Wall clock time and date at job start Mon Mar 30 2020 00:44:47
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 N 1.46500 * 109.47473 * 2 1
4 4 C 1.34780 * 119.99743 * 90.00017 * 3 2 1
5 5 O 1.21686 * 120.00024 * 180.02562 * 4 3 2
6 6 C 1.46375 * 120.00151 * 359.97438 * 4 3 2
7 7 H 1.07999 * 119.99985 * 0.02562 * 6 4 3
8 8 C 1.40051 * 120.00173 * 180.02562 * 6 4 3
9 9 N 1.30678 * 119.99721 * 0.02562 * 8 6 4
10 10 Si 1.86792 * 120.00231 * 180.02562 * 8 6 4
11 11 H 1.48499 * 109.47164 * 89.99807 * 10 8 6
12 12 H 1.48503 * 109.47244 * 209.99967 * 10 8 6
13 13 H 1.48509 * 109.46890 * 330.00014 * 10 8 6
14 14 C 1.46500 * 120.00115 * 270.00004 * 3 2 1
15 15 H 1.09001 * 109.46961 * 179.97438 * 14 3 2
16 16 C 1.53001 * 109.46971 * 59.99923 * 14 3 2
17 17 C 1.52994 * 109.47036 * 300.00026 * 14 3 2
18 18 C 1.50700 * 109.47200 * 294.99404 * 17 14 3
19 19 C 1.38429 * 122.53403 * 90.00313 * 18 17 14
20 20 C 1.33393 * 114.91570 * 179.97438 * 19 18 17
21 21 S 1.75877 * 109.59655 * 359.97438 * 20 19 18
22 22 C 1.33385 * 122.54488 * 269.71462 * 18 17 14
23 23 H 1.09002 * 109.47153 * 59.99757 * 1 2 3
24 24 H 1.09001 * 109.46832 * 299.99948 * 1 2 3
25 25 H 1.09004 * 109.47261 * 179.97438 * 1 2 3
26 26 H 1.09002 * 109.47153 * 120.00243 * 2 1 3
27 27 H 1.08998 * 109.47533 * 239.99872 * 2 1 3
28 28 H 0.96996 * 120.00130 * 179.97438 * 9 8 6
29 29 H 1.09001 * 109.47069 * 59.99481 * 16 14 3
30 30 H 1.08996 * 109.47289 * 180.02562 * 16 14 3
31 31 H 1.09001 * 109.47158 * 299.99732 * 16 14 3
32 32 H 1.09000 * 109.47538 * 55.00161 * 17 14 3
33 33 H 1.09009 * 109.46677 * 175.00234 * 17 14 3
34 34 H 1.07992 * 122.54114 * 0.02562 * 19 18 17
35 35 H 1.08000 * 125.19523 * 179.97438 * 20 19 18
36 36 H 1.07998 * 125.19931 * 0.02562 * 22 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0184 1.3812 0.0000
4 6 2.2430 2.0165 1.1673
5 8 2.6483 3.1639 1.1673
6 6 1.9985 1.3266 2.4349
7 1 1.6385 0.3084 2.4349
8 6 2.2314 1.9870 3.6478
9 7 2.6666 3.2191 3.6478
10 14 1.9201 1.1064 5.2655
11 1 3.1577 0.4068 5.6944
12 1 1.5270 2.0963 6.3003
13 1 0.8278 0.1160 5.0877
14 6 2.2626 2.0718 -1.2687
15 1 2.6195 3.0823 -1.0695
16 6 0.9616 2.1398 -2.0710
17 6 3.3171 1.3069 -2.0710
18 6 4.6325 1.3453 -1.3366
19 6 4.9973 0.3819 -0.4119
20 6 6.1948 0.5642 0.1468
21 16 6.9341 2.0210 -0.5047
22 6 5.5358 2.3070 -1.5325
23 1 -0.3633 0.5139 -0.8900
24 1 -0.3633 0.5138 0.8900
25 1 -0.3634 -1.0277 -0.0005
26 1 1.8933 -0.5139 0.8900
27 1 1.8934 -0.5138 -0.8899
28 1 2.8276 3.6766 4.4878
29 1 0.2103 2.6847 -1.4994
30 1 1.1433 2.6532 -3.0151
31 1 0.6044 1.1294 -2.2702
32 1 2.9997 0.2714 -2.1939
33 1 3.4344 1.7698 -3.0509
34 1 4.3611 -0.4542 -0.1624
35 1 6.6419 -0.0838 0.8861
36 1 5.4248 3.1354 -2.2164
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000275200266.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 00:44:47
Heat of formation + Delta-G solvation = -7.055041 kcal
Electronic energy + Delta-G solvation = -19082.571603 eV
Core-core repulsion = 16272.481770 eV
Total energy + Delta-G solvation = -2810.089833 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 267.103 amu
Computer time = 0.34 seconds
Orbital eigenvalues (eV)
-38.82052 -37.08147 -34.76874 -32.52852 -32.09228 -29.35250 -28.78068 -26.59737
-26.07930 -22.70662 -22.32763 -21.10347 -18.71918 -18.02576 -17.16328 -16.44358
-15.75898 -15.11894 -14.55228 -13.98409 -13.91334 -13.04417 -12.81856 -12.65468
-12.47812 -12.37188 -12.21934 -12.05538 -11.88064 -11.47369 -11.38341 -11.18961
-10.93973 -10.84064 -10.77084 -10.38379 -10.27855 -10.17593 -9.98484 -9.82466
-8.80136 -8.24920 -7.81986 -7.46774 -7.10447 -6.12440 -4.56488 1.56646
2.20924 2.50124 3.14915 3.22311 3.24799 3.30840 4.11998 4.59154
4.63950 5.31864 5.44366 5.56721 5.73141 5.74194 5.76394 5.84286
5.93728 6.00201 6.07107 6.14081 6.17847 6.24875 6.27811 6.40233
6.57178 6.66721 6.69413 6.80143 6.96068 6.97842 7.08120 7.50511
7.77927 8.23427 8.46284 9.09343 9.54586 10.66107 10.86886
Molecular weight = 267.10amu
Principal moments of inertia in cm(-1)
A = 0.015406 B = 0.008718 C = 0.006576
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1817.022225 B = 3211.039003 C = 4256.893255
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.173 4.173
2 C 0.125 3.875
3 N -0.631 5.631
4 C 0.564 3.436
5 O -0.576 6.576
6 C -0.541 4.541
7 H 0.070 0.930
8 C 0.089 3.911
9 N -0.767 5.767
10 Si 0.899 3.101
11 H -0.273 1.273
12 H -0.280 1.280
13 H -0.265 1.265
14 C 0.148 3.852
15 H 0.092 0.908
16 C -0.158 4.158
17 C -0.070 4.070
18 C -0.076 4.076
19 C -0.107 4.107
20 C -0.210 4.210
21 S 0.063 5.937
22 C -0.213 4.213
23 H 0.051 0.949
24 H 0.062 0.938
25 H 0.044 0.956
26 H 0.075 0.925
27 H 0.047 0.953
28 H 0.266 0.734
29 H 0.056 0.944
30 H 0.049 0.951
31 H 0.054 0.946
32 H 0.069 0.931
33 H 0.068 0.932
34 H 0.135 0.865
35 H 0.157 0.843
36 H 0.156 0.844
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.238 -6.546 -9.424 11.691
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.231 4.231
2 C 0.000 4.000
3 N -0.368 5.368
4 C 0.370 3.630
5 O -0.459 6.459
6 C -0.578 4.578
7 H 0.088 0.912
8 C -0.131 4.131
9 N -0.396 5.396
10 Si 0.724 3.276
11 H -0.199 1.199
12 H -0.206 1.206
13 H -0.189 1.189
14 C 0.042 3.958
15 H 0.110 0.890
16 C -0.216 4.216
17 C -0.111 4.111
18 C -0.088 4.088
19 C -0.137 4.137
20 C -0.345 4.345
21 S 0.326 5.674
22 C -0.348 4.348
23 H 0.070 0.930
24 H 0.081 0.919
25 H 0.063 0.937
26 H 0.094 0.906
27 H 0.066 0.934
28 H 0.077 0.923
29 H 0.075 0.925
30 H 0.069 0.931
31 H 0.073 0.927
32 H 0.087 0.913
33 H 0.087 0.913
34 H 0.152 0.848
35 H 0.175 0.825
36 H 0.173 0.827
Dipole moment (debyes) X Y Z Total
from point charges 3.930 -4.980 -9.044 11.047
hybrid contribution -1.608 -1.211 0.790 2.163
sum 2.321 -6.191 -8.254 10.576
Atomic orbital electron populations
1.22377 0.98037 1.00227 1.02507 1.21078 0.92981 0.85208 1.00741
1.47977 1.71050 1.12912 1.04847 1.18130 0.77024 0.85675 0.82197
1.90586 1.50433 1.18699 1.86132 1.20971 1.47291 1.00190 0.89318
0.91230 1.25696 0.92962 0.94332 1.00066 1.70026 1.32484 1.10137
1.26956 0.86508 0.79223 0.79830 0.82019 1.19868 1.20571 1.18943
1.20591 0.92284 0.98016 0.84914 0.88955 1.22269 0.98762 1.01305
0.99290 1.20780 0.91593 1.01431 0.97343 1.18758 0.96351 0.95041
0.98689 1.19982 0.95538 1.00791 0.97395 1.25391 1.00584 1.01538
1.07034 1.83882 1.21279 1.23600 1.38610 1.25214 0.98302 1.04425
1.06852 0.92971 0.91863 0.93672 0.90635 0.93419 0.92334 0.92474
0.93149 0.92689 0.91285 0.91327 0.84758 0.82537 0.82660
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -2.83 9.96 37.16 0.37 -2.46 16
2 C 0.12 2.23 5.13 -4.04 -0.02 2.21 16
3 N -0.63 -13.53 1.90 -167.76 -0.32 -13.85 16
4 C 0.56 15.54 7.61 -12.99 -0.10 15.44 16
5 O -0.58 -18.37 14.35 5.20 0.07 -18.29 16
6 C -0.54 -14.91 8.74 -35.63 -0.31 -15.22 16
7 H 0.07 1.77 6.00 -52.49 -0.31 1.45 16
8 C 0.09 2.47 5.50 -17.36 -0.10 2.37 16
9 N -0.77 -23.04 11.83 55.55 0.66 -22.39 16
10 Si 0.90 20.23 29.56 -169.99 -5.02 15.20 16
11 H -0.27 -6.04 7.11 56.52 0.40 -5.63 16
12 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16
13 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16
14 C 0.15 2.78 2.63 -67.93 -0.18 2.60 16
15 H 0.09 2.08 6.90 -51.93 -0.36 1.72 16
16 C -0.16 -2.46 8.14 37.16 0.30 -2.15 16
17 C -0.07 -1.11 4.90 -27.89 -0.14 -1.24 16
18 C -0.08 -1.35 4.83 -106.25 -0.51 -1.86 16
19 C -0.11 -1.92 9.73 -41.20 -0.40 -2.32 16
20 C -0.21 -3.64 11.23 29.04 0.33 -3.31 16
21 S 0.06 1.05 23.34 -107.50 -2.51 -1.45 16
22 C -0.21 -3.66 10.98 29.04 0.32 -3.35 16
23 H 0.05 0.80 5.44 -51.93 -0.28 0.52 16
24 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16
25 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16
26 H 0.08 1.44 6.09 -51.93 -0.32 1.12 16
27 H 0.05 0.72 6.34 -51.93 -0.33 0.40 16
28 H 0.27 7.32 8.29 -40.82 -0.34 6.98 16
29 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16
30 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16
31 H 0.05 0.77 6.17 -51.93 -0.32 0.45 16
32 H 0.07 0.99 6.46 -51.93 -0.34 0.66 16
33 H 0.07 0.92 8.12 -51.92 -0.42 0.50 16
34 H 0.13 2.31 7.93 -52.49 -0.42 1.89 16
35 H 0.16 2.36 8.06 -52.49 -0.42 1.94 16
36 H 0.16 2.35 8.06 -52.49 -0.42 1.93 16
LS Contribution 308.11 15.07 4.64 4.64
Total: -1.00 -33.23 308.11 -7.68 -40.91
By element:
Atomic # 1 Polarization: 9.29 SS G_CDS: -4.77 Total: 4.52 kcal
Atomic # 6 Polarization: -8.86 SS G_CDS: -0.44 Total: -9.30 kcal
Atomic # 7 Polarization: -36.57 SS G_CDS: 0.34 Total: -36.24 kcal
Atomic # 8 Polarization: -18.37 SS G_CDS: 0.07 Total: -18.29 kcal
Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.20 kcal
Atomic # 16 Polarization: 1.05 SS G_CDS: -2.51 Total: -1.45 kcal
Total LS contribution 4.64 Total: 4.64 kcal
Total: -33.23 -7.68 -40.91 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000275200266.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 33.855 kcal
(2) G-P(sol) polarization free energy of solvation -33.227 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.628 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.683 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.910 kcal
(6) G-S(sol) free energy of system = (1) + (5) -7.055 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.34 seconds