Wall clock time and date at job start Mon Mar 30 2020 00:28:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 109.47242 * 2 1 4 4 N 1.46501 * 109.47229 * 239.99672 * 2 1 3 5 5 C 1.34777 * 119.99691 * 84.99836 * 4 2 1 6 6 O 1.21682 * 120.00231 * 0.02562 * 5 4 2 7 7 C 1.46381 * 119.99639 * 180.02562 * 5 4 2 8 8 H 1.07996 * 119.99816 * 359.97438 * 7 5 4 9 9 C 1.40051 * 119.99623 * 180.02562 * 7 5 4 10 10 N 1.30671 * 119.99991 * 359.97438 * 9 7 5 11 11 Si 1.86795 * 119.99747 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47261 * 89.99707 * 11 9 7 13 13 H 1.48504 * 109.47037 * 209.99580 * 11 9 7 14 14 H 1.48506 * 109.47110 * 329.99533 * 11 9 7 15 15 C 1.52999 * 109.47312 * 119.99789 * 2 1 3 16 16 H 1.09000 * 109.47118 * 300.00607 * 15 2 1 17 17 O 1.42905 * 109.47166 * 59.99940 * 15 2 1 18 18 C 1.50691 * 109.47489 * 179.97438 * 15 2 1 19 19 C 1.38275 * 119.98701 * 99.99923 * 18 15 2 20 20 C 1.38217 * 120.05337 * 179.74861 * 19 18 15 21 21 C 1.38225 * 120.02811 * 359.95316 * 20 19 18 22 22 C 1.38443 * 119.96927 * 0.02781 * 21 20 19 23 23 F 1.35099 * 120.02154 * 179.97438 * 22 21 20 24 24 C 1.38176 * 119.98997 * 279.72858 * 18 15 2 25 25 H 1.09000 * 109.47524 * 299.99853 * 1 2 3 26 26 H 1.09000 * 109.47545 * 60.00276 * 1 2 3 27 27 H 1.09000 * 109.47127 * 180.02562 * 1 2 3 28 28 H 0.97003 * 120.00252 * 265.00371 * 4 2 1 29 29 H 0.97004 * 119.99578 * 180.02562 * 10 9 7 30 30 H 0.96701 * 113.99802 * 60.00033 * 17 15 2 31 31 H 1.07997 * 119.96974 * 359.72750 * 19 18 15 32 32 H 1.08000 * 119.99040 * 179.97438 * 20 19 18 33 33 H 1.07996 * 120.01808 * 180.02562 * 21 20 19 34 34 H 1.08002 * 120.01117 * 0.25004 * 24 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1470 -0.0183 -2.3571 6 8 1.8580 1.1624 -2.4117 7 6 2.6344 -0.7086 -3.5524 8 1 2.8913 -1.7564 -3.5038 9 6 2.7687 -0.0098 -4.7587 10 7 2.4583 1.2582 -4.8172 11 14 3.3900 -0.8908 -6.2842 12 1 2.2392 -1.4609 -7.0298 13 1 4.1136 0.0728 -7.1520 14 1 4.3111 -1.9846 -5.8835 15 6 2.0400 -0.7212 1.2492 16 1 1.6766 -0.2074 2.1392 17 8 1.5637 -2.0685 1.2493 18 6 3.5469 -0.7218 1.2490 19 6 4.2385 0.1956 2.0185 20 6 5.6207 0.1929 2.0233 21 6 6.3133 -0.7276 1.2594 22 6 5.6219 -1.6468 0.4889 23 9 6.2978 -2.5467 -0.2585 24 6 4.2371 -1.6426 0.4841 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 2.2490 -1.6319 -1.1526 29 1 2.5509 1.7420 -5.6529 30 1 1.8490 -2.5866 0.4843 31 1 3.6982 0.9149 2.6160 32 1 6.1598 0.9101 2.6244 33 1 7.3932 -0.7298 1.2636 34 1 3.6967 -2.3592 -0.1166 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000275058311.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:28:23 Heat of formation + Delta-G solvation = -139.061513 kcal Electronic energy + Delta-G solvation = -20538.326558 eV Core-core repulsion = 17156.299319 eV Total energy + Delta-G solvation = -3382.027239 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.89378 -41.02563 -39.29809 -37.93324 -35.16907 -34.40249 -32.44973 -31.81947 -31.14119 -28.19512 -27.17420 -23.87574 -23.37898 -22.46263 -21.09343 -19.61797 -18.85076 -17.69417 -17.61022 -17.11919 -17.01321 -16.58725 -16.30631 -16.08198 -15.29061 -15.00153 -14.91152 -14.77732 -14.24874 -13.92081 -13.70607 -13.38583 -13.17872 -13.01528 -12.80911 -12.75874 -12.64124 -12.54318 -12.34063 -12.06413 -11.84678 -11.09510 -10.94101 -9.91869 -9.84487 -9.68612 -9.42374 -8.29665 -6.85056 0.16815 0.25540 1.37366 1.38415 1.52952 2.22053 2.48096 2.56985 2.98892 3.22781 3.46297 3.56386 3.65025 3.77495 3.89555 4.11035 4.24112 4.35932 4.42244 4.54030 4.63887 4.81075 4.89016 5.06597 5.09723 5.15664 5.30866 5.33509 5.36364 5.47211 5.86580 5.93592 6.19280 6.26217 6.55722 6.87199 7.51316 8.50140 8.68008 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.016199 B = 0.007218 C = 0.005770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.139518 B = 3878.326197 C = 4851.491317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.123 3.877 3 H 0.057 0.943 4 N -0.745 5.745 5 C 0.547 3.453 6 O -0.627 6.627 7 C -0.574 4.574 8 H 0.082 0.918 9 C 0.031 3.969 10 N -0.819 5.819 11 Si 0.990 3.010 12 H -0.260 1.260 13 H -0.273 1.273 14 H -0.253 1.253 15 C 0.157 3.843 16 H 0.144 0.856 17 O -0.552 6.552 18 C -0.094 4.094 19 C -0.125 4.125 20 C -0.089 4.089 21 C -0.161 4.161 22 C 0.073 3.927 23 F -0.151 7.151 24 C -0.148 4.148 25 H 0.082 0.918 26 H 0.022 0.978 27 H 0.065 0.935 28 H 0.385 0.615 29 H 0.273 0.727 30 H 0.378 0.622 31 H 0.157 0.843 32 H 0.167 0.833 33 H 0.152 0.848 34 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.622 -5.565 13.588 15.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.017 3.983 3 H 0.075 0.925 4 N -0.400 5.400 5 C 0.351 3.649 6 O -0.513 6.513 7 C -0.611 4.611 8 H 0.100 0.900 9 C -0.184 4.184 10 N -0.449 5.449 11 Si 0.809 3.191 12 H -0.185 1.185 13 H -0.198 1.198 14 H -0.176 1.176 15 C 0.097 3.903 16 H 0.162 0.838 17 O -0.358 6.358 18 C -0.094 4.094 19 C -0.143 4.143 20 C -0.106 4.106 21 C -0.180 4.180 22 C 0.054 3.946 23 F -0.130 7.130 24 C -0.167 4.167 25 H 0.101 0.899 26 H 0.042 0.958 27 H 0.084 0.916 28 H 0.220 0.780 29 H 0.083 0.917 30 H 0.228 0.772 31 H 0.175 0.825 32 H 0.185 0.815 33 H 0.170 0.830 34 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 4.139 -4.400 14.007 15.254 hybrid contribution 0.687 -0.861 -1.771 2.086 sum 4.826 -5.261 12.235 14.166 Atomic orbital electron populations 1.21989 0.95071 1.02227 1.01131 1.21319 0.94510 0.96885 0.85604 0.92452 1.45807 1.72196 1.12784 1.09252 1.18400 0.77312 0.85946 0.83218 1.90553 1.56771 1.18440 1.85569 1.21399 1.47328 0.98047 0.94307 0.89994 1.26864 0.92877 0.95119 1.03520 1.70175 1.36763 1.10342 1.27610 0.85137 0.79084 0.78587 0.76258 1.18503 1.19817 1.17614 1.21182 0.87415 0.83607 0.98084 0.83819 1.86565 1.76666 1.22821 1.49769 1.20498 0.97020 0.95671 0.96252 1.21444 0.95021 0.98542 0.99269 1.21377 0.94012 0.97543 0.97698 1.21466 1.01925 0.96137 0.98425 1.17974 0.90466 0.91225 0.94931 1.91462 1.80377 1.66149 1.75012 1.20949 0.92685 1.01909 1.01193 0.89939 0.95848 0.91553 0.78018 0.91687 0.77238 0.82549 0.81546 0.82994 0.85284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.92 9.34 71.98 0.67 -4.25 16 2 C 0.12 4.38 2.40 44.99 0.11 4.49 16 3 H 0.06 2.40 7.58 -2.39 -0.02 2.38 16 4 N -0.74 -31.53 4.18 -446.83 -1.87 -33.40 16 5 C 0.55 30.96 7.71 86.36 0.67 31.63 16 6 O -0.63 -41.13 14.68 -4.29 -0.06 -41.19 16 7 C -0.57 -32.44 9.54 24.83 0.24 -32.20 16 8 H 0.08 4.19 7.85 -2.91 -0.02 4.17 16 9 C 0.03 1.76 5.50 85.31 0.47 2.23 16 10 N -0.82 -50.25 11.83 21.84 0.26 -49.99 16 11 Si 0.99 41.60 29.56 68.60 2.03 43.63 16 12 H -0.26 -10.40 7.11 99.48 0.71 -9.70 16 13 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 14 H -0.25 -10.02 7.11 99.48 0.71 -9.32 16 15 C 0.16 4.13 3.09 29.85 0.09 4.22 16 16 H 0.14 2.99 8.01 -2.39 -0.02 2.97 16 17 O -0.55 -14.16 12.51 -148.98 -1.86 -16.02 16 18 C -0.09 -2.58 4.88 -19.87 -0.10 -2.67 16 19 C -0.12 -2.87 9.67 22.27 0.22 -2.66 16 20 C -0.09 -1.87 10.04 22.26 0.22 -1.65 16 21 C -0.16 -3.97 10.03 22.32 0.22 -3.75 16 22 C 0.07 2.21 7.30 22.38 0.16 2.38 16 23 F -0.15 -4.89 17.27 44.97 0.78 -4.12 16 24 C -0.15 -4.46 8.30 22.31 0.19 -4.28 16 25 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 26 H 0.02 0.95 8.14 -2.39 -0.02 0.94 16 27 H 0.07 2.08 7.68 -2.39 -0.02 2.06 16 28 H 0.39 14.12 5.44 -92.71 -0.50 13.61 16 29 H 0.27 15.24 8.29 -92.71 -0.77 14.47 16 30 H 0.38 8.78 6.12 -74.06 -0.45 8.33 16 31 H 0.16 2.64 8.04 -2.91 -0.02 2.61 16 32 H 0.17 2.26 8.06 -2.91 -0.02 2.24 16 33 H 0.15 3.00 8.06 -2.91 -0.02 2.98 16 34 H 0.13 3.71 5.49 -2.91 -0.02 3.69 16 Total: -1.00 -77.00 296.04 2.62 -74.38 By element: Atomic # 1 Polarization: 33.02 SS G_CDS: 0.19 Total: 33.21 kcal Atomic # 6 Polarization: -9.66 SS G_CDS: 3.16 Total: -6.50 kcal Atomic # 7 Polarization: -81.78 SS G_CDS: -1.61 Total: -83.39 kcal Atomic # 8 Polarization: -55.29 SS G_CDS: -1.93 Total: -57.22 kcal Atomic # 9 Polarization: -4.89 SS G_CDS: 0.78 Total: -4.12 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 2.03 Total: 43.63 kcal Total: -77.00 2.62 -74.38 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275058311.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.683 kcal (2) G-P(sol) polarization free energy of solvation -76.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds