Wall clock time and date at job start Mon Mar 30 2020 00:44:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 109.47473 * 2 1 4 4 C 1.34780 * 119.99743 * 90.00017 * 3 2 1 5 5 O 1.21686 * 120.00024 * 180.02562 * 4 3 2 6 6 C 1.46375 * 120.00151 * 359.97438 * 4 3 2 7 7 H 1.07999 * 119.99985 * 0.02562 * 6 4 3 8 8 C 1.40051 * 120.00173 * 180.02562 * 6 4 3 9 9 N 1.30678 * 119.99721 * 0.02562 * 8 6 4 10 10 Si 1.86792 * 120.00231 * 180.02562 * 8 6 4 11 11 H 1.48499 * 109.47164 * 89.99807 * 10 8 6 12 12 H 1.48503 * 109.47244 * 209.99967 * 10 8 6 13 13 H 1.48509 * 109.46890 * 330.00014 * 10 8 6 14 14 C 1.46500 * 120.00115 * 270.00004 * 3 2 1 15 15 H 1.09001 * 109.46961 * 179.97438 * 14 3 2 16 16 C 1.53001 * 109.46971 * 59.99923 * 14 3 2 17 17 C 1.52994 * 109.47036 * 300.00026 * 14 3 2 18 18 C 1.50700 * 109.47200 * 294.99404 * 17 14 3 19 19 C 1.38429 * 122.53403 * 90.00313 * 18 17 14 20 20 C 1.33393 * 114.91570 * 179.97438 * 19 18 17 21 21 S 1.75877 * 109.59655 * 359.97438 * 20 19 18 22 22 C 1.33385 * 122.54488 * 269.71462 * 18 17 14 23 23 H 1.09002 * 109.47153 * 59.99757 * 1 2 3 24 24 H 1.09001 * 109.46832 * 299.99948 * 1 2 3 25 25 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47153 * 120.00243 * 2 1 3 27 27 H 1.08998 * 109.47533 * 239.99872 * 2 1 3 28 28 H 0.96996 * 120.00130 * 179.97438 * 9 8 6 29 29 H 1.09001 * 109.47069 * 59.99481 * 16 14 3 30 30 H 1.08996 * 109.47289 * 180.02562 * 16 14 3 31 31 H 1.09001 * 109.47158 * 299.99732 * 16 14 3 32 32 H 1.09000 * 109.47538 * 55.00161 * 17 14 3 33 33 H 1.09009 * 109.46677 * 175.00234 * 17 14 3 34 34 H 1.07992 * 122.54114 * 0.02562 * 19 18 17 35 35 H 1.08000 * 125.19523 * 179.97438 * 20 19 18 36 36 H 1.07998 * 125.19931 * 0.02562 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2430 2.0165 1.1673 5 8 2.6483 3.1639 1.1673 6 6 1.9985 1.3266 2.4349 7 1 1.6385 0.3084 2.4349 8 6 2.2314 1.9870 3.6478 9 7 2.6666 3.2191 3.6478 10 14 1.9201 1.1064 5.2655 11 1 3.1577 0.4068 5.6944 12 1 1.5270 2.0963 6.3003 13 1 0.8278 0.1160 5.0877 14 6 2.2626 2.0718 -1.2687 15 1 2.6195 3.0823 -1.0695 16 6 0.9616 2.1398 -2.0710 17 6 3.3171 1.3069 -2.0710 18 6 4.6325 1.3453 -1.3366 19 6 4.9973 0.3819 -0.4119 20 6 6.1948 0.5642 0.1468 21 16 6.9341 2.0210 -0.5047 22 6 5.5358 2.3070 -1.5325 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5139 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 2.8276 3.6766 4.4878 29 1 0.2103 2.6847 -1.4994 30 1 1.1433 2.6532 -3.0151 31 1 0.6044 1.1294 -2.2702 32 1 2.9997 0.2714 -2.1939 33 1 3.4344 1.7698 -3.0509 34 1 4.3611 -0.4542 -0.1624 35 1 6.6419 -0.0838 0.8861 36 1 5.4248 3.1354 -2.2164 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000275200266.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:47 Heat of formation + Delta-G solvation = -7.055041 kcal Electronic energy + Delta-G solvation = -19082.571603 eV Core-core repulsion = 16272.481770 eV Total energy + Delta-G solvation = -2810.089833 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.82052 -37.08147 -34.76874 -32.52852 -32.09228 -29.35250 -28.78068 -26.59737 -26.07930 -22.70662 -22.32763 -21.10347 -18.71918 -18.02576 -17.16328 -16.44358 -15.75898 -15.11894 -14.55228 -13.98409 -13.91334 -13.04417 -12.81856 -12.65468 -12.47812 -12.37188 -12.21934 -12.05538 -11.88064 -11.47369 -11.38341 -11.18961 -10.93973 -10.84064 -10.77084 -10.38379 -10.27855 -10.17593 -9.98484 -9.82466 -8.80136 -8.24920 -7.81986 -7.46774 -7.10447 -6.12440 -4.56488 1.56646 2.20924 2.50124 3.14915 3.22311 3.24799 3.30840 4.11998 4.59154 4.63950 5.31864 5.44366 5.56721 5.73141 5.74194 5.76394 5.84286 5.93728 6.00201 6.07107 6.14081 6.17847 6.24875 6.27811 6.40233 6.57178 6.66721 6.69413 6.80143 6.96068 6.97842 7.08120 7.50511 7.77927 8.23427 8.46284 9.09343 9.54586 10.66107 10.86886 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.015406 B = 0.008718 C = 0.006576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1817.022225 B = 3211.039003 C = 4256.893255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.125 3.875 3 N -0.631 5.631 4 C 0.564 3.436 5 O -0.576 6.576 6 C -0.541 4.541 7 H 0.070 0.930 8 C 0.089 3.911 9 N -0.767 5.767 10 Si 0.899 3.101 11 H -0.273 1.273 12 H -0.280 1.280 13 H -0.265 1.265 14 C 0.148 3.852 15 H 0.092 0.908 16 C -0.158 4.158 17 C -0.070 4.070 18 C -0.076 4.076 19 C -0.107 4.107 20 C -0.210 4.210 21 S 0.063 5.937 22 C -0.213 4.213 23 H 0.051 0.949 24 H 0.062 0.938 25 H 0.044 0.956 26 H 0.075 0.925 27 H 0.047 0.953 28 H 0.266 0.734 29 H 0.056 0.944 30 H 0.049 0.951 31 H 0.054 0.946 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.135 0.865 35 H 0.157 0.843 36 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.238 -6.546 -9.424 11.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.000 4.000 3 N -0.368 5.368 4 C 0.370 3.630 5 O -0.459 6.459 6 C -0.578 4.578 7 H 0.088 0.912 8 C -0.131 4.131 9 N -0.396 5.396 10 Si 0.724 3.276 11 H -0.199 1.199 12 H -0.206 1.206 13 H -0.189 1.189 14 C 0.042 3.958 15 H 0.110 0.890 16 C -0.216 4.216 17 C -0.111 4.111 18 C -0.088 4.088 19 C -0.137 4.137 20 C -0.345 4.345 21 S 0.326 5.674 22 C -0.348 4.348 23 H 0.070 0.930 24 H 0.081 0.919 25 H 0.063 0.937 26 H 0.094 0.906 27 H 0.066 0.934 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.152 0.848 35 H 0.175 0.825 36 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 3.930 -4.980 -9.044 11.047 hybrid contribution -1.608 -1.211 0.790 2.163 sum 2.321 -6.191 -8.254 10.576 Atomic orbital electron populations 1.22377 0.98037 1.00227 1.02507 1.21078 0.92981 0.85208 1.00741 1.47977 1.71050 1.12912 1.04847 1.18130 0.77024 0.85675 0.82197 1.90586 1.50433 1.18699 1.86132 1.20971 1.47291 1.00190 0.89318 0.91230 1.25696 0.92962 0.94332 1.00066 1.70026 1.32484 1.10137 1.26956 0.86508 0.79223 0.79830 0.82019 1.19868 1.20571 1.18943 1.20591 0.92284 0.98016 0.84914 0.88955 1.22269 0.98762 1.01305 0.99290 1.20780 0.91593 1.01431 0.97343 1.18758 0.96351 0.95041 0.98689 1.19982 0.95538 1.00791 0.97395 1.25391 1.00584 1.01538 1.07034 1.83882 1.21279 1.23600 1.38610 1.25214 0.98302 1.04425 1.06852 0.92971 0.91863 0.93672 0.90635 0.93419 0.92334 0.92474 0.93149 0.92689 0.91285 0.91327 0.84758 0.82537 0.82660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.83 9.96 37.16 0.37 -2.46 16 2 C 0.12 2.23 5.13 -4.04 -0.02 2.21 16 3 N -0.63 -13.53 1.90 -167.76 -0.32 -13.85 16 4 C 0.56 15.54 7.61 -12.99 -0.10 15.44 16 5 O -0.58 -18.37 14.35 5.20 0.07 -18.29 16 6 C -0.54 -14.91 8.74 -35.63 -0.31 -15.22 16 7 H 0.07 1.77 6.00 -52.49 -0.31 1.45 16 8 C 0.09 2.47 5.50 -17.36 -0.10 2.37 16 9 N -0.77 -23.04 11.83 55.55 0.66 -22.39 16 10 Si 0.90 20.23 29.56 -169.99 -5.02 15.20 16 11 H -0.27 -6.04 7.11 56.52 0.40 -5.63 16 12 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 13 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 14 C 0.15 2.78 2.63 -67.93 -0.18 2.60 16 15 H 0.09 2.08 6.90 -51.93 -0.36 1.72 16 16 C -0.16 -2.46 8.14 37.16 0.30 -2.15 16 17 C -0.07 -1.11 4.90 -27.89 -0.14 -1.24 16 18 C -0.08 -1.35 4.83 -106.25 -0.51 -1.86 16 19 C -0.11 -1.92 9.73 -41.20 -0.40 -2.32 16 20 C -0.21 -3.64 11.23 29.04 0.33 -3.31 16 21 S 0.06 1.05 23.34 -107.50 -2.51 -1.45 16 22 C -0.21 -3.66 10.98 29.04 0.32 -3.35 16 23 H 0.05 0.80 5.44 -51.93 -0.28 0.52 16 24 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 25 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.08 1.44 6.09 -51.93 -0.32 1.12 16 27 H 0.05 0.72 6.34 -51.93 -0.33 0.40 16 28 H 0.27 7.32 8.29 -40.82 -0.34 6.98 16 29 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.05 0.77 6.17 -51.93 -0.32 0.45 16 32 H 0.07 0.99 6.46 -51.93 -0.34 0.66 16 33 H 0.07 0.92 8.12 -51.92 -0.42 0.50 16 34 H 0.13 2.31 7.93 -52.49 -0.42 1.89 16 35 H 0.16 2.36 8.06 -52.49 -0.42 1.94 16 36 H 0.16 2.35 8.06 -52.49 -0.42 1.93 16 LS Contribution 308.11 15.07 4.64 4.64 Total: -1.00 -33.23 308.11 -7.68 -40.91 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -4.77 Total: 4.52 kcal Atomic # 6 Polarization: -8.86 SS G_CDS: -0.44 Total: -9.30 kcal Atomic # 7 Polarization: -36.57 SS G_CDS: 0.34 Total: -36.24 kcal Atomic # 8 Polarization: -18.37 SS G_CDS: 0.07 Total: -18.29 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.20 kcal Atomic # 16 Polarization: 1.05 SS G_CDS: -2.51 Total: -1.45 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -33.23 -7.68 -40.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275200266.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.855 kcal (2) G-P(sol) polarization free energy of solvation -33.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds