Wall clock time and date at job start Mon Mar 30 2020 00:44:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46497 * 109.47324 * 2 1 4 4 C 1.34791 * 120.00016 * 83.94392 * 3 2 1 5 5 O 1.21682 * 119.99562 * 180.02562 * 4 3 2 6 6 C 1.46375 * 119.99775 * 0.02562 * 4 3 2 7 7 H 1.07997 * 119.99606 * 6.75734 * 6 4 3 8 8 C 1.40039 * 119.99787 * 186.75573 * 6 4 3 9 9 N 1.30676 * 120.00266 * 7.31225 * 8 6 4 10 10 Si 1.86804 * 120.00165 * 187.31373 * 8 6 4 11 11 H 1.48498 * 109.47148 * 94.98112 * 10 8 6 12 12 H 1.48497 * 109.47366 * 214.98446 * 10 8 6 13 13 H 1.48500 * 109.46976 * 334.98126 * 10 8 6 14 14 C 1.46493 * 120.00325 * 263.94673 * 3 2 1 15 15 H 1.09004 * 109.47693 * 180.67811 * 14 3 2 16 16 C 1.53004 * 109.46832 * 300.67390 * 14 3 2 17 17 C 1.53000 * 109.47261 * 60.67206 * 14 3 2 18 18 C 1.50705 * 109.47063 * 174.62519 * 17 14 3 19 19 C 1.38423 * 122.53630 * 94.52506 * 18 17 14 20 20 C 1.33395 * 114.91660 * 179.97438 * 19 18 17 21 21 S 1.75882 * 109.59443 * 0.02562 * 20 19 18 22 22 C 1.33386 * 122.53649 * 274.22804 * 18 17 14 23 23 H 1.09003 * 109.46942 * 55.83298 * 1 2 3 24 24 H 1.08996 * 109.47377 * 175.83901 * 1 2 3 25 25 H 1.09004 * 109.46908 * 295.83983 * 1 2 3 26 26 H 1.08999 * 109.47273 * 120.00186 * 2 1 3 27 27 H 1.08998 * 109.46984 * 240.00098 * 2 1 3 28 28 H 0.96994 * 120.00023 * 180.02562 * 9 8 6 29 29 H 1.08996 * 109.47251 * 299.99724 * 16 14 3 30 30 H 1.08998 * 109.47412 * 60.00171 * 16 14 3 31 31 H 1.09001 * 109.47306 * 180.02562 * 16 14 3 32 32 H 1.09004 * 109.46891 * 294.62586 * 17 14 3 33 33 H 1.09000 * 109.46652 * 54.62599 * 17 14 3 34 34 H 1.07996 * 122.54288 * 359.95157 * 19 18 17 35 35 H 1.07998 * 125.20267 * 179.97438 * 20 19 18 36 36 H 1.07997 * 125.20873 * 0.03265 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1269 2.0576 1.1608 5 8 2.5321 3.2050 1.1607 6 6 1.7574 1.4120 2.4214 7 1 1.5025 0.3626 2.4362 8 6 1.7344 2.1550 3.6082 9 7 1.9020 3.4504 3.5715 10 14 1.4640 1.2943 5.2440 11 1 2.7774 0.9987 5.8708 12 1 0.6739 2.1745 6.1418 13 1 0.7258 0.0255 5.0196 14 6 2.3887 2.0272 -1.2616 15 1 2.7375 3.0405 -1.0623 16 6 3.5050 1.2270 -1.9358 17 6 1.1697 2.0798 -2.1847 18 6 1.5139 2.8599 -3.4273 19 6 1.9492 2.2512 -4.5919 20 6 2.2105 3.0863 -5.5987 21 16 1.9029 4.7409 -5.0877 22 6 1.4167 4.1887 -3.4901 23 1 -0.3633 0.5772 -0.8503 24 1 -0.3634 -1.0249 -0.0746 25 1 -0.3633 0.4479 0.9250 26 1 1.8933 -0.5139 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8865 3.9650 4.3935 29 1 4.3734 1.1896 -1.2782 30 1 3.1562 0.2137 -2.1352 31 1 3.7809 1.7079 -2.8743 32 1 0.8792 1.0661 -2.4609 33 1 0.3430 2.5666 -1.6674 34 1 2.0686 1.1814 -4.6786 35 1 2.5585 2.7916 -6.5777 36 1 1.0917 4.8281 -2.6826 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000275200265.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:44 Heat of formation + Delta-G solvation = -11.586527 kcal Electronic energy + Delta-G solvation = -18468.464625 eV Core-core repulsion = 15658.178293 eV Total energy + Delta-G solvation = -2810.286333 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.92380 -37.51977 -34.78748 -32.58707 -32.11833 -29.79496 -28.53320 -26.56972 -26.17240 -23.47999 -22.31031 -20.99063 -18.61127 -18.43139 -17.50015 -16.40513 -15.79623 -15.09552 -14.90596 -14.27222 -13.61586 -13.47910 -12.94251 -12.86391 -12.76677 -12.45952 -12.43570 -11.96349 -11.86874 -11.66646 -11.39257 -11.35405 -10.97861 -10.86982 -10.68577 -10.65754 -10.37283 -10.22636 -10.00599 -9.94385 -8.83421 -8.66329 -8.24707 -7.54379 -7.18387 -6.20832 -4.60650 1.15049 1.79491 2.11488 2.86253 3.13960 3.21671 3.24300 4.09604 4.53724 4.58061 5.01509 5.31070 5.42693 5.56935 5.62536 5.70510 5.78148 5.80681 5.92674 5.99483 6.13021 6.17040 6.17970 6.21153 6.30841 6.41686 6.56683 6.64749 6.69636 6.81071 6.85364 7.01164 7.46922 7.72699 8.18880 8.41375 9.04587 9.46677 10.59663 10.78330 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.032212 B = 0.004802 C = 0.004462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.042361 B = 5829.378982 C = 6273.887421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.127 3.873 3 N -0.637 5.637 4 C 0.561 3.439 5 O -0.581 6.581 6 C -0.542 4.542 7 H 0.073 0.927 8 C 0.089 3.911 9 N -0.770 5.770 10 Si 0.903 3.097 11 H -0.273 1.273 12 H -0.280 1.280 13 H -0.264 1.264 14 C 0.151 3.849 15 H 0.093 0.907 16 C -0.157 4.157 17 C -0.069 4.069 18 C -0.090 4.090 19 C -0.122 4.122 20 C -0.219 4.219 21 S 0.070 5.930 22 C -0.203 4.203 23 H 0.048 0.952 24 H 0.045 0.955 25 H 0.067 0.933 26 H 0.071 0.929 27 H 0.051 0.949 28 H 0.268 0.732 29 H 0.053 0.947 30 H 0.049 0.951 31 H 0.055 0.945 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.138 0.862 35 H 0.160 0.840 36 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.544 -4.078 -14.065 14.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.002 3.998 3 N -0.374 5.374 4 C 0.367 3.633 5 O -0.464 6.464 6 C -0.579 4.579 7 H 0.091 0.909 8 C -0.130 4.130 9 N -0.399 5.399 10 Si 0.728 3.272 11 H -0.198 1.198 12 H -0.205 1.205 13 H -0.189 1.189 14 C 0.045 3.955 15 H 0.111 0.889 16 C -0.215 4.215 17 C -0.110 4.110 18 C -0.102 4.102 19 C -0.153 4.153 20 C -0.355 4.355 21 S 0.333 5.667 22 C -0.338 4.338 23 H 0.067 0.933 24 H 0.064 0.936 25 H 0.086 0.914 26 H 0.090 0.910 27 H 0.069 0.931 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.087 0.913 33 H 0.092 0.908 34 H 0.156 0.844 35 H 0.177 0.823 36 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -1.185 -1.828 -14.662 14.823 hybrid contribution -0.305 -1.870 1.431 2.375 sum -1.490 -3.699 -13.231 13.818 Atomic orbital electron populations 1.22300 0.97743 1.00097 1.02805 1.21055 0.93223 0.84821 1.00699 1.48098 1.70395 1.13193 1.05710 1.18239 0.77585 0.85212 0.82297 1.90575 1.51128 1.18701 1.86016 1.20990 1.49197 0.96868 0.90802 0.90924 1.25707 0.92758 0.94376 1.00171 1.69990 1.35453 1.06144 1.28265 0.86433 0.78812 0.79989 0.81990 1.19820 1.20539 1.18855 1.20542 0.91894 0.98823 0.84205 0.88918 1.22170 0.99287 0.99893 1.00148 1.20864 0.99589 0.98747 0.91771 1.19019 1.01347 0.93249 0.96576 1.20131 1.01991 1.00943 0.92269 1.25502 1.10705 0.95669 1.03585 1.84137 1.66068 1.08659 1.07838 1.25532 1.09636 0.98551 1.00128 0.93283 0.93611 0.91406 0.91044 0.93103 0.92145 0.92746 0.93162 0.92626 0.91261 0.90777 0.84444 0.82260 0.81772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.86 10.00 37.16 0.37 -2.49 16 2 C 0.13 2.30 5.07 -4.04 -0.02 2.28 16 3 N -0.64 -14.05 2.39 -167.76 -0.40 -14.45 16 4 C 0.56 15.67 7.54 -12.98 -0.10 15.57 16 5 O -0.58 -18.60 14.44 5.20 0.08 -18.52 16 6 C -0.54 -14.94 8.20 -35.64 -0.29 -15.23 16 7 H 0.07 1.84 6.08 -52.49 -0.32 1.52 16 8 C 0.09 2.47 5.48 -17.37 -0.10 2.37 16 9 N -0.77 -22.90 11.92 55.55 0.66 -22.24 16 10 Si 0.90 20.00 29.57 -169.99 -5.03 14.97 16 11 H -0.27 -5.98 7.11 56.52 0.40 -5.57 16 12 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 13 H -0.26 -5.62 7.11 56.52 0.40 -5.22 16 14 C 0.15 2.90 2.70 -67.93 -0.18 2.72 16 15 H 0.09 2.12 6.90 -51.93 -0.36 1.76 16 16 C -0.16 -2.54 8.88 37.16 0.33 -2.21 16 17 C -0.07 -1.11 3.78 -27.88 -0.11 -1.21 16 18 C -0.09 -1.31 4.46 -106.25 -0.47 -1.78 16 19 C -0.12 -1.53 8.76 -41.21 -0.36 -1.89 16 20 C -0.22 -2.50 11.23 29.04 0.33 -2.17 16 21 S 0.07 0.85 23.34 -107.50 -2.51 -1.66 16 22 C -0.20 -2.97 10.99 29.04 0.32 -2.65 16 23 H 0.05 0.78 6.09 -51.93 -0.32 0.47 16 24 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.07 1.31 7.61 -51.93 -0.40 0.92 16 26 H 0.07 1.37 6.37 -51.93 -0.33 1.03 16 27 H 0.05 0.79 6.41 -51.93 -0.33 0.45 16 28 H 0.27 7.26 8.29 -40.82 -0.34 6.92 16 29 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 30 H 0.05 0.72 6.64 -51.93 -0.34 0.38 16 31 H 0.05 0.82 6.56 -51.93 -0.34 0.48 16 32 H 0.07 1.01 7.12 -51.93 -0.37 0.64 16 33 H 0.07 1.32 7.96 -51.93 -0.41 0.91 16 34 H 0.14 1.49 8.06 -52.49 -0.42 1.06 16 35 H 0.16 1.39 8.06 -52.49 -0.42 0.96 16 36 H 0.16 2.43 8.06 -52.49 -0.42 2.01 16 LS Contribution 306.53 15.07 4.62 4.62 Total: -1.00 -32.56 306.53 -7.63 -40.19 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -4.77 Total: 3.78 kcal Atomic # 6 Polarization: -6.42 SS G_CDS: -0.28 Total: -6.70 kcal Atomic # 7 Polarization: -36.95 SS G_CDS: 0.26 Total: -36.69 kcal Atomic # 8 Polarization: -18.60 SS G_CDS: 0.08 Total: -18.52 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.03 Total: 14.97 kcal Atomic # 16 Polarization: 0.85 SS G_CDS: -2.51 Total: -1.66 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -32.56 -7.63 -40.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275200265.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.602 kcal (2) G-P(sol) polarization free energy of solvation -32.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds