Wall clock time and date at job start Mon Mar 30 2020 00:28:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47320 * 2 1 4 4 N 1.46499 * 109.47744 * 120.00290 * 2 1 3 5 5 C 1.34774 * 120.00078 * 275.00523 * 4 2 1 6 6 O 1.21684 * 120.00079 * 359.97438 * 5 4 2 7 7 C 1.46380 * 119.99660 * 179.97438 * 5 4 2 8 8 H 1.07991 * 120.00423 * 353.93543 * 7 5 4 9 9 C 1.40055 * 119.99335 * 173.93587 * 7 5 4 10 10 N 1.30664 * 120.00024 * 6.15708 * 9 7 5 11 11 Si 1.86800 * 119.99652 * 186.14899 * 9 7 5 12 12 H 1.48501 * 109.46708 * 94.98615 * 11 9 7 13 13 H 1.48501 * 109.47213 * 214.98848 * 11 9 7 14 14 H 1.48502 * 109.47288 * 334.98959 * 11 9 7 15 15 C 1.53003 * 109.47153 * 240.00627 * 2 1 3 16 16 H 1.09001 * 109.47366 * 184.99996 * 15 2 1 17 17 O 1.42901 * 109.47141 * 304.99670 * 15 2 1 18 18 C 1.50696 * 109.47217 * 64.99705 * 15 2 1 19 19 C 1.38271 * 119.98839 * 280.23279 * 18 15 2 20 20 C 1.38221 * 120.05003 * 180.27448 * 19 18 15 21 21 C 1.38221 * 120.02830 * 359.77409 * 20 19 18 22 22 C 1.38442 * 119.97352 * 359.97209 * 21 20 19 23 23 F 1.35101 * 120.02430 * 180.02562 * 22 21 20 24 24 C 1.38176 * 119.98768 * 99.99977 * 18 15 2 25 25 H 1.09001 * 109.47209 * 59.99741 * 1 2 3 26 26 H 1.09006 * 109.47044 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.46974 * 299.98953 * 1 2 3 28 28 H 0.97009 * 119.99945 * 94.99768 * 4 2 1 29 29 H 0.97000 * 119.99852 * 179.97438 * 10 9 7 30 30 H 0.96704 * 113.99633 * 59.99969 * 17 15 2 31 31 H 1.07992 * 119.97352 * 0.02562 * 19 18 15 32 32 H 1.08002 * 119.98673 * 179.74231 * 20 19 18 33 33 H 1.08001 * 120.01222 * 179.97438 * 21 20 19 34 34 H 1.08002 * 120.01403 * 359.97438 * 24 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1471 -0.0184 2.3571 6 8 1.8580 1.1623 2.4118 7 6 2.6347 -0.7087 3.5523 8 1 2.7980 -1.7760 3.5306 9 6 2.8893 0.0151 4.7239 10 7 2.5791 1.2827 4.7892 11 14 3.6723 -0.8318 6.1933 12 1 5.1414 -0.6173 6.1633 13 1 3.1146 -0.2640 7.4471 14 1 3.3833 -2.2874 6.1377 15 6 2.0400 -0.7211 -1.2493 16 1 3.1263 -0.7994 -1.2057 17 8 1.4702 -2.0303 -1.3096 18 6 1.6413 0.0572 -2.4766 19 6 0.3563 -0.0500 -2.9757 20 6 -0.0092 0.6590 -4.1046 21 6 0.9084 1.4797 -4.7331 22 6 2.1937 1.5919 -4.2312 23 9 3.0912 2.3942 -4.8444 24 6 2.5585 0.8815 -3.0998 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8901 28 1 2.2492 -1.6319 1.1524 29 1 2.7551 1.7839 5.6009 30 1 0.5041 -2.0372 -1.3506 31 1 -0.3612 -0.6913 -2.4856 32 1 -1.0119 0.5712 -4.4960 33 1 0.6227 2.0332 -5.6154 34 1 3.5609 0.9684 -2.7073 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000275058308.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:28:19 Heat of formation + Delta-G solvation = -140.569380 kcal Electronic energy + Delta-G solvation = -19916.856174 eV Core-core repulsion = 16534.763549 eV Total energy + Delta-G solvation = -3382.092625 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.93706 -41.06563 -39.39437 -37.95865 -35.19345 -34.41417 -32.80671 -31.73021 -30.66410 -28.21969 -27.54634 -24.01975 -23.44775 -22.11201 -21.17749 -19.37992 -18.94928 -17.72132 -17.47321 -17.26362 -17.10513 -16.63942 -16.27657 -15.98855 -15.81357 -15.13773 -14.84767 -14.55739 -14.41185 -14.03531 -13.61062 -13.44165 -13.15143 -13.00978 -12.82401 -12.68427 -12.58388 -12.53848 -12.33033 -12.00769 -11.90007 -11.14673 -10.93357 -10.03245 -9.82977 -9.70696 -9.41890 -8.29583 -6.84382 0.10625 0.19407 1.40298 1.41199 1.57162 2.24411 2.47874 2.51460 2.97476 3.20364 3.48928 3.61987 3.68520 3.78144 3.82277 4.08078 4.13042 4.19673 4.35627 4.41077 4.64621 4.77073 4.85666 5.00231 5.04487 5.12647 5.30874 5.31629 5.33186 5.47497 5.88494 5.89890 6.25002 6.29762 6.67772 6.87789 7.56968 8.50480 8.68104 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.032807 B = 0.004170 C = 0.004003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.274067 B = 6713.737559 C = 6992.559757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.126 3.874 3 H 0.046 0.954 4 N -0.746 5.746 5 C 0.540 3.460 6 O -0.631 6.631 7 C -0.576 4.576 8 H 0.086 0.914 9 C 0.030 3.970 10 N -0.822 5.822 11 Si 0.996 3.004 12 H -0.264 1.264 13 H -0.272 1.272 14 H -0.248 1.248 15 C 0.159 3.841 16 H 0.104 0.896 17 O -0.551 6.551 18 C -0.090 4.090 19 C -0.121 4.121 20 C -0.081 4.081 21 C -0.152 4.152 22 C 0.077 3.923 23 F -0.150 7.150 24 C -0.160 4.160 25 H 0.087 0.913 26 H 0.079 0.921 27 H 0.025 0.975 28 H 0.396 0.604 29 H 0.274 0.726 30 H 0.386 0.614 31 H 0.155 0.845 32 H 0.171 0.829 33 H 0.158 0.842 34 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.964 -5.181 -17.083 18.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.019 3.981 3 H 0.064 0.936 4 N -0.400 5.400 5 C 0.344 3.656 6 O -0.518 6.518 7 C -0.612 4.612 8 H 0.104 0.896 9 C -0.185 4.185 10 N -0.452 5.452 11 Si 0.816 3.184 12 H -0.189 1.189 13 H -0.197 1.197 14 H -0.171 1.171 15 C 0.099 3.901 16 H 0.122 0.878 17 O -0.359 6.359 18 C -0.091 4.091 19 C -0.139 4.139 20 C -0.099 4.099 21 C -0.171 4.171 22 C 0.058 3.942 23 F -0.129 7.129 24 C -0.179 4.179 25 H 0.106 0.894 26 H 0.098 0.902 27 H 0.045 0.955 28 H 0.230 0.770 29 H 0.084 0.916 30 H 0.237 0.763 31 H 0.172 0.828 32 H 0.189 0.811 33 H 0.175 0.825 34 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -4.538 -4.315 -16.971 18.090 hybrid contribution 0.352 0.203 0.703 0.812 sum -4.187 -4.112 -16.268 17.294 Atomic orbital electron populations 1.22248 0.95047 1.02725 1.01906 1.21173 0.95124 0.96115 0.85651 0.93610 1.45792 1.72004 1.13430 1.08750 1.18565 0.77394 0.86039 0.83560 1.90550 1.56667 1.18674 1.85903 1.21441 1.47716 0.96187 0.95867 0.89626 1.26942 0.93633 0.95085 1.02818 1.70187 1.36632 1.10149 1.28193 0.85029 0.78436 0.79421 0.75535 1.18915 1.19732 1.17147 1.20810 0.98487 0.82045 0.88807 0.87841 1.86603 1.26860 1.25974 1.96473 1.20249 0.94936 0.97296 0.96580 1.21377 0.95018 1.00496 0.96969 1.21400 1.00659 0.93901 0.93950 1.21509 0.91253 1.01723 1.02597 1.17912 0.88536 0.93711 0.94001 1.91471 1.67597 1.71592 1.82231 1.21098 1.01556 0.99070 0.96189 0.89415 0.90218 0.95544 0.77015 0.91627 0.76254 0.82762 0.81113 0.82466 0.85193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.07 8.22 71.98 0.59 -4.48 16 2 C 0.13 4.62 2.44 44.99 0.11 4.73 16 3 H 0.05 2.05 7.58 -2.39 -0.02 2.03 16 4 N -0.75 -33.14 5.06 -446.83 -2.26 -35.39 16 5 C 0.54 31.33 7.71 86.36 0.67 32.00 16 6 O -0.63 -42.21 14.71 -4.30 -0.06 -42.27 16 7 C -0.58 -32.85 9.54 24.83 0.24 -32.61 16 8 H 0.09 4.41 7.85 -2.92 -0.02 4.39 16 9 C 0.03 1.70 5.49 85.31 0.47 2.17 16 10 N -0.82 -50.67 11.85 21.84 0.26 -50.42 16 11 Si 1.00 41.27 29.56 68.60 2.03 43.29 16 12 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 13 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 14 H -0.25 -9.53 7.11 99.48 0.71 -8.83 16 15 C 0.16 4.43 3.18 29.85 0.09 4.53 16 16 H 0.10 3.08 8.00 -2.39 -0.02 3.06 16 17 O -0.55 -13.51 12.82 -148.98 -1.91 -15.42 16 18 C -0.09 -2.17 4.82 -19.87 -0.10 -2.27 16 19 C -0.12 -2.18 7.29 22.27 0.16 -2.02 16 20 C -0.08 -1.22 10.04 22.26 0.22 -0.99 16 21 C -0.15 -2.73 10.03 22.31 0.22 -2.51 16 22 C 0.08 1.86 7.30 22.38 0.16 2.02 16 23 F -0.15 -3.90 17.27 44.97 0.78 -3.12 16 24 C -0.16 -4.14 9.65 22.31 0.22 -3.93 16 25 H 0.09 2.18 5.56 -2.39 -0.01 2.17 16 26 H 0.08 2.01 6.72 -2.38 -0.02 2.00 16 27 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.40 15.73 8.36 -92.70 -0.78 14.96 16 29 H 0.27 15.29 8.29 -92.71 -0.77 14.52 16 30 H 0.39 6.77 5.67 -74.05 -0.42 6.35 16 31 H 0.15 1.98 5.85 -2.91 -0.02 1.96 16 32 H 0.17 1.29 8.06 -2.91 -0.02 1.26 16 33 H 0.16 2.02 8.06 -2.91 -0.02 1.99 16 34 H 0.13 3.38 8.04 -2.91 -0.02 3.36 16 Total: -1.00 -78.27 294.47 1.85 -76.42 By element: Atomic # 1 Polarization: 30.31 SS G_CDS: -0.04 Total: 30.27 kcal Atomic # 6 Polarization: -6.42 SS G_CDS: 3.06 Total: -3.36 kcal Atomic # 7 Polarization: -83.81 SS G_CDS: -2.00 Total: -85.81 kcal Atomic # 8 Polarization: -55.72 SS G_CDS: -1.97 Total: -57.69 kcal Atomic # 9 Polarization: -3.90 SS G_CDS: 0.78 Total: -3.12 kcal Atomic # 14 Polarization: 41.27 SS G_CDS: 2.03 Total: 43.29 kcal Total: -78.27 1.85 -76.42 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275058308.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.153 kcal (2) G-P(sol) polarization free energy of solvation -78.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds