Wall clock time and date at job start Mon Mar 30 2020 00:28:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08993 * 109.47205 * 2 1 4 4 N 1.46505 * 109.47110 * 239.99641 * 2 1 3 5 5 C 1.34777 * 119.99583 * 85.00233 * 4 2 1 6 6 O 1.21681 * 120.00283 * 359.97438 * 5 4 2 7 7 C 1.46378 * 119.99625 * 179.97438 * 5 4 2 8 8 H 1.08001 * 119.99989 * 359.97438 * 7 5 4 9 9 C 1.40051 * 119.99571 * 179.97438 * 7 5 4 10 10 N 1.30670 * 120.00125 * 0.02562 * 9 7 5 11 11 Si 1.86799 * 119.99625 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.47190 * 90.00137 * 11 9 7 13 13 H 1.48504 * 109.46959 * 209.99991 * 11 9 7 14 14 H 1.48507 * 109.47365 * 330.00166 * 11 9 7 15 15 C 1.52998 * 109.47246 * 119.99901 * 2 1 3 16 16 H 1.08998 * 109.47209 * 300.00365 * 15 2 1 17 17 O 1.42903 * 109.47279 * 59.99782 * 15 2 1 18 18 C 1.50699 * 109.47475 * 180.02562 * 15 2 1 19 19 C 1.38247 * 119.97465 * 279.72688 * 18 15 2 20 20 C 1.38190 * 120.02973 * 180.27547 * 19 18 15 21 21 C 1.38466 * 119.97055 * 359.97438 * 20 19 18 22 22 F 1.35097 * 120.02197 * 179.97438 * 21 20 19 23 23 C 1.38454 * 119.94878 * 0.02562 * 21 20 19 24 24 C 1.38192 * 119.97677 * 0.02562 * 23 21 20 25 25 H 1.09008 * 109.46715 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47314 * 299.99798 * 1 2 3 27 27 H 1.08997 * 109.47098 * 60.00217 * 1 2 3 28 28 H 0.96997 * 120.00054 * 264.99599 * 4 2 1 29 29 H 0.97004 * 119.99674 * 179.97438 * 10 9 7 30 30 H 0.96707 * 113.99737 * 60.00166 * 17 15 2 31 31 H 1.08003 * 119.98380 * 0.24954 * 19 18 15 32 32 H 1.08005 * 120.01789 * 180.02562 * 20 19 18 33 33 H 1.08001 * 120.01228 * 179.97438 * 23 21 20 34 34 H 1.07998 * 119.99239 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1962 5 6 2.1471 -0.0183 -2.3571 6 8 1.8573 1.1622 -2.4119 7 6 2.6355 -0.7083 -3.5521 8 1 2.8931 -1.7560 -3.5034 9 6 2.7688 -0.0097 -4.7586 10 7 2.4576 1.2580 -4.8174 11 14 3.3914 -0.8904 -6.2838 12 1 2.2415 -1.4624 -7.0293 13 1 4.1138 0.0739 -7.1519 14 1 4.3140 -1.9828 -5.8827 15 6 2.0400 -0.7212 1.2492 16 1 1.6767 -0.2074 2.1392 17 8 1.5637 -2.0685 1.2493 18 6 3.5470 -0.7207 1.2496 19 6 4.2382 -1.6414 0.4843 20 6 5.6201 -1.6456 0.4882 21 6 6.3125 -0.7268 1.2587 22 9 7.6634 -0.7303 1.2637 23 6 5.6192 0.1948 2.0248 24 6 4.2372 0.1964 2.0201 25 1 -0.3633 -1.0278 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 2.2491 -1.6318 -1.1525 29 1 2.5502 1.7419 -5.6530 30 1 1.8490 -2.5866 0.4842 31 1 3.6979 -2.3580 -0.1167 32 1 6.1599 -2.3647 -0.1102 33 1 6.1581 0.9117 2.6265 34 1 3.6962 0.9149 2.6179 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274205703.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:28:10 Heat of formation + Delta-G solvation = -139.004628 kcal Electronic energy + Delta-G solvation = -20377.589494 eV Core-core repulsion = 16995.564722 eV Total energy + Delta-G solvation = -3382.024772 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.91442 -41.02496 -39.27447 -37.87779 -35.13571 -34.37421 -32.43961 -31.86524 -31.23816 -28.16674 -26.87296 -24.10820 -23.40800 -22.34471 -21.06636 -19.59266 -18.81488 -17.90499 -17.63043 -17.39103 -16.89449 -16.59995 -16.22219 -15.50529 -15.26925 -14.95991 -14.91056 -14.51621 -14.25329 -13.99988 -13.88431 -13.70676 -13.29725 -13.04015 -12.89398 -12.73511 -12.58863 -12.49063 -12.06102 -11.98455 -11.81515 -11.09167 -10.91960 -10.06519 -9.81768 -9.57435 -9.40380 -8.26973 -6.82006 0.11591 0.28929 1.39956 1.40847 1.55315 2.23962 2.51108 2.55307 3.02622 3.27679 3.48888 3.57955 3.68710 3.74007 3.92297 3.99004 4.28730 4.33434 4.45548 4.56116 4.69212 4.86081 4.95449 4.98407 5.10785 5.14617 5.24061 5.33911 5.38671 5.49588 5.89997 5.90929 6.23928 6.29272 6.62969 6.90068 7.56479 8.53503 8.71341 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.015621 B = 0.006812 C = 0.005355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.018838 B = 4109.598715 C = 5227.393275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.123 3.877 3 H 0.054 0.946 4 N -0.743 5.743 5 C 0.546 3.454 6 O -0.629 6.629 7 C -0.572 4.572 8 H 0.087 0.913 9 C 0.030 3.970 10 N -0.822 5.822 11 Si 0.990 3.010 12 H -0.262 1.262 13 H -0.277 1.277 14 H -0.248 1.248 15 C 0.160 3.840 16 H 0.139 0.861 17 O -0.551 6.551 18 C -0.129 4.129 19 C -0.080 4.080 20 C -0.159 4.159 21 C 0.074 3.926 22 F -0.149 7.149 23 C -0.157 4.157 24 C -0.086 4.086 25 H 0.067 0.933 26 H 0.079 0.921 27 H 0.021 0.979 28 H 0.388 0.612 29 H 0.272 0.728 30 H 0.380 0.620 31 H 0.140 0.860 32 H 0.146 0.854 33 H 0.155 0.845 34 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.561 -7.237 12.412 14.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.017 3.983 3 H 0.072 0.928 4 N -0.399 5.399 5 C 0.350 3.650 6 O -0.516 6.516 7 C -0.608 4.608 8 H 0.106 0.894 9 C -0.185 4.185 10 N -0.452 5.452 11 Si 0.810 3.190 12 H -0.187 1.187 13 H -0.202 1.202 14 H -0.171 1.171 15 C 0.100 3.900 16 H 0.156 0.844 17 O -0.358 6.358 18 C -0.129 4.129 19 C -0.098 4.098 20 C -0.178 4.178 21 C 0.055 3.945 22 F -0.128 7.128 23 C -0.175 4.175 24 C -0.104 4.104 25 H 0.086 0.914 26 H 0.098 0.902 27 H 0.040 0.960 28 H 0.223 0.777 29 H 0.082 0.918 30 H 0.229 0.771 31 H 0.157 0.843 32 H 0.164 0.836 33 H 0.172 0.828 34 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 3.109 -6.040 12.863 14.547 hybrid contribution 0.922 -0.448 -1.510 1.825 sum 4.031 -6.488 11.353 13.684 Atomic orbital electron populations 1.21993 0.95234 1.02256 1.00971 1.21301 0.94380 0.96832 0.85780 0.92761 1.45767 1.72167 1.12856 1.09082 1.18448 0.77318 0.85936 0.83297 1.90561 1.56772 1.18650 1.85577 1.21417 1.47127 0.98224 0.94065 0.89443 1.26888 0.92906 0.95072 1.03619 1.70187 1.36963 1.10476 1.27549 0.85127 0.79050 0.78588 0.76225 1.18701 1.20247 1.17141 1.21082 0.87516 0.83617 0.97799 0.84375 1.86578 1.76661 1.22711 1.49837 1.20738 0.97196 0.97110 0.97899 1.20921 0.93291 0.98647 0.96918 1.21306 0.95249 1.00430 1.00784 1.17990 0.76646 0.99168 1.00725 1.91459 1.29631 1.96149 1.95554 1.21354 0.95238 0.99737 1.01218 1.21157 0.93237 0.97902 0.98094 0.91395 0.90187 0.95963 0.77732 0.91813 0.77060 0.84256 0.83599 0.82771 0.82348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.84 9.34 71.98 0.67 -4.16 16 2 C 0.12 4.27 2.40 44.99 0.11 4.38 16 3 H 0.05 2.24 7.58 -2.39 -0.02 2.23 16 4 N -0.74 -30.00 4.18 -446.82 -1.87 -31.86 16 5 C 0.55 30.07 7.71 86.36 0.67 30.74 16 6 O -0.63 -40.80 14.68 -4.29 -0.06 -40.86 16 7 C -0.57 -31.18 9.54 24.83 0.24 -30.94 16 8 H 0.09 4.22 7.85 -2.91 -0.02 4.20 16 9 C 0.03 1.65 5.50 85.31 0.47 2.12 16 10 N -0.82 -49.92 11.83 21.84 0.26 -49.66 16 11 Si 0.99 40.47 29.56 68.60 2.03 42.50 16 12 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 13 H -0.28 -11.13 7.11 99.48 0.71 -10.42 16 14 H -0.25 -9.37 7.11 99.48 0.71 -8.66 16 15 C 0.16 4.03 3.08 29.85 0.09 4.13 16 16 H 0.14 2.83 8.00 -2.39 -0.02 2.81 16 17 O -0.55 -13.15 12.51 -148.98 -1.86 -15.01 16 18 C -0.13 -3.39 4.88 -19.86 -0.10 -3.49 16 19 C -0.08 -2.13 8.32 22.26 0.19 -1.95 16 20 C -0.16 -4.32 10.03 22.31 0.22 -4.10 16 21 C 0.07 2.05 7.30 22.38 0.16 2.21 16 22 F -0.15 -4.26 17.27 44.97 0.78 -3.48 16 23 C -0.16 -3.85 10.03 22.31 0.22 -3.63 16 24 C -0.09 -2.05 9.67 22.26 0.22 -1.84 16 25 H 0.07 2.06 7.68 -2.38 -0.02 2.04 16 26 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 27 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.39 13.02 5.44 -92.71 -0.50 12.51 16 29 H 0.27 15.08 8.29 -92.71 -0.77 14.31 16 30 H 0.38 7.73 6.12 -74.05 -0.45 7.28 16 31 H 0.14 3.23 5.50 -2.91 -0.02 3.22 16 32 H 0.15 3.47 8.06 -2.91 -0.02 3.45 16 33 H 0.15 2.99 8.06 -2.91 -0.02 2.97 16 34 H 0.16 2.82 8.04 -2.91 -0.02 2.80 16 Total: -1.00 -75.34 296.04 2.62 -72.72 By element: Atomic # 1 Polarization: 31.99 SS G_CDS: 0.19 Total: 32.18 kcal Atomic # 6 Polarization: -9.68 SS G_CDS: 3.16 Total: -6.52 kcal Atomic # 7 Polarization: -79.92 SS G_CDS: -1.61 Total: -81.52 kcal Atomic # 8 Polarization: -53.95 SS G_CDS: -1.93 Total: -55.87 kcal Atomic # 9 Polarization: -4.26 SS G_CDS: 0.78 Total: -3.48 kcal Atomic # 14 Polarization: 40.47 SS G_CDS: 2.03 Total: 42.50 kcal Total: -75.34 2.62 -72.72 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274205703.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.286 kcal (2) G-P(sol) polarization free energy of solvation -75.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds