0.077 0.923 27 H 0.024 0.976 28 H 0.396 0.604 29 H 0.273 0.727 30 H 0.385 0.615 31 H 0.155 0.845 32 H 0.158 0.842 33 H 0.152 0.848 34 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.753 -5.000 -16.223 17.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.019 3.981 3 H 0.067 0.933 4 N -0.400 5.400 5 C 0.345 3.655 6 O -0.517 6.517 7 C -0.612 4.612 8 H 0.103 0.897 9 C -0.185 4.185 10 N -0.452 5.452 11 Si 0.815 3.185 12 H -0.187 1.187 13 H -0.199 1.199 14 H -0.173 1.173 15 C 0.100 3.900 16 H 0.127 0.873 17 O -0.362 6.362 18 C -0.128 4.128 19 C -0.100 4.100 20 C -0.170 4.170 21 C 0.061 3.939 22 F -0.126 7.126 23 C -0.173 4.173 24 C -0.106 4.106 25 H 0.103 0.897 26 H 0.096 0.904 27 H 0.044 0.956 28 H 0.230 0.770 29 H 0.083 0.917 30 H 0.236 0.764 31 H 0.173 0.827 32 H 0.175 0.825 33 H 0.169 0.831 34 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -2.386 -4.138 -16.132 16.824 hybrid contribution -0.264 0.143 0.532 0.611 sum -2.649 -3.995 -15.600 16.320 Atomic orbital electron populations 1.22241 0.95519 1.02545 1.01699 1.21193 0.94785 0.96343 0.85771 0.93271 1.45789 1.71974 1.13409 1.08799 1.18545 0.77546 0.85998 0.83456 1.90553 1.56957 1.18529 1.85697 1.21446 1.47303 0.98226 0.94182 0.89663 1.26935 0.92791 0.95121 1.03657 1.70190 1.36713 1.10512 1.27754 0.85048 0.78858 0.79211 0.75353 1.18668 1.19881 1.17288 1.20834 0.98655 0.81809 0.88663 0.87279 1.86595 1.26721 1.26373 1.96486 1.20539 0.95359 0.99348 0.97543 1.21065 0.95474 0.98517 0.94923 1.21351 1.00780 0.97733 0.97102 1.17980 0.94790 0.95324 0.85843 1.91479 1.92434 1.77438 1.51237 1.21321 0.95559 1.02298 0.98156 1.21096 1.00466 0.94774 0.94214 0.89734 0.90409 0.95644 0.77044 0.91670 0.76443 0.82709 0.82469 0.83073 0.83827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.12 8.23 71.98 0.59 -4.53 16 2 C 0.13 4.50 2.44 44.99 0.11 4.61 16 3 H 0.05 2.12 7.58 -2.39 -0.02 2.10 16 4 N -0.75 -32.55 5.06 -446.83 -2.26 -34.81 16 5 C 0.54 30.96 7.71 86.36 0.67 31.63 16 6 O -0.63 -41.72 14.68 -4.32 -0.06 -41.78 16 7 C -0.57 -32.51 9.54 24.83 0.24 -32.28 16 8 H 0.09 4.35 7.85 -2.91 -0.02 4.32 16 9 C 0.03 1.67 5.50 85.30 0.47 2.14 16 10 N -0.82 -50.32 11.83 21.84 0.26 -50.06 16 11 Si 1.00 40.92 29.56 68.60 2.03 42.95 16 12 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 13 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 14 H -0.25 -9.55 7.11 99.48 0.71 -8.84 16 15 C 0.16 4.26 3.18 29.85 0.09 4.36 16 16 H 0.11 2.98 8.00 -2.39 -0.02 2.96 16 17 O -0.55 -13.32 12.82 -148.98 -1.91 -15.23 16 18 C -0.13 -2.91 4.81 -19.86 -0.10 -3.01 16 19 C -0.08 -1.57 7.30 22.26 0.16 -1.40 16 20 C -0.15 -2.82 10.03 22.31 0.22 -2.60 16 21 C 0.08 1.70 7.30 22.37 0.16 1.87 16 22 F -0.15 -3.30 17.27 44.97 0.78 -2.52 16 23 C -0.15 -3.19 10.03 22.31 0.22 -2.96 16 24 C -0.09 -1.92 9.67 22.26 0.22 -1.71 16 25 H 0.08 2.15 5.59 -2.39 -0.01 2.14 16 26 H 0.08 2.00 6.72 -2.39 -0.02 1.98 16 27 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.40 15.44 8.36 -92.71 -0.78 14.67 16 29 H 0.27 15.18 8.29 -92.71 -0.77 14.41 16 30 H 0.38 6.81 5.65 -74.06 -0.42 6.39 16 31 H 0.16 2.18 5.89 -2.91 -0.02 2.16 16 32 H 0.16 2.17 8.06 -2.91 -0.02 2.15 16 33 H 0.15 2.51 8.06 -2.91 -0.02 2.49 16 34 H 0.14 2.82 8.04 -2.91 -0.02 2.80 16 Total: -1.00 -76.22 294.48 1.86 -74.37 By element: Atomic # 1 Polarization: 31.01 SS G_CDS: -0.04 Total: 30.97 kcal Atomic # 6 Polarization: -6.95 SS G_CDS: 3.06 Total: -3.89 kcal Atomic # 7 Polarization: -82.87 SS G_CDS: -2.00 Total: -84.87 kcal Atomic # 8 Polarization: -55.04 SS G_CDS: -1.97 Total: -57.01 kcal Atomic # 9 Polarization: -3.30 SS G_CDS: 0.78 Total: -2.52 kcal Atomic # 14 Polarization: 40.92 SS G_CDS: 2.03 Total: 42.95 kcal Total: -76.22 1.86 -74.37 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274205701.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.024 kcal (2) G-P(sol) polarization free energy of solvation -76.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds