Wall clock time and date at job start Mon Mar 30 2020 00:44:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 109.47473 * 2 1 4 4 C 1.34780 * 119.99743 * 90.00017 * 3 2 1 5 5 O 1.21686 * 120.00024 * 180.02562 * 4 3 2 6 6 C 1.46375 * 120.00151 * 359.97438 * 4 3 2 7 7 H 1.07999 * 119.99985 * 0.02562 * 6 4 3 8 8 C 1.40051 * 120.00173 * 180.02562 * 6 4 3 9 9 N 1.30678 * 119.99721 * 0.02562 * 8 6 4 10 10 Si 1.86792 * 120.00231 * 180.02562 * 8 6 4 11 11 H 1.48499 * 109.47164 * 89.99807 * 10 8 6 12 12 H 1.48503 * 109.47244 * 209.99967 * 10 8 6 13 13 H 1.48509 * 109.46890 * 330.00014 * 10 8 6 14 14 C 1.46500 * 120.00115 * 270.00004 * 3 2 1 15 15 H 1.09001 * 109.46961 * 179.97438 * 14 3 2 16 16 C 1.53001 * 109.46971 * 59.99923 * 14 3 2 17 17 C 1.52994 * 109.47036 * 300.00026 * 14 3 2 18 18 C 1.50700 * 109.47200 * 294.99404 * 17 14 3 19 19 C 1.38429 * 122.53403 * 90.00313 * 18 17 14 20 20 C 1.33393 * 114.91570 * 179.97438 * 19 18 17 21 21 S 1.75877 * 109.59655 * 359.97438 * 20 19 18 22 22 C 1.33385 * 122.54488 * 269.71462 * 18 17 14 23 23 H 1.09002 * 109.47153 * 59.99757 * 1 2 3 24 24 H 1.09001 * 109.46832 * 299.99948 * 1 2 3 25 25 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47153 * 120.00243 * 2 1 3 27 27 H 1.08998 * 109.47533 * 239.99872 * 2 1 3 28 28 H 0.96996 * 120.00130 * 179.97438 * 9 8 6 29 29 H 1.09001 * 109.47069 * 59.99481 * 16 14 3 30 30 H 1.08996 * 109.47289 * 180.02562 * 16 14 3 31 31 H 1.09001 * 109.47158 * 299.99732 * 16 14 3 32 32 H 1.09000 * 109.47538 * 55.00161 * 17 14 3 33 33 H 1.09009 * 109.46677 * 175.00234 * 17 14 3 34 34 H 1.07992 * 122.54114 * 0.02562 * 19 18 17 35 35 H 1.08000 * 125.19523 * 179.97438 * 20 19 18 36 36 H 1.07998 * 125.19931 * 0.02562 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2430 2.0165 1.1673 5 8 2.6483 3.1639 1.1673 6 6 1.9985 1.3266 2.4349 7 1 1.6385 0.3084 2.4349 8 6 2.2314 1.9870 3.6478 9 7 2.6666 3.2191 3.6478 10 14 1.9201 1.1064 5.2655 11 1 3.1577 0.4068 5.6944 12 1 1.5270 2.0963 6.3003 13 1 0.8278 0.1160 5.0877 14 6 2.2626 2.0718 -1.2687 15 1 2.6195 3.0823 -1.0695 16 6 0.9616 2.1398 -2.0710 17 6 3.3171 1.3069 -2.0710 18 6 4.6325 1.3453 -1.3366 19 6 4.9973 0.3819 -0.4119 20 6 6.1948 0.5642 0.1468 21 16 6.9341 2.0210 -0.5047 22 6 5.5358 2.3070 -1.5325 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5139 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 2.8276 3.6766 4.4878 29 1 0.2103 2.6847 -1.4994 30 1 1.1433 2.6532 -3.0151 31 1 0.6044 1.1294 -2.2702 32 1 2.9997 0.2714 -2.1939 33 1 3.4344 1.7698 -3.0509 34 1 4.3611 -0.4542 -0.1624 35 1 6.6419 -0.0838 0.8861 36 1 5.4248 3.1354 -2.2164 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000275200266.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:47 Heat of formation + Delta-G solvation = -27.057154 kcal Electronic energy + Delta-G solvation = -19083.438959 eV Core-core repulsion = 16272.481770 eV Total energy + Delta-G solvation = -2810.957189 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.40310 -38.67620 -36.59978 -34.57828 -33.61473 -30.71056 -30.37392 -28.14593 -27.87726 -24.07352 -23.82577 -22.80731 -20.36220 -19.42451 -18.58273 -18.23937 -17.69820 -16.69796 -16.18395 -15.64317 -15.44422 -14.46533 -14.37498 -14.25502 -14.04739 -13.77276 -13.58947 -13.53893 -13.25637 -13.19918 -13.00271 -12.70063 -12.56888 -12.39845 -12.27427 -12.12475 -11.92995 -11.65270 -11.44275 -11.34648 -10.87928 -9.64520 -9.58798 -9.19327 -8.84283 -8.20128 -6.72029 0.20947 0.88302 1.15882 1.37892 1.38911 1.52776 1.93727 2.25183 2.57334 2.97042 3.76178 4.00852 4.15448 4.24758 4.37640 4.44076 4.45070 4.64261 4.68249 4.77590 4.81336 4.82939 4.92030 4.99204 5.08764 5.17159 5.24829 5.30910 5.41997 5.43373 5.62770 5.63624 5.73146 5.95794 6.27200 6.64323 6.97612 7.61357 8.61188 8.81854 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.015406 B = 0.008718 C = 0.006576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1817.022225 B = 3211.039003 C = 4256.893255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.120 3.880 3 N -0.626 5.626 4 C 0.554 3.446 5 O -0.633 6.633 6 C -0.562 4.562 7 H 0.087 0.913 8 C 0.031 3.969 9 N -0.823 5.823 10 Si 0.981 3.019 11 H -0.264 1.264 12 H -0.278 1.278 13 H -0.248 1.248 14 C 0.144 3.856 15 H 0.046 0.954 16 C -0.148 4.148 17 C -0.061 4.061 18 C -0.093 4.093 19 C -0.124 4.124 20 C -0.225 4.225 21 S 0.069 5.931 22 C -0.228 4.228 23 H 0.063 0.937 24 H 0.029 0.971 25 H 0.078 0.922 26 H 0.061 0.939 27 H 0.085 0.915 28 H 0.268 0.732 29 H 0.032 0.968 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.091 0.909 33 H 0.097 0.903 34 H 0.140 0.860 35 H 0.173 0.827 36 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.407 -8.926 -10.385 13.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.003 4.003 3 N -0.361 5.361 4 C 0.359 3.641 5 O -0.520 6.520 6 C -0.599 4.599 7 H 0.105 0.895 8 C -0.183 4.183 9 N -0.454 5.454 10 Si 0.801 3.199 11 H -0.189 1.189 12 H -0.203 1.203 13 H -0.171 1.171 14 C 0.039 3.961 15 H 0.064 0.936 16 C -0.206 4.206 17 C -0.101 4.101 18 C -0.105 4.105 19 C -0.154 4.154 20 C -0.360 4.360 21 S 0.332 5.668 22 C -0.363 4.363 23 H 0.082 0.918 24 H 0.048 0.952 25 H 0.097 0.903 26 H 0.080 0.920 27 H 0.103 0.897 28 H 0.078 0.922 29 H 0.052 0.948 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.109 0.891 33 H 0.116 0.884 34 H 0.158 0.842 35 H 0.191 0.809 36 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 3.079 -7.412 -10.059 12.869 hybrid contribution -1.331 -0.468 1.000 1.729 sum 1.747 -7.880 -9.059 12.133 Atomic orbital electron populations 1.22293 0.96602 1.02063 1.01418 1.21299 0.94081 0.83076 1.01886 1.47755 1.69927 1.14129 1.04326 1.18371 0.76496 0.85132 0.84123 1.90541 1.52843 1.21102 1.87491 1.21455 1.47315 1.01048 0.90057 0.89527 1.26842 0.92039 0.94911 1.04512 1.70217 1.34484 1.12466 1.28192 0.85264 0.79725 0.78605 0.76268 1.18909 1.20296 1.17134 1.20730 0.94956 0.95913 0.84531 0.93611 1.22166 0.96075 1.02839 0.99484 1.20756 0.89340 1.02396 0.97625 1.19070 0.97326 0.95073 0.99027 1.20202 0.95956 1.01353 0.97892 1.25744 1.00846 1.01989 1.07387 1.83794 1.21149 1.23392 1.38452 1.25573 0.98543 1.04913 1.07271 0.91802 0.95215 0.90338 0.92018 0.89703 0.92204 0.94838 0.90268 0.90239 0.89066 0.88444 0.84236 0.80910 0.81122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.99 9.96 71.98 0.72 -4.27 16 2 C 0.12 4.01 5.13 86.38 0.44 4.45 16 3 N -0.63 -26.63 1.90 -802.90 -1.53 -28.16 16 4 C 0.55 31.31 7.61 86.36 0.66 31.97 16 5 O -0.63 -42.28 14.35 -4.30 -0.06 -42.34 16 6 C -0.56 -31.40 8.74 24.83 0.22 -31.19 16 7 H 0.09 4.37 6.00 -2.91 -0.02 4.35 16 8 C 0.03 1.77 5.50 85.30 0.47 2.23 16 9 N -0.82 -51.29 11.83 21.84 0.26 -51.03 16 10 Si 0.98 41.75 29.56 68.60 2.03 43.78 16 11 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 12 H -0.28 -11.59 7.11 99.48 0.71 -10.88 16 13 H -0.25 -9.76 7.11 99.48 0.71 -9.05 16 14 C 0.14 5.28 2.63 44.99 0.12 5.40 16 15 H 0.05 2.12 6.90 -2.39 -0.02 2.11 16 16 C -0.15 -4.24 8.14 71.98 0.59 -3.66 16 17 C -0.06 -1.76 4.90 29.85 0.15 -1.61 16 18 C -0.09 -3.19 4.83 -20.92 -0.10 -3.29 16 19 C -0.12 -4.36 9.73 21.22 0.21 -4.15 16 20 C -0.22 -7.70 11.23 66.72 0.75 -6.95 16 21 S 0.07 2.29 23.34 -56.49 -1.32 0.97 16 22 C -0.23 -7.76 10.98 66.72 0.73 -7.03 16 23 H 0.06 1.76 5.44 -2.39 -0.01 1.75 16 24 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 25 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 26 H 0.06 2.25 6.09 -2.39 -0.01 2.23 16 27 H 0.08 2.23 6.34 -2.39 -0.02 2.21 16 28 H 0.27 15.34 8.29 -92.71 -0.77 14.58 16 29 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.08 1.90 6.17 -2.39 -0.01 1.88 16 32 H 0.09 2.24 6.46 -2.39 -0.02 2.22 16 33 H 0.10 2.28 8.12 -2.38 -0.02 2.26 16 34 H 0.14 4.63 7.93 -2.91 -0.02 4.61 16 35 H 0.17 5.12 8.06 -2.91 -0.02 5.10 16 36 H 0.17 5.07 8.06 -2.91 -0.02 5.05 16 Total: -1.00 -76.15 308.11 5.40 -70.75 By element: Atomic # 1 Polarization: 23.05 SS G_CDS: 1.08 Total: 24.13 kcal Atomic # 6 Polarization: -23.04 SS G_CDS: 4.94 Total: -18.10 kcal Atomic # 7 Polarization: -77.92 SS G_CDS: -1.27 Total: -79.18 kcal Atomic # 8 Polarization: -42.28 SS G_CDS: -0.06 Total: -42.34 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 2.03 Total: 43.78 kcal Atomic # 16 Polarization: 2.29 SS G_CDS: -1.32 Total: 0.97 kcal Total: -76.15 5.40 -70.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275200266.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.689 kcal (2) G-P(sol) polarization free energy of solvation -76.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds