Wall clock time and date at job start Mon Mar 30 2020 00:28:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.47227 * 2 1 4 4 N 1.46496 * 109.47532 * 120.00751 * 2 1 3 5 5 C 1.34776 * 119.99761 * 275.00023 * 4 2 1 6 6 O 1.21694 * 119.99905 * 359.97438 * 5 4 2 7 7 C 1.46374 * 120.00218 * 179.97438 * 5 4 2 8 8 H 1.08003 * 119.99729 * 359.97438 * 7 5 4 9 9 C 1.40051 * 120.00173 * 179.97438 * 7 5 4 10 10 N 1.30670 * 120.00046 * 359.97438 * 9 7 5 11 11 Si 1.86803 * 119.99962 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47039 * 359.97438 * 11 9 7 13 13 H 1.48496 * 109.47017 * 119.99843 * 11 9 7 14 14 H 1.48499 * 109.46917 * 240.00038 * 11 9 7 15 15 C 1.53008 * 109.46633 * 240.00196 * 2 1 3 16 16 H 1.08999 * 109.46885 * 65.00555 * 15 2 1 17 17 O 1.42900 * 109.47272 * 305.00182 * 15 2 1 18 18 C 1.50702 * 109.46908 * 185.00081 * 15 2 1 19 19 C 1.38264 * 119.98681 * 85.02375 * 18 15 2 20 20 C 1.38229 * 120.04919 * 180.02562 * 19 18 15 21 21 C 1.38222 * 120.02563 * 359.97438 * 20 19 18 22 22 C 1.38435 * 119.97557 * 359.97438 * 21 20 19 23 23 F 1.35093 * 120.02480 * 180.02562 * 22 21 20 24 24 C 1.38175 * 119.98427 * 265.00100 * 18 15 2 25 25 H 1.08996 * 109.47715 * 179.97438 * 1 2 3 26 26 H 1.09007 * 109.46562 * 299.99752 * 1 2 3 27 27 H 1.09005 * 109.47446 * 59.99396 * 1 2 3 28 28 H 0.97000 * 120.00245 * 94.99274 * 4 2 1 29 29 H 0.96995 * 119.99558 * 179.97438 * 10 9 7 30 30 H 0.96695 * 113.99513 * 299.99896 * 17 15 2 31 31 H 1.08001 * 119.97634 * 359.97438 * 19 18 15 32 32 H 1.07995 * 119.98318 * 180.02562 * 20 19 18 33 33 H 1.07997 * 120.01105 * 180.02562 * 21 20 19 34 34 H 1.08001 * 120.01835 * 359.72954 * 24 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6907 1.1960 5 6 2.1471 -0.0185 2.3570 6 8 1.8581 1.1624 2.4117 7 6 2.6346 -0.7087 3.5522 8 1 2.8907 -1.7568 3.5038 9 6 2.7689 -0.0100 4.7586 10 7 2.4595 1.2582 4.8170 11 14 3.3917 -0.8907 6.2837 12 1 3.6706 -2.3118 5.9554 13 1 4.6383 -0.2378 6.7579 14 1 2.3606 -0.8227 7.3502 15 6 2.0399 -0.7213 -1.2494 16 1 1.7515 -0.1582 -2.1370 17 8 1.4700 -2.0303 -1.3096 18 6 3.5418 -0.8295 -1.1891 19 6 4.1323 -1.8764 -0.5058 20 6 5.5098 -1.9766 -0.4492 21 6 6.2985 -1.0304 -1.0762 22 6 5.7083 0.0177 -1.7616 23 9 6.4781 0.9428 -2.3752 24 6 4.3281 0.1174 -1.8171 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8900 28 1 2.2490 -1.6319 1.1524 29 1 2.5521 1.7420 5.6526 30 1 1.6856 -2.5884 -0.5500 31 1 3.5169 -2.6160 -0.0152 32 1 5.9699 -2.7950 0.0845 33 1 7.3747 -1.1091 -1.0322 34 1 3.8666 0.9325 -2.3547 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000275058306.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:28:16 Heat of formation + Delta-G solvation = -139.702296 kcal Electronic energy + Delta-G solvation = -20426.827913 eV Core-core repulsion = 17044.772888 eV Total energy + Delta-G solvation = -3382.055025 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.92622 -41.03912 -39.26513 -37.91260 -35.15686 -34.38194 -32.65854 -31.45195 -31.25467 -28.15930 -27.21348 -23.80562 -23.54885 -22.37925 -21.07108 -19.55440 -18.86368 -17.65792 -17.54520 -17.18548 -17.04252 -16.61492 -16.33193 -16.07050 -15.27982 -15.03041 -14.92056 -14.65343 -14.31844 -13.88026 -13.72730 -13.35718 -13.14883 -13.02913 -12.82095 -12.72154 -12.61613 -12.56572 -12.31273 -11.98540 -11.82129 -11.11566 -10.93172 -9.95445 -9.80223 -9.63609 -9.42802 -8.26313 -6.81305 0.16876 0.24307 1.40594 1.41217 1.58163 2.24870 2.51747 2.57298 3.00667 3.20849 3.43233 3.59176 3.68607 3.81758 3.89034 4.08296 4.19126 4.36771 4.43609 4.52227 4.60041 4.82689 4.90742 5.05937 5.08176 5.13398 5.32464 5.34913 5.37789 5.47079 5.90933 5.92415 6.25061 6.29530 6.62022 6.90796 7.57885 8.54319 8.72115 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.016705 B = 0.006545 C = 0.005539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.694327 B = 4276.797695 C = 5054.262542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.124 3.876 3 H 0.051 0.949 4 N -0.741 5.741 5 C 0.545 3.455 6 O -0.631 6.631 7 C -0.569 4.569 8 H 0.090 0.910 9 C 0.029 3.971 10 N -0.824 5.824 11 Si 0.992 3.008 12 H -0.242 1.242 13 H -0.273 1.273 14 H -0.272 1.272 15 C 0.158 3.842 16 H 0.132 0.868 17 O -0.548 6.548 18 C -0.089 4.089 19 C -0.119 4.119 20 C -0.086 4.086 21 C -0.160 4.160 22 C 0.075 3.925 23 F -0.150 7.150 24 C -0.159 4.159 25 H 0.071 0.929 26 H 0.022 0.978 27 H 0.076 0.924 28 H 0.390 0.610 29 H 0.272 0.728 30 H 0.382 0.618 31 H 0.144 0.856 32 H 0.163 0.837 33 H 0.153 0.847 34 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.481 -9.642 -10.861 15.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.018 3.982 3 H 0.069 0.931 4 N -0.397 5.397 5 C 0.349 3.651 6 O -0.518 6.518 7 C -0.606 4.606 8 H 0.108 0.892 9 C -0.186 4.186 10 N -0.453 5.453 11 Si 0.812 3.188 12 H -0.165 1.165 13 H -0.198 1.198 14 H -0.197 1.197 15 C 0.098 3.902 16 H 0.150 0.850 17 O -0.355 6.355 18 C -0.090 4.090 19 C -0.137 4.137 20 C -0.104 4.104 21 C -0.179 4.179 22 C 0.056 3.944 23 F -0.128 7.128 24 C -0.178 4.178 25 H 0.090 0.910 26 H 0.042 0.958 27 H 0.095 0.905 28 H 0.225 0.775 29 H 0.082 0.918 30 H 0.232 0.768 31 H 0.162 0.838 32 H 0.180 0.820 33 H 0.170 0.830 34 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 4.040 -8.377 -11.345 14.670 hybrid contribution 0.666 0.020 1.176 1.352 sum 4.706 -8.356 -10.169 13.978 Atomic orbital electron populations 1.21974 0.95036 1.02456 1.00875 1.21260 0.94516 0.96662 0.85771 0.93126 1.45743 1.72129 1.12958 1.08900 1.18504 0.77330 0.85936 0.83352 1.90567 1.56855 1.18747 1.85617 1.21443 1.46995 0.98237 0.93904 0.89217 1.26925 0.92893 0.95068 1.03717 1.70202 1.37036 1.10572 1.27533 0.85052 0.77976 0.79659 0.76132 1.16505 1.19830 1.19703 1.21032 0.86585 0.84825 0.97727 0.85007 1.86582 1.75647 1.24184 1.49048 1.20428 0.96747 0.95062 0.96730 1.21226 0.95836 0.98411 0.98270 1.21336 0.93177 0.98804 0.97094 1.21437 1.02222 0.94663 0.99555 1.17902 0.88986 0.89506 0.98025 1.91455 1.75318 1.64858 1.81219 1.21088 0.92077 1.01319 1.03346 0.91037 0.95848 0.90492 0.77527 0.91848 0.76790 0.83794 0.81992 0.82960 0.84066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.90 9.29 71.98 0.67 -4.23 16 2 C 0.12 4.42 2.47 44.99 0.11 4.54 16 3 H 0.05 2.17 7.58 -2.39 -0.02 2.16 16 4 N -0.74 -30.07 4.27 -446.82 -1.91 -31.97 16 5 C 0.54 30.07 7.71 86.36 0.67 30.74 16 6 O -0.63 -41.27 14.68 -4.33 -0.06 -41.33 16 7 C -0.57 -30.84 9.54 24.83 0.24 -30.60 16 8 H 0.09 4.27 7.85 -2.91 -0.02 4.25 16 9 C 0.03 1.57 5.50 85.31 0.47 2.04 16 10 N -0.82 -50.04 11.83 21.84 0.26 -49.78 16 11 Si 0.99 40.04 29.56 68.60 2.03 42.07 16 12 H -0.24 -8.83 7.11 99.48 0.71 -8.13 16 13 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 14 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16 15 C 0.16 4.19 3.12 29.85 0.09 4.29 16 16 H 0.13 3.04 8.05 -2.39 -0.02 3.02 16 17 O -0.55 -13.00 12.26 -148.98 -1.83 -14.82 16 18 C -0.09 -2.45 4.77 -19.87 -0.09 -2.54 16 19 C -0.12 -2.95 8.17 22.27 0.18 -2.77 16 20 C -0.09 -1.97 10.04 22.26 0.22 -1.75 16 21 C -0.16 -3.96 10.03 22.31 0.22 -3.73 16 22 C 0.07 2.14 7.30 22.38 0.16 2.31 16 23 F -0.15 -4.42 17.27 44.97 0.78 -3.64 16 24 C -0.16 -4.54 9.66 22.31 0.22 -4.32 16 25 H 0.07 2.17 7.56 -2.39 -0.02 2.15 16 26 H 0.02 0.95 8.14 -2.38 -0.02 0.93 16 27 H 0.08 2.15 8.14 -2.38 -0.02 2.13 16 28 H 0.39 12.97 5.60 -92.71 -0.52 12.45 16 29 H 0.27 15.03 8.29 -92.71 -0.77 14.26 16 30 H 0.38 7.40 6.25 -74.06 -0.46 6.94 16 31 H 0.14 2.86 5.63 -2.91 -0.02 2.85 16 32 H 0.16 2.67 8.06 -2.91 -0.02 2.64 16 33 H 0.15 3.01 8.06 -2.91 -0.02 2.99 16 34 H 0.14 3.60 8.06 -2.91 -0.02 3.58 16 Total: -1.00 -75.96 296.05 2.59 -73.37 By element: Atomic # 1 Polarization: 31.99 SS G_CDS: 0.17 Total: 32.15 kcal Atomic # 6 Polarization: -9.20 SS G_CDS: 3.16 Total: -6.05 kcal Atomic # 7 Polarization: -80.10 SS G_CDS: -1.65 Total: -81.75 kcal Atomic # 8 Polarization: -54.26 SS G_CDS: -1.89 Total: -56.15 kcal Atomic # 9 Polarization: -4.42 SS G_CDS: 0.78 Total: -3.64 kcal Atomic # 14 Polarization: 40.04 SS G_CDS: 2.03 Total: 42.07 kcal Total: -75.96 2.59 -73.37 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275058306.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.330 kcal (2) G-P(sol) polarization free energy of solvation -75.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds