Wall clock time and date at job start Mon Mar 30 2020 00:28:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47320 * 2 1 4 4 N 1.46499 * 109.47744 * 120.00290 * 2 1 3 5 5 C 1.34774 * 120.00078 * 275.00523 * 4 2 1 6 6 O 1.21684 * 120.00079 * 359.97438 * 5 4 2 7 7 C 1.46380 * 119.99660 * 179.97438 * 5 4 2 8 8 H 1.07991 * 120.00423 * 353.93543 * 7 5 4 9 9 C 1.40055 * 119.99335 * 173.93587 * 7 5 4 10 10 N 1.30664 * 120.00024 * 6.15708 * 9 7 5 11 11 Si 1.86800 * 119.99652 * 186.14899 * 9 7 5 12 12 H 1.48501 * 109.46708 * 94.98615 * 11 9 7 13 13 H 1.48501 * 109.47213 * 214.98848 * 11 9 7 14 14 H 1.48502 * 109.47288 * 334.98959 * 11 9 7 15 15 C 1.53003 * 109.47153 * 240.00627 * 2 1 3 16 16 H 1.09001 * 109.47366 * 184.99996 * 15 2 1 17 17 O 1.42901 * 109.47141 * 304.99670 * 15 2 1 18 18 C 1.50696 * 109.47217 * 64.99705 * 15 2 1 19 19 C 1.38271 * 119.98839 * 280.23279 * 18 15 2 20 20 C 1.38221 * 120.05003 * 180.27448 * 19 18 15 21 21 C 1.38221 * 120.02830 * 359.77409 * 20 19 18 22 22 C 1.38442 * 119.97352 * 359.97209 * 21 20 19 23 23 F 1.35101 * 120.02430 * 180.02562 * 22 21 20 24 24 C 1.38176 * 119.98768 * 99.99977 * 18 15 2 25 25 H 1.09001 * 109.47209 * 59.99741 * 1 2 3 26 26 H 1.09006 * 109.47044 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.46974 * 299.98953 * 1 2 3 28 28 H 0.97009 * 119.99945 * 94.99768 * 4 2 1 29 29 H 0.97000 * 119.99852 * 179.97438 * 10 9 7 30 30 H 0.96704 * 113.99633 * 59.99969 * 17 15 2 31 31 H 1.07992 * 119.97352 * 0.02562 * 19 18 15 32 32 H 1.08002 * 119.98673 * 179.74231 * 20 19 18 33 33 H 1.08001 * 120.01222 * 179.97438 * 21 20 19 34 34 H 1.08002 * 120.01403 * 359.97438 * 24 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1471 -0.0184 2.3571 6 8 1.8580 1.1623 2.4118 7 6 2.6347 -0.7087 3.5523 8 1 2.7980 -1.7760 3.5306 9 6 2.8893 0.0151 4.7239 10 7 2.5791 1.2827 4.7892 11 14 3.6723 -0.8318 6.1933 12 1 5.1414 -0.6173 6.1633 13 1 3.1146 -0.2640 7.4471 14 1 3.3833 -2.2874 6.1377 15 6 2.0400 -0.7211 -1.2493 16 1 3.1263 -0.7994 -1.2057 17 8 1.4702 -2.0303 -1.3096 18 6 1.6413 0.0572 -2.4766 19 6 0.3563 -0.0500 -2.9757 20 6 -0.0092 0.6590 -4.1046 21 6 0.9084 1.4797 -4.7331 22 6 2.1937 1.5919 -4.2312 23 9 3.0912 2.3942 -4.8444 24 6 2.5585 0.8815 -3.0998 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8901 28 1 2.2492 -1.6319 1.1524 29 1 2.7551 1.7839 5.6009 30 1 0.5041 -2.0372 -1.3506 31 1 -0.3612 -0.6913 -2.4856 32 1 -1.0119 0.5712 -4.4960 33 1 0.6227 2.0332 -5.6154 34 1 3.5609 0.9684 -2.7073 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000275058308.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:28:20 Heat of formation + Delta-G solvation = -114.792767 kcal Electronic energy + Delta-G solvation = -19915.738416 eV Core-core repulsion = 16534.763549 eV Total energy + Delta-G solvation = -3380.974867 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -48.97733 -39.97537 -37.80515 -36.48051 -33.48891 -32.36075 -31.68615 -30.69842 -29.22350 -26.57631 -25.98443 -23.01377 -22.29747 -20.73330 -19.39424 -17.94390 -17.50306 -16.58941 -16.35930 -16.04556 -15.67599 -15.41203 -14.81910 -14.53792 -14.41119 -13.90835 -13.57055 -13.27469 -12.68907 -12.63141 -12.28386 -12.17817 -11.93166 -11.64796 -11.49555 -11.18317 -11.05647 -10.83372 -10.74805 -10.46877 -10.23280 -9.92343 -9.09286 -8.86119 -8.77132 -7.63276 -7.53387 -6.20123 -4.64028 0.99765 1.06422 3.14009 3.21375 3.24903 3.40707 4.03321 4.11771 4.40006 4.49176 4.58244 4.64086 4.82940 4.97467 5.07738 5.14079 5.28931 5.32661 5.65481 5.73902 5.76917 5.88607 5.96646 6.05483 6.09374 6.13665 6.36817 6.49755 6.73042 6.76871 7.43775 7.60848 7.94412 8.09144 8.33678 9.02499 9.53649 10.59025 10.77476 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.032807 B = 0.004170 C = 0.004003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.274067 B = 6713.737559 C = 6992.559757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.129 3.871 3 H 0.084 0.916 4 N -0.757 5.757 5 C 0.555 3.445 6 O -0.581 6.581 7 C -0.546 4.546 8 H 0.068 0.932 9 C 0.088 3.912 10 N -0.768 5.768 11 Si 0.907 3.093 12 H -0.273 1.273 13 H -0.279 1.279 14 H -0.265 1.265 15 C 0.138 3.862 16 H 0.114 0.886 17 O -0.550 6.550 18 C -0.074 4.074 19 C -0.121 4.121 20 C -0.090 4.090 21 C -0.158 4.158 22 C 0.099 3.901 23 F -0.141 7.141 24 C -0.142 4.142 25 H 0.056 0.944 26 H 0.050 0.950 27 H 0.069 0.931 28 H 0.385 0.615 29 H 0.268 0.732 30 H 0.372 0.628 31 H 0.130 0.870 32 H 0.133 0.867 33 H 0.133 0.867 34 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.918 -3.293 -16.143 16.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.022 3.978 3 H 0.102 0.898 4 N -0.413 5.413 5 C 0.359 3.641 6 O -0.464 6.464 7 C -0.583 4.583 8 H 0.086 0.914 9 C -0.131 4.131 10 N -0.397 5.397 11 Si 0.732 3.268 12 H -0.198 1.198 13 H -0.205 1.205 14 H -0.189 1.189 15 C 0.078 3.922 16 H 0.131 0.869 17 O -0.356 6.356 18 C -0.075 4.075 19 C -0.139 4.139 20 C -0.108 4.108 21 C -0.177 4.177 22 C 0.080 3.920 23 F -0.120 7.120 24 C -0.161 4.161 25 H 0.075 0.925 26 H 0.069 0.931 27 H 0.088 0.912 28 H 0.217 0.783 29 H 0.079 0.921 30 H 0.220 0.780 31 H 0.148 0.852 32 H 0.151 0.849 33 H 0.151 0.849 34 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -3.477 -2.381 -15.976 16.522 hybrid contribution 0.081 -0.390 0.537 0.668 sum -3.396 -2.771 -15.439 16.049 Atomic orbital electron populations 1.22354 0.96990 1.01060 1.02562 1.21004 0.93596 0.97876 0.85347 0.89805 1.46138 1.73037 1.13151 1.08945 1.18242 0.77681 0.86401 0.81735 1.90594 1.54557 1.16596 1.84657 1.20894 1.47247 0.95114 0.95009 0.91360 1.25698 0.93721 0.94521 0.99204 1.70024 1.35094 1.07862 1.26702 0.86371 0.79630 0.80237 0.80596 1.19812 1.20486 1.18863 1.21252 0.99051 0.81867 0.89993 0.86862 1.86611 1.25427 1.26954 1.96613 1.20415 0.93669 0.96613 0.96804 1.21035 0.95757 1.00464 0.96616 1.20959 0.99307 0.95539 0.95010 1.21130 0.92292 1.02099 1.02167 1.17669 0.87557 0.93147 0.93664 1.91499 1.67063 1.71273 1.82117 1.21029 1.01406 0.98260 0.95384 0.92539 0.93113 0.91185 0.78282 0.92145 0.77961 0.85198 0.84928 0.84888 0.84414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.75 8.22 37.16 0.31 -2.45 16 2 C 0.13 2.33 2.44 -67.93 -0.17 2.16 16 3 H 0.08 1.76 7.58 -51.93 -0.39 1.37 16 4 N -0.76 -16.48 5.06 -55.22 -0.28 -16.76 16 5 C 0.56 15.53 7.71 -12.99 -0.10 15.43 16 6 O -0.58 -18.47 14.71 5.20 0.08 -18.39 16 7 C -0.55 -15.34 9.54 -35.63 -0.34 -15.68 16 8 H 0.07 1.77 7.85 -52.49 -0.41 1.36 16 9 C 0.09 2.46 5.49 -17.37 -0.10 2.36 16 10 N -0.77 -22.96 11.85 55.55 0.66 -22.30 16 11 Si 0.91 20.12 29.56 -169.99 -5.03 15.09 16 12 H -0.27 -5.94 7.11 56.52 0.40 -5.53 16 13 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 14 H -0.26 -5.68 7.11 56.52 0.40 -5.27 16 15 C 0.14 1.96 3.18 -27.88 -0.09 1.88 16 16 H 0.11 1.65 8.00 -51.93 -0.42 1.23 16 17 O -0.55 -7.36 12.82 -35.23 -0.45 -7.81 16 18 C -0.07 -0.94 4.82 -104.63 -0.50 -1.44 16 19 C -0.12 -1.28 7.29 -39.58 -0.29 -1.57 16 20 C -0.09 -0.85 10.04 -39.59 -0.40 -1.25 16 21 C -0.16 -1.64 10.03 -39.51 -0.40 -2.03 16 22 C 0.10 1.22 7.30 -39.42 -0.29 0.93 16 23 F -0.14 -1.83 17.27 2.25 0.04 -1.79 16 24 C -0.14 -1.82 9.65 -39.51 -0.38 -2.20 16 25 H 0.06 0.76 5.56 -51.93 -0.29 0.47 16 26 H 0.05 0.70 6.72 -51.93 -0.35 0.35 16 27 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 28 H 0.38 7.67 8.36 -40.82 -0.34 7.33 16 29 H 0.27 7.27 8.29 -40.82 -0.34 6.93 16 30 H 0.37 3.91 5.67 45.56 0.26 4.17 16 31 H 0.13 1.13 5.85 -52.49 -0.31 0.82 16 32 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 33 H 0.13 1.09 8.06 -52.49 -0.42 0.66 16 34 H 0.14 1.67 8.04 -52.49 -0.42 1.24 16 LS Contribution 294.47 15.07 4.44 4.44 Total: -1.00 -34.13 294.47 -6.36 -40.49 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: -3.07 Total: 10.88 kcal Atomic # 6 Polarization: -1.12 SS G_CDS: -2.74 Total: -3.86 kcal Atomic # 7 Polarization: -39.44 SS G_CDS: 0.38 Total: -39.06 kcal Atomic # 8 Polarization: -25.82 SS G_CDS: -0.38 Total: -26.20 kcal Atomic # 9 Polarization: -1.83 SS G_CDS: 0.04 Total: -1.79 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.03 Total: 15.09 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -34.13 -6.36 -40.49 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275058308.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.304 kcal (2) G-P(sol) polarization free energy of solvation -34.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds