Wall clock time and date at job start Mon Mar 30 2020 00:34:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.47137 * 2 1 4 4 C 1.53000 * 109.47172 * 119.99990 * 2 1 3 5 5 O 1.42898 * 109.47116 * 54.99884 * 4 2 1 6 6 C 1.35897 * 116.99822 * 180.02562 * 5 4 2 7 7 C 1.38780 * 120.04314 * 359.72199 * 6 5 4 8 8 C 1.38129 * 119.99020 * 179.74740 * 7 6 5 9 9 C 1.38248 * 120.08362 * 0.53392 * 8 7 6 10 10 C 1.38476 * 120.08591 * 359.74431 * 9 8 7 11 11 F 1.35100 * 119.99922 * 180.02562 * 10 9 8 12 12 C 1.38387 * 120.00352 * 359.97438 * 10 9 8 13 13 N 1.46497 * 109.46988 * 239.99909 * 2 1 3 14 14 C 1.34772 * 119.99912 * 85.00012 * 13 2 1 15 15 O 1.21693 * 120.00351 * 359.97438 * 14 13 2 16 16 C 1.46377 * 120.00001 * 179.97438 * 14 13 2 17 17 H 1.08001 * 119.99977 * 353.94263 * 16 14 13 18 18 C 1.40052 * 119.99963 * 173.94019 * 16 14 13 19 19 N 1.30665 * 119.99926 * 6.14766 * 18 16 14 20 20 Si 1.86800 * 119.99938 * 186.15605 * 18 16 14 21 21 H 1.48503 * 109.47534 * 94.98087 * 20 18 16 22 22 H 1.48500 * 109.47325 * 214.98389 * 20 18 16 23 23 H 1.48503 * 109.47125 * 334.97881 * 20 18 16 24 24 H 1.08996 * 109.46960 * 299.99671 * 1 2 3 25 25 H 1.08997 * 109.47193 * 60.00303 * 1 2 3 26 26 H 1.09001 * 109.47137 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47037 * 175.00127 * 4 2 1 28 28 H 1.09006 * 109.46962 * 294.99864 * 4 2 1 29 29 H 1.07994 * 120.00254 * 0.02562 * 7 6 5 30 30 H 1.08003 * 119.95402 * 180.27631 * 8 7 6 31 31 H 1.08006 * 119.95798 * 179.76803 * 9 8 7 32 32 H 1.07996 * 120.03869 * 180.02562 * 12 10 9 33 33 H 0.97001 * 119.99963 * 264.99559 * 13 2 1 34 34 H 0.97000 * 119.99862 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 8 1.4702 -2.0303 1.3094 6 6 1.8227 -2.8085 2.3663 7 6 2.7037 -2.3239 3.3228 8 6 3.0571 -3.1139 4.3994 9 6 2.5428 -4.3915 4.5198 10 6 1.6679 -4.8806 3.5643 11 9 1.1660 -6.1291 3.6840 12 6 1.3069 -4.0900 2.4874 13 7 2.0183 -0.6906 -1.1961 14 6 2.1470 -0.0183 -2.3571 15 8 1.8572 1.1624 -2.4119 16 6 2.6354 -0.7082 -3.5521 17 1 2.9849 -1.7277 -3.4822 18 6 2.6495 -0.0462 -4.7862 19 7 2.3412 1.2219 -4.8510 20 14 3.1088 -0.9763 -6.3398 21 1 1.8750 -1.4570 -7.0121 22 1 3.8519 -0.0739 -7.2556 23 1 3.9646 -2.1374 -5.9868 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1263 -0.7994 1.2056 28 1 1.7517 -0.1582 2.1370 29 1 3.1094 -1.3276 3.2278 30 1 3.7393 -2.7344 5.1458 31 1 2.8234 -5.0088 5.3605 32 1 0.6243 -4.4707 1.7421 33 1 2.2491 -1.6318 -1.1526 34 1 2.3506 1.6802 -5.7058 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274636489.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:34:14 Heat of formation + Delta-G solvation = -126.437812 kcal Electronic energy + Delta-G solvation = -19455.916784 eV Core-core repulsion = 16074.436950 eV Total energy + Delta-G solvation = -3381.479834 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.95587 -41.19848 -39.58323 -38.26515 -35.86568 -34.51755 -32.14322 -31.52535 -30.59190 -28.18420 -27.82636 -23.99043 -23.70493 -22.56402 -21.11125 -19.56005 -19.26882 -17.66253 -17.50598 -17.20449 -17.04105 -16.95424 -16.55606 -16.10225 -15.91431 -15.20650 -14.84397 -14.70385 -14.43985 -14.18824 -13.76649 -13.44220 -13.33939 -12.96878 -12.85341 -12.73874 -12.61118 -12.50756 -12.10591 -12.02908 -11.88277 -11.77883 -10.92993 -9.90016 -9.83942 -9.47484 -9.28805 -8.29631 -6.84282 0.12678 0.31180 1.39874 1.40729 1.56383 2.02209 2.24758 2.48365 2.60941 3.08758 3.35658 3.61486 3.67579 3.89664 4.01071 4.09469 4.11373 4.26401 4.33426 4.43820 4.49785 4.64355 4.83814 5.01936 5.04529 5.10839 5.24091 5.32402 5.34202 5.39016 5.74027 5.89584 6.23156 6.28297 6.38093 6.87922 7.54886 8.49951 8.67821 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.026833 B = 0.003846 C = 0.003567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.254243 B = 7278.297385 C = 7848.024968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.149 3.851 3 H 0.076 0.924 4 C 0.066 3.934 5 O -0.319 6.319 6 C 0.148 3.852 7 C -0.221 4.221 8 C -0.044 4.044 9 C -0.193 4.193 10 C 0.121 3.879 11 F -0.144 7.144 12 C -0.210 4.210 13 N -0.749 5.749 14 C 0.542 3.458 15 O -0.628 6.628 16 C -0.577 4.577 17 H 0.083 0.917 18 C 0.031 3.969 19 N -0.820 5.820 20 Si 0.995 3.005 21 H -0.265 1.265 22 H -0.271 1.271 23 H -0.250 1.250 24 H 0.081 0.919 25 H 0.023 0.977 26 H 0.059 0.941 27 H 0.078 0.922 28 H 0.104 0.896 29 H 0.153 0.847 30 H 0.170 0.830 31 H 0.158 0.842 32 H 0.135 0.865 33 H 0.393 0.607 34 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.729 -9.985 18.264 20.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.044 3.956 3 H 0.094 0.906 4 C -0.009 4.009 5 O -0.232 6.232 6 C 0.102 3.898 7 C -0.240 4.240 8 C -0.061 4.061 9 C -0.212 4.212 10 C 0.102 3.898 11 F -0.122 7.122 12 C -0.229 4.229 13 N -0.403 5.403 14 C 0.346 3.654 15 O -0.515 6.515 16 C -0.613 4.613 17 H 0.101 0.899 18 C -0.184 4.184 19 N -0.449 5.449 20 Si 0.814 3.186 21 H -0.190 1.190 22 H -0.196 1.196 23 H -0.174 1.174 24 H 0.100 0.900 25 H 0.042 0.958 26 H 0.078 0.922 27 H 0.097 0.903 28 H 0.122 0.878 29 H 0.170 0.830 30 H 0.187 0.813 31 H 0.175 0.825 32 H 0.153 0.847 33 H 0.226 0.774 34 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.346 -9.045 17.992 20.183 hybrid contribution -0.030 -0.646 -0.886 1.097 sum 1.316 -9.691 17.106 19.704 Atomic orbital electron populations 1.22004 0.95735 1.01804 1.01102 1.20780 0.94582 0.96126 0.84155 0.90572 1.23188 0.98445 0.80879 0.98385 1.86102 1.67191 1.27061 1.42860 1.18842 0.93490 0.90183 0.87293 1.21671 1.02233 1.03344 0.96738 1.21189 0.96673 0.91772 0.96506 1.21351 1.00531 0.98533 1.00793 1.17494 0.96488 0.79811 0.96021 1.91488 1.86106 1.38782 1.95862 1.20355 1.07446 0.93858 1.01290 1.45876 1.71909 1.13302 1.09238 1.18511 0.77633 0.85980 0.83306 1.90547 1.57276 1.18251 1.85456 1.21431 1.46046 1.00997 0.92872 0.89934 1.26904 0.92207 0.95207 1.04056 1.70173 1.36381 1.11172 1.27211 0.85053 0.79083 0.78629 0.75812 1.18967 1.19555 1.17357 0.90007 0.95796 0.92211 0.90349 0.87829 0.82985 0.81271 0.82467 0.84687 0.77378 0.91574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.21 9.29 71.98 0.67 -4.54 16 2 C 0.15 5.42 2.98 44.99 0.13 5.55 16 3 H 0.08 3.07 7.58 -2.39 -0.02 3.05 16 4 C 0.07 1.68 4.48 71.98 0.32 2.00 16 5 O -0.32 -8.73 8.99 -92.40 -0.83 -9.56 16 6 C 0.15 3.52 6.69 22.50 0.15 3.67 16 7 C -0.22 -3.99 9.04 22.37 0.20 -3.78 16 8 C -0.04 -0.62 10.04 22.25 0.22 -0.39 16 9 C -0.19 -3.15 10.02 22.33 0.22 -2.93 16 10 C 0.12 2.62 7.30 22.36 0.16 2.78 16 11 F -0.14 -3.31 17.27 44.97 0.78 -2.53 16 12 C -0.21 -5.06 9.97 22.41 0.22 -4.84 16 13 N -0.75 -33.46 5.05 -446.82 -2.26 -35.72 16 14 C 0.54 31.26 7.71 86.36 0.67 31.93 16 15 O -0.63 -41.41 14.71 -4.33 -0.06 -41.48 16 16 C -0.58 -33.02 9.54 24.83 0.24 -32.79 16 17 H 0.08 4.30 7.85 -2.91 -0.02 4.28 16 18 C 0.03 1.77 5.49 85.31 0.47 2.24 16 19 N -0.82 -50.22 11.85 21.84 0.26 -49.96 16 20 Si 0.99 41.39 29.56 68.60 2.03 43.42 16 21 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 22 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 23 H -0.25 -9.73 7.11 99.48 0.71 -9.02 16 24 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 25 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 26 H 0.06 2.05 7.56 -2.39 -0.02 2.03 16 27 H 0.08 1.86 7.65 -2.39 -0.02 1.84 16 28 H 0.10 1.95 7.67 -2.38 -0.02 1.94 16 29 H 0.15 2.18 6.30 -2.91 -0.02 2.16 16 30 H 0.17 1.20 8.06 -2.91 -0.02 1.17 16 31 H 0.16 1.77 8.06 -2.91 -0.02 1.75 16 32 H 0.14 3.31 8.06 -2.91 -0.02 3.29 16 33 H 0.39 16.00 8.36 -92.71 -0.78 15.23 16 34 H 0.27 15.20 8.29 -92.71 -0.77 14.43 16 Total: -1.00 -75.47 303.00 3.95 -71.52 By element: Atomic # 1 Polarization: 25.06 SS G_CDS: 0.35 Total: 25.41 kcal Atomic # 6 Polarization: -4.79 SS G_CDS: 3.68 Total: -1.11 kcal Atomic # 7 Polarization: -83.68 SS G_CDS: -2.00 Total: -85.68 kcal Atomic # 8 Polarization: -50.14 SS G_CDS: -0.89 Total: -51.04 kcal Atomic # 9 Polarization: -3.31 SS G_CDS: 0.78 Total: -2.53 kcal Atomic # 14 Polarization: 41.39 SS G_CDS: 2.03 Total: 43.42 kcal Total: -75.47 3.95 -71.52 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274636489.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.914 kcal (2) G-P(sol) polarization free energy of solvation -75.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds