Wall clock time and date at job start Mon Mar 30 2020 00:34:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.47137 * 2 1 4 4 C 1.53000 * 109.47172 * 119.99990 * 2 1 3 5 5 O 1.42898 * 109.47116 * 54.99884 * 4 2 1 6 6 C 1.35897 * 116.99822 * 180.02562 * 5 4 2 7 7 C 1.38780 * 120.04314 * 359.72199 * 6 5 4 8 8 C 1.38129 * 119.99020 * 179.74740 * 7 6 5 9 9 C 1.38248 * 120.08362 * 0.53392 * 8 7 6 10 10 C 1.38476 * 120.08591 * 359.74431 * 9 8 7 11 11 F 1.35100 * 119.99922 * 180.02562 * 10 9 8 12 12 C 1.38387 * 120.00352 * 359.97438 * 10 9 8 13 13 N 1.46497 * 109.46988 * 239.99909 * 2 1 3 14 14 C 1.34772 * 119.99912 * 85.00012 * 13 2 1 15 15 O 1.21693 * 120.00351 * 359.97438 * 14 13 2 16 16 C 1.46377 * 120.00001 * 179.97438 * 14 13 2 17 17 H 1.08001 * 119.99977 * 353.94263 * 16 14 13 18 18 C 1.40052 * 119.99963 * 173.94019 * 16 14 13 19 19 N 1.30665 * 119.99926 * 6.14766 * 18 16 14 20 20 Si 1.86800 * 119.99938 * 186.15605 * 18 16 14 21 21 H 1.48503 * 109.47534 * 94.98087 * 20 18 16 22 22 H 1.48500 * 109.47325 * 214.98389 * 20 18 16 23 23 H 1.48503 * 109.47125 * 334.97881 * 20 18 16 24 24 H 1.08996 * 109.46960 * 299.99671 * 1 2 3 25 25 H 1.08997 * 109.47193 * 60.00303 * 1 2 3 26 26 H 1.09001 * 109.47137 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47037 * 175.00127 * 4 2 1 28 28 H 1.09006 * 109.46962 * 294.99864 * 4 2 1 29 29 H 1.07994 * 120.00254 * 0.02562 * 7 6 5 30 30 H 1.08003 * 119.95402 * 180.27631 * 8 7 6 31 31 H 1.08006 * 119.95798 * 179.76803 * 9 8 7 32 32 H 1.07996 * 120.03869 * 180.02562 * 12 10 9 33 33 H 0.97001 * 119.99963 * 264.99559 * 13 2 1 34 34 H 0.97000 * 119.99862 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 8 1.4702 -2.0303 1.3094 6 6 1.8227 -2.8085 2.3663 7 6 2.7037 -2.3239 3.3228 8 6 3.0571 -3.1139 4.3994 9 6 2.5428 -4.3915 4.5198 10 6 1.6679 -4.8806 3.5643 11 9 1.1660 -6.1291 3.6840 12 6 1.3069 -4.0900 2.4874 13 7 2.0183 -0.6906 -1.1961 14 6 2.1470 -0.0183 -2.3571 15 8 1.8572 1.1624 -2.4119 16 6 2.6354 -0.7082 -3.5521 17 1 2.9849 -1.7277 -3.4822 18 6 2.6495 -0.0462 -4.7862 19 7 2.3412 1.2219 -4.8510 20 14 3.1088 -0.9763 -6.3398 21 1 1.8750 -1.4570 -7.0121 22 1 3.8519 -0.0739 -7.2556 23 1 3.9646 -2.1374 -5.9868 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1263 -0.7994 1.2056 28 1 1.7517 -0.1582 2.1370 29 1 3.1094 -1.3276 3.2278 30 1 3.7393 -2.7344 5.1458 31 1 2.8234 -5.0088 5.3605 32 1 0.6243 -4.4707 1.7421 33 1 2.2491 -1.6318 -1.1526 34 1 2.3506 1.6802 -5.7058 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274636489.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:34:15 Heat of formation + Delta-G solvation = -103.751580 kcal Electronic energy + Delta-G solvation = -19454.933035 eV Core-core repulsion = 16074.436950 eV Total energy + Delta-G solvation = -3380.496085 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.07421 -40.22534 -37.97018 -36.96224 -34.16146 -32.39273 -31.08870 -30.13264 -29.56866 -26.63132 -26.08586 -23.09779 -22.66803 -21.01419 -19.45449 -18.53568 -17.38889 -16.62303 -16.32632 -16.11481 -16.03139 -15.57100 -15.30425 -14.79994 -14.11170 -14.04756 -13.83978 -13.20200 -12.90728 -12.67313 -12.39295 -12.27880 -12.04852 -11.61757 -11.48821 -11.22753 -11.01861 -10.90864 -10.65169 -10.58693 -10.39927 -10.20036 -9.06459 -8.85501 -8.42143 -7.64257 -7.54532 -6.20359 -4.64137 0.94976 1.13225 3.03058 3.14151 3.21557 3.24986 3.42278 4.10146 4.18583 4.54566 4.57504 4.72013 4.80404 4.83125 5.02928 5.17882 5.20475 5.26370 5.43865 5.74304 5.75935 5.89969 5.93791 6.04534 6.11025 6.13920 6.23468 6.51534 6.59680 6.86839 7.29602 7.43672 7.92977 8.08022 8.33284 9.02454 9.52288 10.58511 10.76853 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.026833 B = 0.003846 C = 0.003567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.254243 B = 7278.297385 C = 7848.024968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.156 3.844 3 H 0.095 0.905 4 C 0.053 3.947 5 O -0.299 6.299 6 C 0.169 3.831 7 C -0.222 4.222 8 C -0.051 4.051 9 C -0.200 4.200 10 C 0.137 3.863 11 F -0.137 7.137 12 C -0.193 4.193 13 N -0.760 5.760 14 C 0.556 3.444 15 O -0.582 6.582 16 C -0.546 4.546 17 H 0.068 0.932 18 C 0.088 3.912 19 N -0.768 5.768 20 Si 0.907 3.093 21 H -0.273 1.273 22 H -0.279 1.279 23 H -0.265 1.265 24 H 0.047 0.953 25 H 0.064 0.936 26 H 0.056 0.944 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.136 0.864 30 H 0.134 0.866 31 H 0.133 0.867 32 H 0.144 0.856 33 H 0.384 0.616 34 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.525 -8.637 16.815 18.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.050 3.950 3 H 0.113 0.887 4 C -0.023 4.023 5 O -0.211 6.211 6 C 0.122 3.878 7 C -0.241 4.241 8 C -0.069 4.069 9 C -0.219 4.219 10 C 0.117 3.883 11 F -0.115 7.115 12 C -0.213 4.213 13 N -0.416 5.416 14 C 0.360 3.640 15 O -0.465 6.465 16 C -0.583 4.583 17 H 0.086 0.914 18 C -0.131 4.131 19 N -0.397 5.397 20 Si 0.731 3.269 21 H -0.198 1.198 22 H -0.205 1.205 23 H -0.189 1.189 24 H 0.066 0.934 25 H 0.083 0.917 26 H 0.075 0.925 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.153 0.847 30 H 0.152 0.848 31 H 0.151 0.849 32 H 0.161 0.839 33 H 0.216 0.784 34 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.143 -7.652 16.486 18.176 hybrid contribution 0.358 -1.033 -0.579 1.237 sum 0.501 -8.685 15.906 18.130 Atomic orbital electron populations 1.22114 0.96181 1.01835 1.01475 1.20605 0.94214 0.96549 0.83651 0.88728 1.23411 0.98245 0.80694 0.99936 1.86169 1.66535 1.26845 1.41556 1.18710 0.92013 0.90195 0.86873 1.21400 1.03178 1.02420 0.97094 1.20766 0.97082 0.92491 0.96559 1.20992 1.01964 0.97992 1.00994 1.17290 0.95555 0.79950 0.95464 1.91507 1.85851 1.38376 1.95807 1.20293 1.06892 0.93352 1.00752 1.46187 1.73002 1.13062 1.09317 1.18222 0.77873 0.86332 0.81587 1.90593 1.55301 1.16324 1.84251 1.20892 1.45377 1.00125 0.91860 0.91422 1.25693 0.93046 0.94375 1.00010 1.70021 1.35049 1.08879 1.25705 0.86375 0.79063 0.80030 0.81387 1.19797 1.20471 1.18888 0.93444 0.91699 0.92457 0.91264 0.91263 0.84661 0.84846 0.84865 0.83855 0.78431 0.92141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.75 9.29 37.16 0.35 -2.41 16 2 C 0.16 2.83 2.98 -67.93 -0.20 2.63 16 3 H 0.09 1.86 7.58 -51.93 -0.39 1.47 16 4 C 0.05 0.72 4.48 37.16 0.17 0.88 16 5 O -0.30 -4.27 8.99 -19.42 -0.17 -4.45 16 6 C 0.17 2.14 6.69 -39.22 -0.26 1.88 16 7 C -0.22 -2.35 9.04 -39.42 -0.36 -2.71 16 8 C -0.05 -0.46 10.04 -39.62 -0.40 -0.86 16 9 C -0.20 -1.94 10.02 -39.49 -0.40 -2.34 16 10 C 0.14 1.57 7.30 -39.44 -0.29 1.28 16 11 F -0.14 -1.63 17.27 2.25 0.04 -1.59 16 12 C -0.19 -2.38 9.97 -39.37 -0.39 -2.78 16 13 N -0.76 -16.68 5.05 -55.21 -0.28 -16.95 16 14 C 0.56 15.53 7.71 -12.99 -0.10 15.43 16 15 O -0.58 -18.35 14.71 5.19 0.08 -18.27 16 16 C -0.55 -15.37 9.54 -35.63 -0.34 -15.71 16 17 H 0.07 1.77 7.85 -52.49 -0.41 1.35 16 18 C 0.09 2.46 5.49 -17.37 -0.10 2.37 16 19 N -0.77 -22.88 11.85 55.55 0.66 -22.23 16 20 Si 0.91 20.16 29.56 -169.99 -5.03 15.14 16 21 H -0.27 -5.96 7.11 56.52 0.40 -5.55 16 22 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 23 H -0.26 -5.71 7.11 56.52 0.40 -5.30 16 24 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 26 H 0.06 0.98 7.56 -51.93 -0.39 0.59 16 27 H 0.07 0.90 7.65 -51.93 -0.40 0.50 16 28 H 0.07 0.77 7.67 -51.93 -0.40 0.37 16 29 H 0.14 1.24 6.30 -52.49 -0.33 0.91 16 30 H 0.13 0.83 8.06 -52.48 -0.42 0.41 16 31 H 0.13 1.01 8.06 -52.48 -0.42 0.58 16 32 H 0.14 1.70 8.06 -52.49 -0.42 1.28 16 33 H 0.38 7.77 8.36 -40.82 -0.34 7.42 16 34 H 0.27 7.24 8.29 -40.82 -0.34 6.90 16 LS Contribution 303.00 15.07 4.57 4.57 Total: -1.00 -33.29 303.00 -6.37 -39.66 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -3.91 Total: 6.44 kcal Atomic # 6 Polarization: 0.00 SS G_CDS: -2.32 Total: -2.32 kcal Atomic # 7 Polarization: -39.56 SS G_CDS: 0.38 Total: -39.18 kcal Atomic # 8 Polarization: -22.62 SS G_CDS: -0.10 Total: -22.72 kcal Atomic # 9 Polarization: -1.63 SS G_CDS: 0.04 Total: -1.59 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.03 Total: 15.14 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -33.29 -6.37 -39.66 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274636489.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.089 kcal (2) G-P(sol) polarization free energy of solvation -33.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds