Wall clock time and date at job start Mon Mar 30 2020 00:28:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.46950 * 2 1 4 4 N 1.46496 * 109.47575 * 239.99149 * 2 1 3 5 5 C 1.34777 * 119.99614 * 84.99689 * 4 2 1 6 6 O 1.21691 * 120.00328 * 0.02562 * 5 4 2 7 7 C 1.46376 * 120.00069 * 179.97438 * 5 4 2 8 8 H 1.08005 * 119.99800 * 0.02562 * 7 5 4 9 9 C 1.40047 * 120.00289 * 179.72718 * 7 5 4 10 10 N 1.30676 * 119.99832 * 0.02562 * 9 7 5 11 11 Si 1.86800 * 120.00302 * 180.02562 * 9 7 5 12 12 H 1.48509 * 109.46907 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.47048 * 119.99887 * 11 9 7 14 14 H 1.48493 * 109.47209 * 240.00134 * 11 9 7 15 15 C 1.53002 * 109.46851 * 119.99073 * 2 1 3 16 16 H 1.09000 * 109.46802 * 175.00057 * 15 2 1 17 17 O 1.42901 * 109.46958 * 55.00365 * 15 2 1 18 18 C 1.50696 * 109.47558 * 295.00395 * 15 2 1 19 19 C 1.38265 * 119.98979 * 84.72490 * 18 15 2 20 20 C 1.38224 * 120.05495 * 179.72836 * 19 18 15 21 21 C 1.38220 * 120.01937 * 0.54576 * 20 19 18 22 22 C 1.38440 * 119.97722 * 359.73283 * 21 20 19 23 23 F 1.35104 * 120.02318 * 180.02562 * 22 21 20 24 24 C 1.38174 * 119.98469 * 265.00350 * 18 15 2 25 25 H 1.08997 * 109.47198 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47400 * 300.00490 * 1 2 3 27 27 H 1.09001 * 109.47056 * 60.01036 * 1 2 3 28 28 H 0.96996 * 120.00499 * 265.00266 * 4 2 1 29 29 H 0.97000 * 119.99487 * 179.97438 * 10 9 7 30 30 H 0.96702 * 114.00008 * 300.00044 * 17 15 2 31 31 H 1.08002 * 119.97297 * 359.97438 * 19 18 15 32 32 H 1.08001 * 119.98977 * 180.27396 * 20 19 18 33 33 H 1.08003 * 120.00998 * 179.70238 * 21 20 19 34 34 H 1.08000 * 120.01449 * 0.02562 * 24 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6907 -1.1960 5 6 2.1471 -0.0185 -2.3570 6 8 1.8580 1.1623 -2.4118 7 6 2.6356 -0.7084 -3.5520 8 1 2.8926 -1.7564 -3.5033 9 6 2.7640 -0.0114 -4.7598 10 7 2.4480 1.2552 -4.8200 11 14 3.3867 -0.8920 -6.2850 12 1 3.6726 -2.3115 -5.9549 13 1 2.3528 -0.8304 -7.3491 14 1 4.6293 -0.2347 -6.7634 15 6 2.0399 -0.7211 1.2494 16 1 3.1262 -0.7993 1.2057 17 8 1.4701 -2.0302 1.3097 18 6 1.6412 0.0573 2.4766 19 6 0.3902 -0.1272 3.0358 20 6 0.0251 0.5819 4.1648 21 6 0.9064 1.4847 4.7294 22 6 2.1572 1.6745 4.1670 23 9 3.0195 2.5563 4.7184 24 6 2.5238 0.9593 3.0393 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 2.2491 -1.6319 -1.1524 29 1 2.5372 1.7381 -5.6565 30 1 0.5040 -2.0371 1.3505 31 1 -0.3009 -0.8288 2.5925 32 1 -0.9507 0.4337 4.6033 33 1 0.6192 2.0422 5.6087 34 1 3.4991 1.1069 2.5994 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000275058313.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:28:26 Heat of formation + Delta-G solvation = -115.438965 kcal Electronic energy + Delta-G solvation = -19918.482726 eV Core-core repulsion = 16537.479837 eV Total energy + Delta-G solvation = -3381.002888 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.97135 -39.96497 -37.80627 -36.48191 -33.49374 -32.35655 -31.68438 -30.64534 -29.25922 -26.54977 -25.98846 -23.01888 -22.30209 -20.71995 -19.39599 -17.95568 -17.50236 -16.58320 -16.33838 -16.04950 -15.67074 -15.41803 -14.80270 -14.56135 -14.40657 -13.89823 -13.57230 -13.26672 -12.69232 -12.61124 -12.29172 -12.13513 -11.91979 -11.64302 -11.54734 -11.17642 -11.06119 -10.83808 -10.75410 -10.48026 -10.21108 -9.93350 -9.08457 -8.87081 -8.77095 -7.63325 -7.53185 -6.19336 -4.64484 1.00260 1.06668 3.12934 3.21358 3.25912 3.41102 4.03759 4.11518 4.39551 4.48065 4.58199 4.64643 4.83178 4.97998 5.07596 5.15401 5.28869 5.32697 5.65667 5.75044 5.77291 5.88864 5.97008 6.05759 6.10240 6.13846 6.36889 6.49742 6.73439 6.77073 7.43533 7.60579 7.94414 8.09237 8.33485 9.02508 9.53747 10.59248 10.77781 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.033343 B = 0.004175 C = 0.003989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.559608 B = 6704.833869 C = 7017.816630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.129 3.871 3 H 0.084 0.916 4 N -0.758 5.758 5 C 0.555 3.445 6 O -0.581 6.581 7 C -0.544 4.544 8 H 0.068 0.932 9 C 0.088 3.912 10 N -0.768 5.768 11 Si 0.907 3.093 12 H -0.264 1.264 13 H -0.276 1.276 14 H -0.276 1.276 15 C 0.138 3.862 16 H 0.114 0.886 17 O -0.550 6.550 18 C -0.073 4.073 19 C -0.120 4.120 20 C -0.090 4.090 21 C -0.159 4.159 22 C 0.099 3.901 23 F -0.141 7.141 24 C -0.143 4.143 25 H 0.050 0.950 26 H 0.054 0.946 27 H 0.069 0.931 28 H 0.385 0.615 29 H 0.267 0.733 30 H 0.372 0.628 31 H 0.129 0.871 32 H 0.133 0.867 33 H 0.133 0.867 34 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.862 -3.370 16.168 16.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.022 3.978 3 H 0.102 0.898 4 N -0.413 5.413 5 C 0.359 3.641 6 O -0.464 6.464 7 C -0.581 4.581 8 H 0.086 0.914 9 C -0.132 4.132 10 N -0.397 5.397 11 Si 0.732 3.268 12 H -0.187 1.187 13 H -0.202 1.202 14 H -0.202 1.202 15 C 0.078 3.922 16 H 0.132 0.868 17 O -0.356 6.356 18 C -0.074 4.074 19 C -0.139 4.139 20 C -0.108 4.108 21 C -0.178 4.178 22 C 0.080 3.920 23 F -0.119 7.119 24 C -0.162 4.162 25 H 0.069 0.931 26 H 0.073 0.927 27 H 0.088 0.912 28 H 0.217 0.783 29 H 0.078 0.922 30 H 0.221 0.779 31 H 0.147 0.853 32 H 0.151 0.849 33 H 0.151 0.849 34 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -3.429 -2.458 15.999 16.545 hybrid contribution -0.034 -0.393 -0.583 0.704 sum -3.463 -2.850 15.416 16.055 Atomic orbital electron populations 1.22301 0.96938 1.01045 1.02476 1.21007 0.93620 0.97851 0.85318 0.89807 1.46134 1.73052 1.13135 1.08965 1.18251 0.77820 0.86390 0.81659 1.90598 1.54893 1.16434 1.84442 1.20928 1.46709 0.97273 0.93216 0.91355 1.25706 0.93310 0.94459 0.99724 1.70035 1.35275 1.08293 1.26114 0.86327 0.78789 0.80344 0.81371 1.18744 1.20198 1.20176 1.21253 0.99042 0.81859 0.90024 0.86810 1.86609 1.25439 1.26983 1.96609 1.20416 0.93889 0.96295 0.96831 1.20988 0.95929 1.00536 0.96406 1.20953 0.99276 0.95165 0.95379 1.21126 0.93027 1.01483 1.02115 1.17668 0.88586 0.91299 0.94415 1.91501 1.69186 1.66459 1.84792 1.21019 1.01612 0.97753 0.95770 0.93130 0.92709 0.91193 0.78288 0.92198 0.77944 0.85327 0.84942 0.84894 0.84389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.74 8.38 37.16 0.31 -2.43 16 2 C 0.13 2.34 2.44 -67.93 -0.17 2.17 16 3 H 0.08 1.76 7.58 -51.93 -0.39 1.37 16 4 N -0.76 -16.48 5.06 -55.22 -0.28 -16.76 16 5 C 0.55 15.51 7.71 -12.99 -0.10 15.41 16 6 O -0.58 -18.46 14.68 5.20 0.08 -18.38 16 7 C -0.54 -15.30 9.54 -35.63 -0.34 -15.64 16 8 H 0.07 1.78 7.85 -52.48 -0.41 1.36 16 9 C 0.09 2.44 5.50 -17.37 -0.10 2.34 16 10 N -0.77 -22.97 11.83 55.55 0.66 -22.31 16 11 Si 0.91 20.11 29.56 -169.99 -5.02 15.09 16 12 H -0.26 -5.65 7.11 56.52 0.40 -5.25 16 13 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 14 H -0.28 -6.02 7.11 56.52 0.40 -5.61 16 15 C 0.14 1.96 3.16 -27.88 -0.09 1.87 16 16 H 0.11 1.66 8.05 -51.93 -0.42 1.24 16 17 O -0.55 -7.34 12.77 -35.23 -0.45 -7.79 16 18 C -0.07 -0.93 4.73 -104.64 -0.49 -1.42 16 19 C -0.12 -1.28 7.38 -39.58 -0.29 -1.57 16 20 C -0.09 -0.85 10.04 -39.59 -0.40 -1.24 16 21 C -0.16 -1.64 10.03 -39.51 -0.40 -2.04 16 22 C 0.10 1.23 7.30 -39.42 -0.29 0.94 16 23 F -0.14 -1.84 17.27 2.25 0.04 -1.80 16 24 C -0.14 -1.84 9.66 -39.51 -0.38 -2.22 16 25 H 0.05 0.70 6.71 -51.93 -0.35 0.35 16 26 H 0.05 0.75 5.91 -51.93 -0.31 0.44 16 27 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 28 H 0.38 7.67 8.36 -40.82 -0.34 7.33 16 29 H 0.27 7.24 8.29 -40.82 -0.34 6.90 16 30 H 0.37 3.90 5.54 45.56 0.25 4.15 16 31 H 0.13 1.11 6.15 -52.49 -0.32 0.78 16 32 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 33 H 0.13 1.09 8.06 -52.48 -0.42 0.67 16 34 H 0.14 1.69 8.06 -52.49 -0.42 1.27 16 LS Contribution 295.11 15.07 4.45 4.45 Total: -1.00 -34.13 295.11 -6.38 -40.51 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: -3.12 Total: 10.81 kcal Atomic # 6 Polarization: -1.09 SS G_CDS: -2.73 Total: -3.82 kcal Atomic # 7 Polarization: -39.45 SS G_CDS: 0.38 Total: -39.07 kcal Atomic # 8 Polarization: -25.80 SS G_CDS: -0.37 Total: -26.17 kcal Atomic # 9 Polarization: -1.84 SS G_CDS: 0.04 Total: -1.80 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.09 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -34.13 -6.38 -40.51 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275058313.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.928 kcal (2) G-P(sol) polarization free energy of solvation -34.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds