Wall clock time and date at job start Mon Mar 30 2020 00:44:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46497 * 109.47324 * 2 1 4 4 C 1.34791 * 120.00016 * 83.94392 * 3 2 1 5 5 O 1.21682 * 119.99562 * 180.02562 * 4 3 2 6 6 C 1.46375 * 119.99775 * 0.02562 * 4 3 2 7 7 H 1.07997 * 119.99606 * 6.75734 * 6 4 3 8 8 C 1.40039 * 119.99787 * 186.75573 * 6 4 3 9 9 N 1.30676 * 120.00266 * 7.31225 * 8 6 4 10 10 Si 1.86804 * 120.00165 * 187.31373 * 8 6 4 11 11 H 1.48498 * 109.47148 * 94.98112 * 10 8 6 12 12 H 1.48497 * 109.47366 * 214.98446 * 10 8 6 13 13 H 1.48500 * 109.46976 * 334.98126 * 10 8 6 14 14 C 1.46493 * 120.00325 * 263.94673 * 3 2 1 15 15 H 1.09004 * 109.47693 * 180.67811 * 14 3 2 16 16 C 1.53004 * 109.46832 * 300.67390 * 14 3 2 17 17 C 1.53000 * 109.47261 * 60.67206 * 14 3 2 18 18 C 1.50705 * 109.47063 * 174.62519 * 17 14 3 19 19 C 1.38423 * 122.53630 * 94.52506 * 18 17 14 20 20 C 1.33395 * 114.91660 * 179.97438 * 19 18 17 21 21 S 1.75882 * 109.59443 * 0.02562 * 20 19 18 22 22 C 1.33386 * 122.53649 * 274.22804 * 18 17 14 23 23 H 1.09003 * 109.46942 * 55.83298 * 1 2 3 24 24 H 1.08996 * 109.47377 * 175.83901 * 1 2 3 25 25 H 1.09004 * 109.46908 * 295.83983 * 1 2 3 26 26 H 1.08999 * 109.47273 * 120.00186 * 2 1 3 27 27 H 1.08998 * 109.46984 * 240.00098 * 2 1 3 28 28 H 0.96994 * 120.00023 * 180.02562 * 9 8 6 29 29 H 1.08996 * 109.47251 * 299.99724 * 16 14 3 30 30 H 1.08998 * 109.47412 * 60.00171 * 16 14 3 31 31 H 1.09001 * 109.47306 * 180.02562 * 16 14 3 32 32 H 1.09004 * 109.46891 * 294.62586 * 17 14 3 33 33 H 1.09000 * 109.46652 * 54.62599 * 17 14 3 34 34 H 1.07996 * 122.54288 * 359.95157 * 19 18 17 35 35 H 1.07998 * 125.20267 * 179.97438 * 20 19 18 36 36 H 1.07997 * 125.20873 * 0.03265 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1269 2.0576 1.1608 5 8 2.5321 3.2050 1.1607 6 6 1.7574 1.4120 2.4214 7 1 1.5025 0.3626 2.4362 8 6 1.7344 2.1550 3.6082 9 7 1.9020 3.4504 3.5715 10 14 1.4640 1.2943 5.2440 11 1 2.7774 0.9987 5.8708 12 1 0.6739 2.1745 6.1418 13 1 0.7258 0.0255 5.0196 14 6 2.3887 2.0272 -1.2616 15 1 2.7375 3.0405 -1.0623 16 6 3.5050 1.2270 -1.9358 17 6 1.1697 2.0798 -2.1847 18 6 1.5139 2.8599 -3.4273 19 6 1.9492 2.2512 -4.5919 20 6 2.2105 3.0863 -5.5987 21 16 1.9029 4.7409 -5.0877 22 6 1.4167 4.1887 -3.4901 23 1 -0.3633 0.5772 -0.8503 24 1 -0.3634 -1.0249 -0.0746 25 1 -0.3633 0.4479 0.9250 26 1 1.8933 -0.5139 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8865 3.9650 4.3935 29 1 4.3734 1.1896 -1.2782 30 1 3.1562 0.2137 -2.1352 31 1 3.7809 1.7079 -2.8743 32 1 0.8792 1.0661 -2.4609 33 1 0.3430 2.5666 -1.6674 34 1 2.0686 1.1814 -4.6786 35 1 2.5585 2.7916 -6.5777 36 1 1.0917 4.8281 -2.6826 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000275200265.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:44 Heat of formation + Delta-G solvation = -31.738211 kcal Electronic energy + Delta-G solvation = -18469.338468 eV Core-core repulsion = 15658.178293 eV Total energy + Delta-G solvation = -2811.160175 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.42564 -39.00476 -36.64429 -34.65532 -33.61443 -31.01436 -30.09554 -28.22039 -27.83170 -24.69803 -23.84753 -22.58502 -20.23991 -19.61984 -18.70212 -18.19256 -17.68067 -16.73022 -16.11376 -15.99388 -15.24698 -14.94020 -14.42129 -14.31448 -14.14825 -13.90265 -13.62474 -13.34303 -13.26148 -13.13543 -13.00055 -12.86083 -12.72603 -12.46514 -12.26574 -12.05002 -11.93253 -11.73947 -11.55318 -11.46187 -10.90925 -9.75168 -9.67315 -9.34519 -8.94381 -8.28822 -6.77680 0.12644 0.78931 1.11468 1.38997 1.40411 1.55523 1.80476 2.24648 2.49333 2.88739 3.65530 3.93321 4.14780 4.16987 4.27886 4.35822 4.48163 4.57939 4.66298 4.71169 4.76087 4.77460 4.87552 4.97417 5.04933 5.14905 5.19283 5.29642 5.33675 5.38941 5.57345 5.59072 5.66205 5.88606 6.21628 6.53089 6.91706 7.49520 8.52373 8.71113 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.032212 B = 0.004802 C = 0.004462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.042361 B = 5829.378982 C = 6273.887421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.121 3.879 3 N -0.637 5.637 4 C 0.543 3.457 5 O -0.639 6.639 6 C -0.563 4.563 7 H 0.092 0.908 8 C 0.030 3.970 9 N -0.826 5.826 10 Si 0.990 3.010 11 H -0.266 1.266 12 H -0.274 1.274 13 H -0.245 1.245 14 C 0.148 3.852 15 H 0.042 0.958 16 C -0.144 4.144 17 C -0.054 4.054 18 C -0.095 4.095 19 C -0.134 4.134 20 C -0.203 4.203 21 S 0.091 5.909 22 C -0.239 4.239 23 H 0.053 0.947 24 H 0.083 0.917 25 H 0.033 0.967 26 H 0.062 0.938 27 H 0.090 0.910 28 H 0.272 0.728 29 H 0.033 0.967 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.096 0.904 33 H 0.045 0.955 34 H 0.164 0.836 35 H 0.195 0.805 36 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.815 -7.136 -15.793 17.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.002 4.002 3 N -0.372 5.372 4 C 0.349 3.651 5 O -0.526 6.526 6 C -0.599 4.599 7 H 0.110 0.890 8 C -0.184 4.184 9 N -0.456 5.456 10 Si 0.810 3.190 11 H -0.191 1.191 12 H -0.200 1.200 13 H -0.167 1.167 14 C 0.043 3.957 15 H 0.060 0.940 16 C -0.202 4.202 17 C -0.095 4.095 18 C -0.108 4.108 19 C -0.164 4.164 20 C -0.338 4.338 21 S 0.354 5.646 22 C -0.374 4.374 23 H 0.072 0.928 24 H 0.102 0.898 25 H 0.052 0.948 26 H 0.080 0.920 27 H 0.109 0.891 28 H 0.082 0.918 29 H 0.053 0.947 30 H 0.099 0.901 31 H 0.093 0.907 32 H 0.114 0.886 33 H 0.064 0.936 34 H 0.181 0.819 35 H 0.212 0.788 36 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -1.472 -4.936 -16.446 17.234 hybrid contribution -0.210 -0.880 1.838 2.049 sum -1.682 -5.816 -14.608 15.813 Atomic orbital electron populations 1.22211 0.96457 1.02238 1.01253 1.21324 0.94254 0.82491 1.02153 1.47961 1.69475 1.14552 1.05195 1.18637 0.77257 0.84856 0.84379 1.90525 1.53576 1.21164 1.87378 1.21470 1.49210 0.97865 0.91354 0.88990 1.26942 0.91671 0.94934 1.04900 1.70173 1.37174 1.08502 1.29782 0.85122 0.79060 0.79137 0.75726 1.19140 1.19951 1.16749 1.20639 0.94447 0.96669 0.83934 0.93961 1.22048 0.97072 1.01051 0.99991 1.20627 0.96962 1.00221 0.91653 1.19038 1.01903 0.93063 0.96810 1.20259 1.02447 1.02366 0.91292 1.25953 1.08724 0.94485 1.04664 1.84057 1.65304 1.09631 1.05580 1.25587 1.11159 0.99083 1.01565 0.92769 0.89796 0.94791 0.91991 0.89144 0.91809 0.94748 0.90139 0.90737 0.88581 0.93633 0.81869 0.78771 0.83790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.17 10.00 71.98 0.72 -4.45 16 2 C 0.12 4.18 5.07 86.38 0.44 4.62 16 3 N -0.64 -28.64 2.39 -802.89 -1.92 -30.55 16 4 C 0.54 31.81 7.54 86.36 0.65 32.46 16 5 O -0.64 -43.79 14.44 -4.29 -0.06 -43.85 16 6 C -0.56 -31.81 8.20 24.83 0.20 -31.61 16 7 H 0.09 4.66 6.08 -2.91 -0.02 4.64 16 8 C 0.03 1.70 5.48 85.30 0.47 2.16 16 9 N -0.83 -51.50 11.92 21.83 0.26 -51.24 16 10 Si 0.99 41.45 29.57 68.60 2.03 43.47 16 11 H -0.27 -10.81 7.11 99.48 0.71 -10.11 16 12 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 13 H -0.24 -9.35 7.11 99.48 0.71 -8.64 16 14 C 0.15 5.82 2.70 44.99 0.12 5.94 16 15 H 0.04 2.09 6.90 -2.38 -0.02 2.07 16 16 C -0.14 -4.44 8.88 71.98 0.64 -3.80 16 17 C -0.05 -1.73 3.78 29.85 0.11 -1.61 16 18 C -0.10 -2.71 4.46 -20.92 -0.09 -2.80 16 19 C -0.13 -2.91 8.76 21.22 0.19 -2.72 16 20 C -0.20 -3.90 11.23 66.72 0.75 -3.15 16 21 S 0.09 2.10 23.34 -56.49 -1.32 0.78 16 22 C -0.24 -7.19 10.99 66.72 0.73 -6.45 16 23 H 0.05 1.64 6.09 -2.39 -0.01 1.63 16 24 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 25 H 0.03 1.29 7.61 -2.38 -0.02 1.27 16 26 H 0.06 2.27 6.37 -2.39 -0.02 2.26 16 27 H 0.09 2.43 6.41 -2.39 -0.02 2.41 16 28 H 0.27 15.43 8.29 -92.71 -0.77 14.66 16 29 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.08 1.99 6.64 -2.39 -0.02 1.98 16 31 H 0.07 2.03 6.56 -2.39 -0.02 2.01 16 32 H 0.10 2.53 7.12 -2.38 -0.02 2.52 16 33 H 0.04 1.70 7.96 -2.39 -0.02 1.68 16 34 H 0.16 2.70 8.06 -2.91 -0.02 2.68 16 35 H 0.20 2.36 8.06 -2.91 -0.02 2.34 16 36 H 0.14 4.77 8.06 -2.91 -0.02 4.74 16 Total: -1.00 -76.91 306.53 5.00 -71.91 By element: Atomic # 1 Polarization: 19.81 SS G_CDS: 1.08 Total: 20.89 kcal Atomic # 6 Polarization: -16.34 SS G_CDS: 4.93 Total: -11.42 kcal Atomic # 7 Polarization: -80.13 SS G_CDS: -1.66 Total: -81.79 kcal Atomic # 8 Polarization: -43.79 SS G_CDS: -0.06 Total: -43.85 kcal Atomic # 14 Polarization: 41.45 SS G_CDS: 2.03 Total: 43.47 kcal Atomic # 16 Polarization: 2.10 SS G_CDS: -1.32 Total: 0.78 kcal Total: -76.91 5.00 -71.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275200265.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.170 kcal (2) G-P(sol) polarization free energy of solvation -76.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds