Wall clock time and date at job start Mon Mar 30 2020 00:34:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46901 * 2 1 4 4 C 1.52998 * 109.47292 * 239.99834 * 2 1 3 5 5 O 1.42902 * 109.46743 * 305.00160 * 4 2 1 6 6 C 1.35901 * 116.99400 * 179.97438 * 5 4 2 7 7 C 1.38768 * 120.04540 * 359.72406 * 6 5 4 8 8 C 1.38135 * 119.99338 * 179.74728 * 7 6 5 9 9 C 1.38253 * 120.08162 * 0.53012 * 8 7 6 10 10 C 1.38483 * 120.08194 * 359.74363 * 9 8 7 11 11 F 1.35095 * 119.99483 * 180.02562 * 10 9 8 12 12 C 1.38381 * 120.00353 * 359.97438 * 10 9 8 13 13 N 1.46496 * 109.47234 * 119.99509 * 2 1 3 14 14 C 1.34777 * 120.00258 * 275.00436 * 13 2 1 15 15 O 1.21682 * 119.99992 * 359.97438 * 14 13 2 16 16 C 1.46376 * 119.99803 * 180.02562 * 14 13 2 17 17 H 1.07995 * 120.00124 * 359.71785 * 16 14 13 18 18 C 1.40050 * 119.99863 * 180.02562 * 16 14 13 19 19 N 1.30676 * 119.99974 * 359.97438 * 18 16 14 20 20 Si 1.86800 * 120.00158 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47057 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47389 * 119.99672 * 20 18 16 23 23 H 1.48495 * 109.47216 * 239.99819 * 20 18 16 24 24 H 1.09001 * 109.47093 * 300.00316 * 1 2 3 25 25 H 1.09002 * 109.47121 * 60.00104 * 1 2 3 26 26 H 1.08994 * 109.47090 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.46999 * 64.99987 * 4 2 1 28 28 H 1.08995 * 109.47446 * 184.99963 * 4 2 1 29 29 H 1.07993 * 120.00289 * 359.97438 * 7 6 5 30 30 H 1.07998 * 119.96416 * 180.26799 * 8 7 6 31 31 H 1.07994 * 119.95974 * 179.77023 * 9 8 7 32 32 H 1.08006 * 120.03818 * 180.02562 * 12 10 9 33 33 H 0.96999 * 119.99694 * 94.99826 * 13 2 1 34 34 H 0.96996 * 119.99793 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 1.4702 -2.0304 -1.3093 6 6 1.8226 -2.8086 -2.3662 7 6 2.6946 -2.3199 -3.3287 8 6 3.0562 -3.1137 -4.3998 9 6 2.5419 -4.3913 -4.5202 10 6 1.6670 -4.8803 -3.5646 11 9 1.1658 -6.1292 -3.6837 12 6 1.3069 -4.0902 -2.4871 13 7 2.0183 -0.6905 1.1962 14 6 2.1470 -0.0181 2.3571 15 8 1.8580 1.1626 2.4116 16 6 2.6355 -0.7080 3.5521 17 1 2.8885 -1.7568 3.5047 18 6 2.7687 -0.0094 4.7587 19 7 2.4573 1.2583 4.8175 20 14 3.3914 -0.8899 6.2839 21 1 3.6715 -2.3108 5.9555 22 1 4.6373 -0.2363 6.7589 23 1 2.3599 -0.8229 7.3500 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.7516 -0.1583 -2.1370 28 1 3.1263 -0.7995 -1.2056 29 1 3.0933 -1.3203 -3.2385 30 1 3.7383 -2.7344 -5.1463 31 1 2.8230 -5.0089 -5.3603 32 1 0.6250 -4.4711 -1.7412 33 1 2.2490 -1.6316 1.1527 34 1 2.5500 1.7422 5.6530 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274636487.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:34:12 Heat of formation + Delta-G solvation = -103.705635 kcal Electronic energy + Delta-G solvation = -19453.590961 eV Core-core repulsion = 16073.096868 eV Total energy + Delta-G solvation = -3380.494093 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.07515 -40.22463 -37.96943 -36.96170 -34.16227 -32.38793 -31.08794 -30.13144 -29.56850 -26.63074 -26.08627 -23.09783 -22.66803 -21.01471 -19.45238 -18.53511 -17.38783 -16.62271 -16.32272 -16.11329 -16.03583 -15.57240 -15.30896 -14.79695 -14.10580 -14.04774 -13.83884 -13.20414 -12.90646 -12.67771 -12.39225 -12.27039 -12.04897 -11.61296 -11.49301 -11.22089 -11.02773 -10.89500 -10.65356 -10.58163 -10.41412 -10.18024 -9.06420 -8.86794 -8.42107 -7.64144 -7.54417 -6.19559 -4.64515 0.95016 1.13267 3.03121 3.12969 3.21478 3.26054 3.42328 4.10063 4.18623 4.54846 4.57948 4.71340 4.80480 4.83234 5.02963 5.17953 5.20469 5.26803 5.44228 5.74465 5.76054 5.90014 5.93937 6.04621 6.11502 6.13936 6.23376 6.51554 6.59688 6.86723 7.29626 7.43512 7.93069 8.08238 8.33233 9.02459 9.52461 10.58768 10.77203 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.026789 B = 0.003839 C = 0.003567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.953766 B = 7292.038449 C = 7847.514832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.156 3.844 3 H 0.095 0.905 4 C 0.053 3.947 5 O -0.299 6.299 6 C 0.169 3.831 7 C -0.222 4.222 8 C -0.051 4.051 9 C -0.200 4.200 10 C 0.137 3.863 11 F -0.137 7.137 12 C -0.193 4.193 13 N -0.760 5.760 14 C 0.555 3.445 15 O -0.581 6.581 16 C -0.544 4.544 17 H 0.068 0.932 18 C 0.088 3.912 19 N -0.768 5.768 20 Si 0.907 3.093 21 H -0.264 1.264 22 H -0.276 1.276 23 H -0.276 1.276 24 H 0.064 0.936 25 H 0.047 0.953 26 H 0.056 0.944 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.136 0.864 30 H 0.134 0.866 31 H 0.133 0.867 32 H 0.144 0.856 33 H 0.384 0.616 34 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.540 -8.641 -16.806 18.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.050 3.950 3 H 0.113 0.887 4 C -0.023 4.023 5 O -0.211 6.211 6 C 0.122 3.878 7 C -0.241 4.241 8 C -0.069 4.069 9 C -0.219 4.219 10 C 0.117 3.883 11 F -0.115 7.115 12 C -0.213 4.213 13 N -0.416 5.416 14 C 0.359 3.641 15 O -0.464 6.464 16 C -0.581 4.581 17 H 0.086 0.914 18 C -0.132 4.132 19 N -0.397 5.397 20 Si 0.732 3.268 21 H -0.188 1.188 22 H -0.202 1.202 23 H -0.202 1.202 24 H 0.083 0.917 25 H 0.066 0.934 26 H 0.075 0.925 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.153 0.847 30 H 0.152 0.848 31 H 0.151 0.849 32 H 0.161 0.839 33 H 0.216 0.784 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.160 -7.658 -16.479 18.172 hybrid contribution 0.453 -0.997 0.566 1.233 sum 0.613 -8.655 -15.913 18.125 Atomic orbital electron populations 1.22115 0.96191 1.01829 1.01478 1.20603 0.94199 0.96556 0.83659 0.88725 1.23411 0.98251 0.80692 0.99928 1.86171 1.66517 1.26849 1.41574 1.18707 0.92047 0.90189 0.86841 1.21398 1.03334 1.02286 0.97079 1.20767 0.97037 0.92475 0.96612 1.20994 1.01925 0.98039 1.00988 1.17289 0.95570 0.79944 0.95454 1.91506 1.85885 1.38336 1.95813 1.20293 1.06860 0.93404 1.00737 1.46188 1.73023 1.13073 1.09305 1.18227 0.77779 0.86378 0.81671 1.90591 1.54973 1.16430 1.84430 1.20928 1.46757 0.97134 0.93314 0.91408 1.25703 0.93308 0.94468 0.99702 1.70030 1.35272 1.08218 1.26172 0.86330 0.78782 0.80340 0.81397 1.18773 1.20177 1.20169 0.91699 0.93444 0.92462 0.91265 0.91256 0.84663 0.84846 0.84865 0.83856 0.78442 0.92193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.75 9.29 37.16 0.35 -2.41 16 2 C 0.16 2.83 2.98 -67.93 -0.20 2.63 16 3 H 0.09 1.87 7.58 -51.93 -0.39 1.47 16 4 C 0.05 0.72 4.48 37.16 0.17 0.88 16 5 O -0.30 -4.27 8.99 -19.43 -0.17 -4.45 16 6 C 0.17 2.14 6.68 -39.23 -0.26 1.88 16 7 C -0.22 -2.35 9.04 -39.42 -0.36 -2.71 16 8 C -0.05 -0.46 10.04 -39.61 -0.40 -0.86 16 9 C -0.20 -1.94 10.02 -39.49 -0.40 -2.34 16 10 C 0.14 1.57 7.30 -39.44 -0.29 1.28 16 11 F -0.14 -1.63 17.27 2.25 0.04 -1.59 16 12 C -0.19 -2.39 9.97 -39.37 -0.39 -2.78 16 13 N -0.76 -16.69 5.05 -55.22 -0.28 -16.96 16 14 C 0.56 15.52 7.71 -12.99 -0.10 15.42 16 15 O -0.58 -18.34 14.68 5.21 0.08 -18.26 16 16 C -0.54 -15.33 9.54 -35.63 -0.34 -15.67 16 17 H 0.07 1.77 7.85 -52.49 -0.41 1.36 16 18 C 0.09 2.44 5.50 -17.36 -0.10 2.35 16 19 N -0.77 -22.89 11.83 55.55 0.66 -22.23 16 20 Si 0.91 20.15 29.56 -169.99 -5.02 15.12 16 21 H -0.26 -5.68 7.11 56.52 0.40 -5.28 16 22 H -0.28 -6.01 7.11 56.52 0.40 -5.60 16 23 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 24 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 25 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.06 0.98 7.56 -51.93 -0.39 0.59 16 27 H 0.07 0.77 7.65 -51.93 -0.40 0.37 16 28 H 0.07 0.90 7.67 -51.93 -0.40 0.50 16 29 H 0.14 1.24 6.30 -52.49 -0.33 0.91 16 30 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 31 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 32 H 0.14 1.70 8.06 -52.48 -0.42 1.28 16 33 H 0.38 7.77 8.36 -40.82 -0.34 7.43 16 34 H 0.27 7.21 8.29 -40.82 -0.34 6.88 16 LS Contribution 302.95 15.07 4.57 4.57 Total: -1.00 -33.31 302.95 -6.37 -39.68 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -3.91 Total: 6.44 kcal Atomic # 6 Polarization: 0.01 SS G_CDS: -2.32 Total: -2.31 kcal Atomic # 7 Polarization: -39.57 SS G_CDS: 0.38 Total: -39.19 kcal Atomic # 8 Polarization: -22.61 SS G_CDS: -0.10 Total: -22.71 kcal Atomic # 9 Polarization: -1.63 SS G_CDS: 0.04 Total: -1.59 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.12 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -33.31 -6.37 -39.68 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274636487.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.028 kcal (2) G-P(sol) polarization free energy of solvation -33.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds