Wall clock time and date at job start Mon Mar 30 2020 00:28:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08993 * 109.47205 * 2 1 4 4 N 1.46505 * 109.47110 * 239.99641 * 2 1 3 5 5 C 1.34777 * 119.99583 * 85.00233 * 4 2 1 6 6 O 1.21681 * 120.00283 * 359.97438 * 5 4 2 7 7 C 1.46378 * 119.99625 * 179.97438 * 5 4 2 8 8 H 1.08001 * 119.99989 * 359.97438 * 7 5 4 9 9 C 1.40051 * 119.99571 * 179.97438 * 7 5 4 10 10 N 1.30670 * 120.00125 * 0.02562 * 9 7 5 11 11 Si 1.86799 * 119.99625 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.47190 * 90.00137 * 11 9 7 13 13 H 1.48504 * 109.46959 * 209.99991 * 11 9 7 14 14 H 1.48507 * 109.47365 * 330.00166 * 11 9 7 15 15 C 1.52998 * 109.47246 * 119.99901 * 2 1 3 16 16 H 1.08998 * 109.47209 * 300.00365 * 15 2 1 17 17 O 1.42903 * 109.47279 * 59.99782 * 15 2 1 18 18 C 1.50699 * 109.47475 * 180.02562 * 15 2 1 19 19 C 1.38247 * 119.97465 * 279.72688 * 18 15 2 20 20 C 1.38190 * 120.02973 * 180.27547 * 19 18 15 21 21 C 1.38466 * 119.97055 * 359.97438 * 20 19 18 22 22 F 1.35097 * 120.02197 * 179.97438 * 21 20 19 23 23 C 1.38454 * 119.94878 * 0.02562 * 21 20 19 24 24 C 1.38192 * 119.97677 * 0.02562 * 23 21 20 25 25 H 1.09008 * 109.46715 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47314 * 299.99798 * 1 2 3 27 27 H 1.08997 * 109.47098 * 60.00217 * 1 2 3 28 28 H 0.96997 * 120.00054 * 264.99599 * 4 2 1 29 29 H 0.97004 * 119.99674 * 179.97438 * 10 9 7 30 30 H 0.96707 * 113.99737 * 60.00166 * 17 15 2 31 31 H 1.08003 * 119.98380 * 0.24954 * 19 18 15 32 32 H 1.08005 * 120.01789 * 180.02562 * 20 19 18 33 33 H 1.08001 * 120.01228 * 179.97438 * 23 21 20 34 34 H 1.07998 * 119.99239 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1962 5 6 2.1471 -0.0183 -2.3571 6 8 1.8573 1.1622 -2.4119 7 6 2.6355 -0.7083 -3.5521 8 1 2.8931 -1.7560 -3.5034 9 6 2.7688 -0.0097 -4.7586 10 7 2.4576 1.2580 -4.8174 11 14 3.3914 -0.8904 -6.2838 12 1 2.2415 -1.4624 -7.0293 13 1 4.1138 0.0739 -7.1519 14 1 4.3140 -1.9828 -5.8827 15 6 2.0400 -0.7212 1.2492 16 1 1.6767 -0.2074 2.1392 17 8 1.5637 -2.0685 1.2493 18 6 3.5470 -0.7207 1.2496 19 6 4.2382 -1.6414 0.4843 20 6 5.6201 -1.6456 0.4882 21 6 6.3125 -0.7268 1.2587 22 9 7.6634 -0.7303 1.2637 23 6 5.6192 0.1948 2.0248 24 6 4.2372 0.1964 2.0201 25 1 -0.3633 -1.0278 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 2.2491 -1.6318 -1.1525 29 1 2.5502 1.7419 -5.6530 30 1 1.8490 -2.5866 0.4842 31 1 3.6979 -2.3580 -0.1167 32 1 6.1599 -2.3647 -0.1102 33 1 6.1581 0.9117 2.6265 34 1 3.6962 0.9149 2.6179 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274205703.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:28:11 Heat of formation + Delta-G solvation = -114.671624 kcal Electronic energy + Delta-G solvation = -20376.534336 eV Core-core repulsion = 16995.564722 eV Total energy + Delta-G solvation = -3380.969614 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.80165 -39.82096 -37.70899 -36.39056 -33.48817 -32.35669 -31.26186 -30.73663 -29.70619 -26.14879 -25.67745 -23.02330 -22.01203 -20.98754 -19.36194 -18.05176 -17.48939 -16.72354 -16.37455 -15.60635 -15.48449 -15.41174 -14.64614 -14.36078 -13.72404 -13.65163 -13.45608 -13.24788 -12.86652 -12.79653 -12.42615 -12.25924 -11.63362 -11.62039 -11.48944 -11.05390 -10.99558 -10.93924 -10.54373 -10.49433 -10.24139 -9.86710 -9.02066 -8.89007 -8.45121 -7.67550 -7.59057 -6.22455 -4.68383 1.20531 1.32651 3.11254 3.18465 3.21171 3.62736 4.05980 4.32906 4.46096 4.54863 4.63362 4.74287 4.80379 4.95036 5.19251 5.30575 5.39889 5.67706 5.69670 5.94326 5.96000 5.96624 6.12945 6.18013 6.24441 6.30293 6.51124 6.62112 6.82490 6.95348 7.39040 7.59410 7.82898 8.02159 8.25740 8.98737 9.44287 10.55778 10.74234 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.015621 B = 0.006812 C = 0.005355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.018838 B = 4109.598715 C = 5227.393275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.125 3.875 3 H 0.085 0.915 4 N -0.759 5.759 5 C 0.559 3.441 6 O -0.577 6.577 7 C -0.545 4.545 8 H 0.066 0.934 9 C 0.088 3.912 10 N -0.767 5.767 11 Si 0.906 3.094 12 H -0.272 1.272 13 H -0.279 1.279 14 H -0.265 1.265 15 C 0.141 3.859 16 H 0.112 0.888 17 O -0.552 6.552 18 C -0.113 4.113 19 C -0.066 4.066 20 C -0.147 4.147 21 C 0.092 3.908 22 F -0.144 7.144 23 C -0.154 4.154 24 C -0.083 4.083 25 H 0.055 0.945 26 H 0.048 0.952 27 H 0.063 0.937 28 H 0.371 0.629 29 H 0.268 0.732 30 H 0.372 0.628 31 H 0.129 0.871 32 H 0.135 0.865 33 H 0.133 0.867 34 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.249 -5.640 11.718 13.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.018 3.982 3 H 0.103 0.897 4 N -0.416 5.416 5 C 0.363 3.637 6 O -0.459 6.459 7 C -0.582 4.582 8 H 0.084 0.916 9 C -0.132 4.132 10 N -0.395 5.395 11 Si 0.730 3.270 12 H -0.197 1.197 13 H -0.205 1.205 14 H -0.189 1.189 15 C 0.081 3.919 16 H 0.130 0.870 17 O -0.358 6.358 18 C -0.114 4.114 19 C -0.085 4.085 20 C -0.165 4.165 21 C 0.073 3.927 22 F -0.123 7.123 23 C -0.173 4.173 24 C -0.101 4.101 25 H 0.074 0.926 26 H 0.067 0.933 27 H 0.082 0.918 28 H 0.203 0.797 29 H 0.079 0.921 30 H 0.220 0.780 31 H 0.146 0.854 32 H 0.153 0.847 33 H 0.151 0.849 34 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 2.798 -4.382 12.120 13.188 hybrid contribution 1.031 -0.942 -1.387 1.969 sum 3.829 -5.324 10.733 12.577 Atomic orbital electron populations 1.22077 0.95923 1.01692 1.01488 1.21155 0.93867 0.97983 0.85168 0.89748 1.46218 1.73439 1.12262 1.09719 1.18165 0.77719 0.86372 0.81469 1.90602 1.54669 1.16399 1.84263 1.20850 1.46967 0.97065 0.93355 0.91582 1.25685 0.93330 0.94449 0.99689 1.70012 1.35130 1.08158 1.26229 0.86409 0.79355 0.79811 0.81402 1.19734 1.20472 1.18932 1.21238 0.87652 0.83650 0.99313 0.87004 1.86575 1.76690 1.23153 1.49385 1.20568 0.97028 0.96535 0.97275 1.20697 0.93074 0.98119 0.96569 1.21089 0.94952 1.00013 1.00489 1.17706 0.76668 0.98389 0.99956 1.91476 1.29286 1.96063 1.95457 1.21043 0.94926 0.99816 1.01498 1.20790 0.93080 0.97953 0.98299 0.92617 0.93290 0.91822 0.79653 0.92105 0.77969 0.85364 0.84700 0.84949 0.85042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.60 9.34 37.16 0.35 -2.25 16 2 C 0.13 2.21 2.40 -67.93 -0.16 2.05 16 3 H 0.08 1.72 7.58 -51.93 -0.39 1.33 16 4 N -0.76 -15.43 4.18 -55.21 -0.23 -15.67 16 5 C 0.56 15.08 7.71 -12.99 -0.10 14.98 16 6 O -0.58 -18.00 14.68 5.21 0.08 -17.93 16 7 C -0.55 -14.85 9.54 -35.63 -0.34 -15.19 16 8 H 0.07 1.63 7.85 -52.49 -0.41 1.22 16 9 C 0.09 2.42 5.50 -17.37 -0.10 2.32 16 10 N -0.77 -22.66 11.83 55.55 0.66 -22.00 16 11 Si 0.91 19.85 29.56 -169.99 -5.02 14.83 16 12 H -0.27 -5.84 7.11 56.52 0.40 -5.43 16 13 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 14 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 15 C 0.14 1.95 3.08 -27.88 -0.09 1.87 16 16 H 0.11 1.35 8.00 -51.93 -0.42 0.94 16 17 O -0.55 -7.39 12.51 -35.23 -0.44 -7.83 16 18 C -0.11 -1.60 4.88 -104.62 -0.51 -2.11 16 19 C -0.07 -0.93 8.32 -39.60 -0.33 -1.26 16 20 C -0.15 -2.06 10.03 -39.52 -0.40 -2.46 16 21 C 0.09 1.32 7.30 -39.42 -0.29 1.04 16 22 F -0.14 -2.11 17.27 2.25 0.04 -2.07 16 23 C -0.15 -2.02 10.03 -39.52 -0.40 -2.42 16 24 C -0.08 -1.08 9.67 -39.60 -0.38 -1.46 16 25 H 0.05 0.89 7.68 -51.92 -0.40 0.49 16 26 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 28 H 0.37 6.45 5.44 -40.82 -0.22 6.23 16 29 H 0.27 7.22 8.29 -40.82 -0.34 6.89 16 30 H 0.37 4.28 6.12 45.56 0.28 4.56 16 31 H 0.13 1.60 5.50 -52.48 -0.29 1.31 16 32 H 0.14 1.66 8.06 -52.48 -0.42 1.24 16 33 H 0.13 1.43 8.06 -52.49 -0.42 1.01 16 34 H 0.13 1.37 8.04 -52.49 -0.42 0.95 16 LS Contribution 296.04 15.07 4.46 4.46 Total: -1.00 -33.79 296.04 -6.30 -40.09 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: -3.10 Total: 11.02 kcal Atomic # 6 Polarization: -2.15 SS G_CDS: -2.74 Total: -4.89 kcal Atomic # 7 Polarization: -38.09 SS G_CDS: 0.43 Total: -37.67 kcal Atomic # 8 Polarization: -25.39 SS G_CDS: -0.36 Total: -25.76 kcal Atomic # 9 Polarization: -2.11 SS G_CDS: 0.04 Total: -2.07 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.02 Total: 14.83 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -33.79 -6.30 -40.09 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274205703.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.585 kcal (2) G-P(sol) polarization free energy of solvation -33.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds