Wall clock time and date at job start Mon Mar 30 2020 00:28:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.47227 * 2 1 4 4 N 1.46496 * 109.47532 * 120.00751 * 2 1 3 5 5 C 1.34776 * 119.99761 * 275.00023 * 4 2 1 6 6 O 1.21694 * 119.99905 * 359.97438 * 5 4 2 7 7 C 1.46374 * 120.00218 * 179.97438 * 5 4 2 8 8 H 1.08003 * 119.99729 * 359.97438 * 7 5 4 9 9 C 1.40051 * 120.00173 * 179.97438 * 7 5 4 10 10 N 1.30670 * 120.00046 * 359.97438 * 9 7 5 11 11 Si 1.86803 * 119.99962 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47039 * 359.97438 * 11 9 7 13 13 H 1.48496 * 109.47017 * 119.99843 * 11 9 7 14 14 H 1.48499 * 109.46917 * 240.00038 * 11 9 7 15 15 C 1.53008 * 109.46633 * 240.00196 * 2 1 3 16 16 H 1.08999 * 109.46885 * 65.00555 * 15 2 1 17 17 O 1.42900 * 109.47272 * 305.00182 * 15 2 1 18 18 C 1.50702 * 109.46908 * 185.00081 * 15 2 1 19 19 C 1.38264 * 119.98681 * 85.02375 * 18 15 2 20 20 C 1.38229 * 120.04919 * 180.02562 * 19 18 15 21 21 C 1.38222 * 120.02563 * 359.97438 * 20 19 18 22 22 C 1.38435 * 119.97557 * 359.97438 * 21 20 19 23 23 F 1.35093 * 120.02480 * 180.02562 * 22 21 20 24 24 C 1.38175 * 119.98427 * 265.00100 * 18 15 2 25 25 H 1.08996 * 109.47715 * 179.97438 * 1 2 3 26 26 H 1.09007 * 109.46562 * 299.99752 * 1 2 3 27 27 H 1.09005 * 109.47446 * 59.99396 * 1 2 3 28 28 H 0.97000 * 120.00245 * 94.99274 * 4 2 1 29 29 H 0.96995 * 119.99558 * 179.97438 * 10 9 7 30 30 H 0.96695 * 113.99513 * 299.99896 * 17 15 2 31 31 H 1.08001 * 119.97634 * 359.97438 * 19 18 15 32 32 H 1.07995 * 119.98318 * 180.02562 * 20 19 18 33 33 H 1.07997 * 120.01105 * 180.02562 * 21 20 19 34 34 H 1.08001 * 120.01835 * 359.72954 * 24 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6907 1.1960 5 6 2.1471 -0.0185 2.3570 6 8 1.8581 1.1624 2.4117 7 6 2.6346 -0.7087 3.5522 8 1 2.8907 -1.7568 3.5038 9 6 2.7689 -0.0100 4.7586 10 7 2.4595 1.2582 4.8170 11 14 3.3917 -0.8907 6.2837 12 1 3.6706 -2.3118 5.9554 13 1 4.6383 -0.2378 6.7579 14 1 2.3606 -0.8227 7.3502 15 6 2.0399 -0.7213 -1.2494 16 1 1.7515 -0.1582 -2.1370 17 8 1.4700 -2.0303 -1.3096 18 6 3.5418 -0.8295 -1.1891 19 6 4.1323 -1.8764 -0.5058 20 6 5.5098 -1.9766 -0.4492 21 6 6.2985 -1.0304 -1.0762 22 6 5.7083 0.0177 -1.7616 23 9 6.4781 0.9428 -2.3752 24 6 4.3281 0.1174 -1.8171 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8900 28 1 2.2490 -1.6319 1.1524 29 1 2.5521 1.7420 5.6526 30 1 1.6856 -2.5884 -0.5500 31 1 3.5169 -2.6160 -0.0152 32 1 5.9699 -2.7950 0.0845 33 1 7.3747 -1.1091 -1.0322 34 1 3.8666 0.9325 -2.3547 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000275058306.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:28:17 Heat of formation + Delta-G solvation = -115.155572 kcal Electronic energy + Delta-G solvation = -20425.763488 eV Core-core repulsion = 17044.772888 eV Total energy + Delta-G solvation = -3380.990600 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.80122 -39.82350 -37.69898 -36.41972 -33.50603 -32.36614 -31.46825 -30.28535 -29.74124 -26.16057 -25.99215 -22.74099 -22.12263 -20.99862 -19.34614 -17.98101 -17.55403 -16.38933 -16.12597 -15.90301 -15.48899 -15.44925 -14.95054 -14.56535 -13.83201 -13.68078 -13.49846 -13.25706 -12.82449 -12.43553 -12.29778 -11.93179 -11.75709 -11.59721 -11.52769 -11.27177 -11.04036 -10.94366 -10.55564 -10.48609 -10.21543 -9.90378 -8.90372 -8.85421 -8.54641 -7.66645 -7.58355 -6.22214 -4.67872 1.24642 1.30050 3.09939 3.18278 3.21984 3.64304 4.05861 4.24028 4.47825 4.56058 4.60965 4.77596 4.83035 5.05391 5.16709 5.24132 5.46262 5.59679 5.69068 5.84169 5.95431 6.07193 6.11667 6.16953 6.25257 6.36524 6.50368 6.61219 6.82456 6.96401 7.39524 7.59242 7.83629 8.02420 8.26678 8.99163 9.45462 10.56265 10.74864 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.016705 B = 0.006545 C = 0.005539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.694327 B = 4276.797695 C = 5054.262542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.125 3.875 3 H 0.085 0.915 4 N -0.759 5.759 5 C 0.558 3.442 6 O -0.577 6.577 7 C -0.544 4.544 8 H 0.066 0.934 9 C 0.088 3.912 10 N -0.767 5.767 11 Si 0.905 3.095 12 H -0.264 1.264 13 H -0.277 1.277 14 H -0.276 1.276 15 C 0.139 3.861 16 H 0.114 0.886 17 O -0.551 6.551 18 C -0.072 4.072 19 C -0.109 4.109 20 C -0.084 4.084 21 C -0.158 4.158 22 C 0.097 3.903 23 F -0.143 7.143 24 C -0.146 4.146 25 H 0.055 0.945 26 H 0.063 0.937 27 H 0.048 0.952 28 H 0.372 0.628 29 H 0.268 0.732 30 H 0.373 0.627 31 H 0.125 0.875 32 H 0.133 0.867 33 H 0.132 0.868 34 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.748 -7.028 -10.887 13.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.018 3.982 3 H 0.103 0.897 4 N -0.416 5.416 5 C 0.362 3.638 6 O -0.460 6.460 7 C -0.582 4.582 8 H 0.085 0.915 9 C -0.132 4.132 10 N -0.395 5.395 11 Si 0.730 3.270 12 H -0.188 1.188 13 H -0.202 1.202 14 H -0.202 1.202 15 C 0.079 3.921 16 H 0.131 0.869 17 O -0.357 6.357 18 C -0.072 4.072 19 C -0.128 4.128 20 C -0.102 4.102 21 C -0.177 4.177 22 C 0.078 3.922 23 F -0.122 7.122 24 C -0.164 4.164 25 H 0.074 0.926 26 H 0.082 0.918 27 H 0.067 0.933 28 H 0.205 0.795 29 H 0.078 0.922 30 H 0.221 0.779 31 H 0.143 0.857 32 H 0.151 0.849 33 H 0.150 0.850 34 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 3.309 -5.700 -11.319 13.098 hybrid contribution 0.899 -0.779 1.267 1.738 sum 4.208 -6.480 -10.052 12.678 Atomic orbital electron populations 1.22062 0.95790 1.01724 1.01515 1.21152 0.93960 0.97973 0.85078 0.89734 1.46207 1.73394 1.12362 1.09640 1.18178 0.77708 0.86374 0.81497 1.90605 1.54688 1.16395 1.84303 1.20881 1.46903 0.97044 0.93322 0.91535 1.25692 0.93339 0.94450 0.99697 1.70022 1.35191 1.08162 1.26163 0.86355 0.78833 0.80283 0.81522 1.18790 1.20202 1.20162 1.21267 0.86651 0.84666 0.99473 0.86884 1.86577 1.75797 1.24774 1.48526 1.20323 0.96718 0.94380 0.95826 1.20867 0.94944 0.98337 0.98618 1.20939 0.93401 0.98308 0.97534 1.21090 1.00872 0.95272 1.00433 1.17625 0.88735 0.88796 0.97044 1.91476 1.75231 1.64524 1.80985 1.20874 0.91745 1.00866 1.02962 0.92585 0.91792 0.93259 0.79549 0.92167 0.77896 0.85707 0.84933 0.85031 0.84854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.61 9.29 37.16 0.35 -2.26 16 2 C 0.13 2.24 2.47 -67.93 -0.17 2.07 16 3 H 0.08 1.75 7.58 -51.93 -0.39 1.36 16 4 N -0.76 -15.54 4.27 -55.22 -0.24 -15.78 16 5 C 0.56 15.14 7.71 -12.99 -0.10 15.04 16 6 O -0.58 -18.11 14.68 5.19 0.08 -18.04 16 7 C -0.54 -14.84 9.54 -35.63 -0.34 -15.18 16 8 H 0.07 1.65 7.85 -52.48 -0.41 1.24 16 9 C 0.09 2.41 5.50 -17.37 -0.10 2.31 16 10 N -0.77 -22.69 11.83 55.55 0.66 -22.03 16 11 Si 0.91 19.79 29.56 -169.99 -5.02 14.77 16 12 H -0.26 -5.53 7.11 56.52 0.40 -5.12 16 13 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 14 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 15 C 0.14 1.96 3.12 -27.88 -0.09 1.88 16 16 H 0.11 1.42 8.05 -51.93 -0.42 1.00 16 17 O -0.55 -7.33 12.26 -35.23 -0.43 -7.77 16 18 C -0.07 -1.04 4.77 -104.63 -0.50 -1.54 16 19 C -0.11 -1.48 8.17 -39.57 -0.32 -1.80 16 20 C -0.08 -1.07 10.04 -39.59 -0.40 -1.46 16 21 C -0.16 -2.09 10.03 -39.51 -0.40 -2.49 16 22 C 0.10 1.42 7.30 -39.42 -0.29 1.13 16 23 F -0.14 -2.13 17.27 2.25 0.04 -2.09 16 24 C -0.15 -2.11 9.66 -39.51 -0.38 -2.49 16 25 H 0.06 0.90 7.56 -51.93 -0.39 0.50 16 26 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 27 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.37 6.52 5.60 -40.82 -0.23 6.30 16 29 H 0.27 7.20 8.29 -40.82 -0.34 6.86 16 30 H 0.37 4.21 6.25 45.56 0.28 4.49 16 31 H 0.13 1.44 5.63 -52.49 -0.30 1.15 16 32 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 33 H 0.13 1.45 8.06 -52.49 -0.42 1.03 16 34 H 0.13 1.70 8.06 -52.49 -0.42 1.28 16 LS Contribution 296.05 15.07 4.46 4.46 Total: -1.00 -33.92 296.05 -6.29 -40.21 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: -3.10 Total: 11.05 kcal Atomic # 6 Polarization: -2.05 SS G_CDS: -2.73 Total: -4.78 kcal Atomic # 7 Polarization: -38.23 SS G_CDS: 0.42 Total: -37.81 kcal Atomic # 8 Polarization: -25.45 SS G_CDS: -0.36 Total: -25.80 kcal Atomic # 9 Polarization: -2.13 SS G_CDS: 0.04 Total: -2.09 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.02 Total: 14.77 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -33.92 -6.29 -40.21 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275058306.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.947 kcal (2) G-P(sol) polarization free energy of solvation -33.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds