Wall clock time and date at job start Mon Mar 30 2020 00:34:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46901 * 2 1 4 4 C 1.52998 * 109.47292 * 239.99834 * 2 1 3 5 5 O 1.42902 * 109.46743 * 305.00160 * 4 2 1 6 6 C 1.35901 * 116.99400 * 179.97438 * 5 4 2 7 7 C 1.38768 * 120.04540 * 359.72406 * 6 5 4 8 8 C 1.38135 * 119.99338 * 179.74728 * 7 6 5 9 9 C 1.38253 * 120.08162 * 0.53012 * 8 7 6 10 10 C 1.38483 * 120.08194 * 359.74363 * 9 8 7 11 11 F 1.35095 * 119.99483 * 180.02562 * 10 9 8 12 12 C 1.38381 * 120.00353 * 359.97438 * 10 9 8 13 13 N 1.46496 * 109.47234 * 119.99509 * 2 1 3 14 14 C 1.34777 * 120.00258 * 275.00436 * 13 2 1 15 15 O 1.21682 * 119.99992 * 359.97438 * 14 13 2 16 16 C 1.46376 * 119.99803 * 180.02562 * 14 13 2 17 17 H 1.07995 * 120.00124 * 359.71785 * 16 14 13 18 18 C 1.40050 * 119.99863 * 180.02562 * 16 14 13 19 19 N 1.30676 * 119.99974 * 359.97438 * 18 16 14 20 20 Si 1.86800 * 120.00158 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47057 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47389 * 119.99672 * 20 18 16 23 23 H 1.48495 * 109.47216 * 239.99819 * 20 18 16 24 24 H 1.09001 * 109.47093 * 300.00316 * 1 2 3 25 25 H 1.09002 * 109.47121 * 60.00104 * 1 2 3 26 26 H 1.08994 * 109.47090 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.46999 * 64.99987 * 4 2 1 28 28 H 1.08995 * 109.47446 * 184.99963 * 4 2 1 29 29 H 1.07993 * 120.00289 * 359.97438 * 7 6 5 30 30 H 1.07998 * 119.96416 * 180.26799 * 8 7 6 31 31 H 1.07994 * 119.95974 * 179.77023 * 9 8 7 32 32 H 1.08006 * 120.03818 * 180.02562 * 12 10 9 33 33 H 0.96999 * 119.99694 * 94.99826 * 13 2 1 34 34 H 0.96996 * 119.99793 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 1.4702 -2.0304 -1.3093 6 6 1.8226 -2.8086 -2.3662 7 6 2.6946 -2.3199 -3.3287 8 6 3.0562 -3.1137 -4.3998 9 6 2.5419 -4.3913 -4.5202 10 6 1.6670 -4.8803 -3.5646 11 9 1.1658 -6.1292 -3.6837 12 6 1.3069 -4.0902 -2.4871 13 7 2.0183 -0.6905 1.1962 14 6 2.1470 -0.0181 2.3571 15 8 1.8580 1.1626 2.4116 16 6 2.6355 -0.7080 3.5521 17 1 2.8885 -1.7568 3.5047 18 6 2.7687 -0.0094 4.7587 19 7 2.4573 1.2583 4.8175 20 14 3.3914 -0.8899 6.2839 21 1 3.6715 -2.3108 5.9555 22 1 4.6373 -0.2363 6.7589 23 1 2.3599 -0.8229 7.3500 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.7516 -0.1583 -2.1370 28 1 3.1263 -0.7995 -1.2056 29 1 3.0933 -1.3203 -3.2385 30 1 3.7383 -2.7344 -5.1463 31 1 2.8230 -5.0089 -5.3603 32 1 0.6250 -4.4711 -1.7412 33 1 2.2490 -1.6316 1.1527 34 1 2.5500 1.7422 5.6530 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274636487.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:34:11 Heat of formation + Delta-G solvation = -126.400095 kcal Electronic energy + Delta-G solvation = -19454.575067 eV Core-core repulsion = 16073.096868 eV Total energy + Delta-G solvation = -3381.478199 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.95716 -41.19834 -39.58325 -38.26502 -35.86638 -34.51235 -32.14271 -31.52453 -30.59236 -28.18480 -27.82593 -23.99131 -23.70543 -22.56422 -21.10937 -19.56035 -19.26731 -17.66389 -17.50760 -17.20033 -17.04447 -16.96019 -16.55738 -16.09663 -15.90709 -15.20974 -14.84523 -14.70395 -14.44489 -14.17548 -13.76961 -13.43883 -13.33306 -12.96227 -12.84501 -12.74684 -12.62946 -12.50547 -12.10496 -12.00779 -11.87623 -11.78574 -10.94259 -9.90012 -9.83903 -9.47358 -9.28825 -8.28772 -6.84704 0.12667 0.31168 1.39556 1.40201 1.57580 2.02198 2.24835 2.48422 2.60933 3.08933 3.35619 3.62335 3.67744 3.89698 4.01087 4.09501 4.11288 4.26408 4.33407 4.43804 4.49824 4.64493 4.83851 5.01921 5.04614 5.10838 5.24067 5.32469 5.34115 5.38990 5.74014 5.89599 6.23259 6.28296 6.38093 6.87964 7.55004 8.50273 8.68222 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.026789 B = 0.003839 C = 0.003567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.953766 B = 7292.038449 C = 7847.514832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.149 3.851 3 H 0.076 0.924 4 C 0.066 3.934 5 O -0.319 6.319 6 C 0.148 3.852 7 C -0.221 4.221 8 C -0.044 4.044 9 C -0.193 4.193 10 C 0.121 3.879 11 F -0.144 7.144 12 C -0.210 4.210 13 N -0.749 5.749 14 C 0.541 3.459 15 O -0.628 6.628 16 C -0.575 4.575 17 H 0.082 0.918 18 C 0.031 3.969 19 N -0.820 5.820 20 Si 0.995 3.005 21 H -0.250 1.250 22 H -0.267 1.267 23 H -0.269 1.269 24 H 0.023 0.977 25 H 0.081 0.919 26 H 0.059 0.941 27 H 0.104 0.896 28 H 0.078 0.922 29 H 0.153 0.847 30 H 0.170 0.830 31 H 0.158 0.842 32 H 0.135 0.865 33 H 0.393 0.607 34 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.832 -9.952 -18.267 20.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.044 3.956 3 H 0.094 0.906 4 C -0.009 4.009 5 O -0.232 6.232 6 C 0.102 3.898 7 C -0.240 4.240 8 C -0.061 4.061 9 C -0.212 4.212 10 C 0.102 3.898 11 F -0.122 7.122 12 C -0.230 4.230 13 N -0.404 5.404 14 C 0.345 3.655 15 O -0.515 6.515 16 C -0.612 4.612 17 H 0.100 0.900 18 C -0.184 4.184 19 N -0.450 5.450 20 Si 0.815 3.185 21 H -0.173 1.173 22 H -0.191 1.191 23 H -0.194 1.194 24 H 0.042 0.958 25 H 0.100 0.900 26 H 0.078 0.922 27 H 0.122 0.878 28 H 0.096 0.904 29 H 0.170 0.830 30 H 0.187 0.813 31 H 0.175 0.825 32 H 0.153 0.847 33 H 0.226 0.774 34 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.448 -9.013 -17.998 20.180 hybrid contribution 0.028 -0.624 0.880 1.079 sum 1.476 -9.638 -17.118 19.700 Atomic orbital electron populations 1.22004 0.95723 1.01805 1.01117 1.20777 0.94585 0.96120 0.84159 0.90590 1.23187 0.98440 0.80882 0.98387 1.86104 1.67172 1.27062 1.42877 1.18839 0.93526 0.90178 0.87263 1.21669 1.02390 1.03222 0.96707 1.21191 0.96632 0.91760 0.96556 1.21353 1.00495 0.98576 1.00786 1.17493 0.96501 0.79806 0.96010 1.91486 1.86139 1.38741 1.95868 1.20355 1.07412 0.93910 1.01275 1.45879 1.71936 1.13307 1.09233 1.18515 0.77512 0.86038 0.83402 1.90545 1.56952 1.18351 1.85628 1.21460 1.47382 0.98052 0.94316 0.89967 1.26912 0.92809 0.95147 1.03568 1.70181 1.36630 1.10452 1.27714 0.85009 0.78263 0.79283 0.75963 1.17336 1.19146 1.19409 0.95769 0.90009 0.92210 0.87827 0.90362 0.82985 0.81272 0.82468 0.84686 0.77395 0.91591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.21 9.29 71.98 0.67 -4.54 16 2 C 0.15 5.42 2.98 44.99 0.13 5.55 16 3 H 0.08 3.07 7.58 -2.39 -0.02 3.05 16 4 C 0.07 1.68 4.48 71.98 0.32 2.01 16 5 O -0.32 -8.73 8.99 -92.43 -0.83 -9.57 16 6 C 0.15 3.52 6.68 22.50 0.15 3.67 16 7 C -0.22 -3.99 9.04 22.37 0.20 -3.79 16 8 C -0.04 -0.62 10.04 22.25 0.22 -0.40 16 9 C -0.19 -3.15 10.02 22.33 0.22 -2.93 16 10 C 0.12 2.62 7.30 22.36 0.16 2.79 16 11 F -0.14 -3.31 17.27 44.97 0.78 -2.53 16 12 C -0.21 -5.07 9.97 22.41 0.22 -4.84 16 13 N -0.75 -33.49 5.05 -446.84 -2.26 -35.75 16 14 C 0.54 31.25 7.71 86.36 0.67 31.92 16 15 O -0.63 -41.39 14.68 -4.29 -0.06 -41.45 16 16 C -0.58 -32.95 9.54 24.83 0.24 -32.71 16 17 H 0.08 4.30 7.85 -2.91 -0.02 4.27 16 18 C 0.03 1.72 5.50 85.30 0.47 2.19 16 19 N -0.82 -50.21 11.83 21.84 0.26 -49.95 16 20 Si 1.00 41.36 29.56 68.60 2.03 43.39 16 21 H -0.25 -9.73 7.11 99.48 0.71 -9.02 16 22 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 23 H -0.27 -10.79 7.11 99.48 0.71 -10.09 16 24 H 0.02 1.01 8.14 -2.39 -0.02 1.00 16 25 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 26 H 0.06 2.05 7.56 -2.39 -0.02 2.03 16 27 H 0.10 1.96 7.65 -2.38 -0.02 1.94 16 28 H 0.08 1.86 7.67 -2.39 -0.02 1.84 16 29 H 0.15 2.18 6.30 -2.91 -0.02 2.16 16 30 H 0.17 1.20 8.06 -2.91 -0.02 1.18 16 31 H 0.16 1.78 8.06 -2.91 -0.02 1.75 16 32 H 0.14 3.32 8.06 -2.91 -0.02 3.29 16 33 H 0.39 16.01 8.36 -92.71 -0.78 15.24 16 34 H 0.27 15.15 8.29 -92.71 -0.77 14.38 16 Total: -1.00 -75.48 302.95 3.95 -71.54 By element: Atomic # 1 Polarization: 25.05 SS G_CDS: 0.35 Total: 25.40 kcal Atomic # 6 Polarization: -4.76 SS G_CDS: 3.68 Total: -1.08 kcal Atomic # 7 Polarization: -83.71 SS G_CDS: -2.00 Total: -85.71 kcal Atomic # 8 Polarization: -50.12 SS G_CDS: -0.89 Total: -51.02 kcal Atomic # 9 Polarization: -3.31 SS G_CDS: 0.78 Total: -2.53 kcal Atomic # 14 Polarization: 41.36 SS G_CDS: 2.03 Total: 43.39 kcal Total: -75.48 3.95 -71.54 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274636487.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.864 kcal (2) G-P(sol) polarization free energy of solvation -75.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds