Wall clock time and date at job start Mon Mar 30 2020 00:28:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 109.47242 * 2 1 4 4 N 1.46501 * 109.47229 * 239.99672 * 2 1 3 5 5 C 1.34777 * 119.99691 * 84.99836 * 4 2 1 6 6 O 1.21682 * 120.00231 * 0.02562 * 5 4 2 7 7 C 1.46381 * 119.99639 * 180.02562 * 5 4 2 8 8 H 1.07996 * 119.99816 * 359.97438 * 7 5 4 9 9 C 1.40051 * 119.99623 * 180.02562 * 7 5 4 10 10 N 1.30671 * 119.99991 * 359.97438 * 9 7 5 11 11 Si 1.86795 * 119.99747 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47261 * 89.99707 * 11 9 7 13 13 H 1.48504 * 109.47037 * 209.99580 * 11 9 7 14 14 H 1.48506 * 109.47110 * 329.99533 * 11 9 7 15 15 C 1.52999 * 109.47312 * 119.99789 * 2 1 3 16 16 H 1.09000 * 109.47118 * 300.00607 * 15 2 1 17 17 O 1.42905 * 109.47166 * 59.99940 * 15 2 1 18 18 C 1.50691 * 109.47489 * 179.97438 * 15 2 1 19 19 C 1.38275 * 119.98701 * 99.99923 * 18 15 2 20 20 C 1.38217 * 120.05337 * 179.74861 * 19 18 15 21 21 C 1.38225 * 120.02811 * 359.95316 * 20 19 18 22 22 C 1.38443 * 119.96927 * 0.02781 * 21 20 19 23 23 F 1.35099 * 120.02154 * 179.97438 * 22 21 20 24 24 C 1.38176 * 119.98997 * 279.72858 * 18 15 2 25 25 H 1.09000 * 109.47524 * 299.99853 * 1 2 3 26 26 H 1.09000 * 109.47545 * 60.00276 * 1 2 3 27 27 H 1.09000 * 109.47127 * 180.02562 * 1 2 3 28 28 H 0.97003 * 120.00252 * 265.00371 * 4 2 1 29 29 H 0.97004 * 119.99578 * 180.02562 * 10 9 7 30 30 H 0.96701 * 113.99802 * 60.00033 * 17 15 2 31 31 H 1.07997 * 119.96974 * 359.72750 * 19 18 15 32 32 H 1.08000 * 119.99040 * 179.97438 * 20 19 18 33 33 H 1.07996 * 120.01808 * 180.02562 * 21 20 19 34 34 H 1.08002 * 120.01117 * 0.25004 * 24 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1470 -0.0183 -2.3571 6 8 1.8580 1.1624 -2.4117 7 6 2.6344 -0.7086 -3.5524 8 1 2.8913 -1.7564 -3.5038 9 6 2.7687 -0.0098 -4.7587 10 7 2.4583 1.2582 -4.8172 11 14 3.3900 -0.8908 -6.2842 12 1 2.2392 -1.4609 -7.0298 13 1 4.1136 0.0728 -7.1520 14 1 4.3111 -1.9846 -5.8835 15 6 2.0400 -0.7212 1.2492 16 1 1.6766 -0.2074 2.1392 17 8 1.5637 -2.0685 1.2493 18 6 3.5469 -0.7218 1.2490 19 6 4.2385 0.1956 2.0185 20 6 5.6207 0.1929 2.0233 21 6 6.3133 -0.7276 1.2594 22 6 5.6219 -1.6468 0.4889 23 9 6.2978 -2.5467 -0.2585 24 6 4.2371 -1.6426 0.4841 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 2.2490 -1.6319 -1.1526 29 1 2.5509 1.7420 -5.6529 30 1 1.8490 -2.5866 0.4843 31 1 3.6982 0.9149 2.6160 32 1 6.1598 0.9101 2.6244 33 1 7.3932 -0.7298 1.2636 34 1 3.6967 -2.3592 -0.1166 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000275058311.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:28:23 Heat of formation + Delta-G solvation = -114.170944 kcal Electronic energy + Delta-G solvation = -20537.247222 eV Core-core repulsion = 17156.299319 eV Total energy + Delta-G solvation = -3380.947903 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -48.71423 -39.80276 -37.73377 -36.40874 -33.48572 -32.34932 -31.24245 -30.62814 -29.66733 -26.14491 -25.96435 -22.69750 -22.08554 -21.04703 -19.35658 -18.03170 -17.46731 -16.47573 -16.07185 -15.83615 -15.42815 -15.40756 -14.86182 -14.58188 -13.89036 -13.62943 -13.48970 -13.22801 -12.80452 -12.43105 -12.28459 -12.01701 -11.65702 -11.59862 -11.49816 -11.32340 -11.02634 -10.95572 -10.53291 -10.48632 -10.21950 -9.86506 -8.87488 -8.84060 -8.56800 -7.66488 -7.58099 -6.21002 -4.66575 1.23581 1.30807 3.12965 3.20163 3.23495 3.63075 4.07912 4.31621 4.45271 4.55800 4.62176 4.77925 4.79228 5.05636 5.15919 5.30146 5.41285 5.61499 5.69893 5.82791 5.95527 6.07094 6.12912 6.19354 6.25007 6.33333 6.48905 6.60951 6.82686 6.96940 7.41028 7.58484 7.83922 8.03352 8.27629 9.00537 9.45090 10.57019 10.75404 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.016199 B = 0.007218 C = 0.005770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.139518 B = 3878.326197 C = 4851.491317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.125 3.875 3 H 0.085 0.915 4 N -0.760 5.760 5 C 0.559 3.441 6 O -0.577 6.577 7 C -0.545 4.545 8 H 0.066 0.934 9 C 0.088 3.912 10 N -0.767 5.767 11 Si 0.905 3.095 12 H -0.272 1.272 13 H -0.279 1.279 14 H -0.265 1.265 15 C 0.139 3.861 16 H 0.115 0.885 17 O -0.552 6.552 18 C -0.075 4.075 19 C -0.123 4.123 20 C -0.092 4.092 21 C -0.159 4.159 22 C 0.104 3.896 23 F -0.140 7.140 24 C -0.130 4.130 25 H 0.048 0.952 26 H 0.063 0.937 27 H 0.055 0.945 28 H 0.371 0.629 29 H 0.268 0.732 30 H 0.373 0.627 31 H 0.128 0.872 32 H 0.131 0.869 33 H 0.132 0.868 34 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.915 -4.736 12.454 13.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.018 3.982 3 H 0.103 0.897 4 N -0.417 5.417 5 C 0.363 3.637 6 O -0.460 6.460 7 C -0.582 4.582 8 H 0.084 0.916 9 C -0.131 4.131 10 N -0.396 5.396 11 Si 0.730 3.270 12 H -0.197 1.197 13 H -0.205 1.205 14 H -0.189 1.189 15 C 0.080 3.920 16 H 0.133 0.867 17 O -0.358 6.358 18 C -0.076 4.076 19 C -0.141 4.141 20 C -0.110 4.110 21 C -0.178 4.178 22 C 0.085 3.915 23 F -0.118 7.118 24 C -0.149 4.149 25 H 0.067 0.933 26 H 0.082 0.918 27 H 0.074 0.926 28 H 0.204 0.796 29 H 0.079 0.921 30 H 0.221 0.779 31 H 0.146 0.854 32 H 0.148 0.852 33 H 0.150 0.850 34 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 3.437 -3.517 12.824 13.735 hybrid contribution 0.908 -1.134 -1.531 2.111 sum 4.344 -4.651 11.293 12.963 Atomic orbital electron populations 1.22074 0.95837 1.01724 1.01524 1.21151 0.93937 0.97983 0.85095 0.89673 1.46233 1.73437 1.12294 1.09724 1.18159 0.77706 0.86364 0.81455 1.90598 1.54727 1.16357 1.84280 1.20859 1.46895 0.97073 0.93362 0.91593 1.25682 0.93307 0.94454 0.99690 1.70015 1.35181 1.08145 1.26217 0.86409 0.79384 0.79859 0.81362 1.19716 1.20454 1.18882 1.21293 0.87439 0.83780 0.99503 0.86744 1.86571 1.76663 1.23086 1.49449 1.20358 0.96899 0.94944 0.95365 1.21001 0.94282 0.98963 0.99861 1.20917 0.94073 0.97697 0.98272 1.21100 1.00657 0.96803 0.99227 1.17624 0.90076 0.90182 0.93659 1.91501 1.80209 1.65597 1.74517 1.20810 0.92331 1.01206 1.00511 0.93259 0.91767 0.92604 0.79641 0.92125 0.77891 0.85358 0.85155 0.85036 0.85122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.63 9.34 37.16 0.35 -2.28 16 2 C 0.13 2.25 2.40 -67.93 -0.16 2.09 16 3 H 0.09 1.75 7.58 -51.93 -0.39 1.36 16 4 N -0.76 -15.89 4.18 -55.22 -0.23 -16.12 16 5 C 0.56 15.35 7.71 -12.98 -0.10 15.25 16 6 O -0.58 -18.17 14.68 5.20 0.08 -18.09 16 7 C -0.54 -15.16 9.54 -35.63 -0.34 -15.50 16 8 H 0.07 1.69 7.85 -52.49 -0.41 1.28 16 9 C 0.09 2.46 5.50 -17.37 -0.10 2.36 16 10 N -0.77 -22.87 11.83 55.55 0.66 -22.21 16 11 Si 0.91 20.22 29.56 -169.99 -5.02 15.20 16 12 H -0.27 -5.93 7.11 56.52 0.40 -5.52 16 13 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 14 H -0.26 -5.76 7.11 56.52 0.40 -5.36 16 15 C 0.14 1.98 3.09 -27.89 -0.09 1.89 16 16 H 0.11 1.39 8.01 -51.93 -0.42 0.98 16 17 O -0.55 -7.65 12.51 -35.23 -0.44 -8.09 16 18 C -0.08 -1.09 4.88 -104.64 -0.51 -1.60 16 19 C -0.12 -1.58 9.67 -39.58 -0.38 -1.96 16 20 C -0.09 -1.10 10.04 -39.59 -0.40 -1.50 16 21 C -0.16 -2.10 10.03 -39.51 -0.40 -2.50 16 22 C 0.10 1.59 7.30 -39.42 -0.29 1.31 16 23 F -0.14 -2.25 17.27 2.25 0.04 -2.21 16 24 C -0.13 -1.98 8.30 -39.51 -0.33 -2.31 16 25 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 27 H 0.05 0.91 7.68 -51.93 -0.40 0.51 16 28 H 0.37 6.79 5.44 -40.82 -0.22 6.56 16 29 H 0.27 7.28 8.29 -40.82 -0.34 6.94 16 30 H 0.37 4.57 6.12 45.56 0.28 4.85 16 31 H 0.13 1.33 8.04 -52.49 -0.42 0.90 16 32 H 0.13 1.17 8.06 -52.49 -0.42 0.74 16 33 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 34 H 0.13 1.87 5.49 -52.49 -0.29 1.58 16 LS Contribution 296.04 15.07 4.46 4.46 Total: -1.00 -34.21 296.04 -6.30 -40.51 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: -3.10 Total: 11.28 kcal Atomic # 6 Polarization: -2.00 SS G_CDS: -2.74 Total: -4.74 kcal Atomic # 7 Polarization: -38.76 SS G_CDS: 0.43 Total: -38.33 kcal Atomic # 8 Polarization: -25.81 SS G_CDS: -0.36 Total: -26.18 kcal Atomic # 9 Polarization: -2.25 SS G_CDS: 0.04 Total: -2.21 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -34.21 -6.30 -40.51 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275058311.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.662 kcal (2) G-P(sol) polarization free energy of solvation -34.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds