Wall clock time and date at job start Mon Mar 30 2020 00:31:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47558 * 2 1 4 4 C 1.50693 * 109.47475 * 239.99370 * 2 1 3 5 5 H 1.08007 * 120.00516 * 240.00296 * 4 2 1 6 6 C 1.37883 * 120.00159 * 60.00254 * 4 2 1 7 7 N 1.31510 * 119.99389 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 120.00113 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47152 * 60.00219 * 8 6 4 10 10 H 1.48507 * 109.46967 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.47408 * 299.99809 * 8 6 4 12 12 N 1.46499 * 109.46879 * 119.99495 * 2 1 3 13 13 C 1.34779 * 120.00262 * 274.99962 * 12 2 1 14 14 O 1.21548 * 119.99885 * 0.02562 * 13 12 2 15 15 C 1.47849 * 120.00130 * 179.97438 * 13 12 2 16 16 C 1.39595 * 120.13039 * 179.97438 * 15 13 12 17 17 C 1.37951 * 119.90504 * 179.72344 * 16 15 13 18 18 C 1.38341 * 120.16922 * 0.24093 * 17 16 15 19 19 C 1.50701 * 119.86250 * 180.02562 * 18 17 16 20 20 O 1.42904 * 109.47314 * 359.97438 * 19 18 17 21 21 C 1.38550 * 120.27370 * 0.03465 * 18 17 16 22 22 F 1.35094 * 119.95453 * 179.97438 * 21 18 17 23 23 C 1.38215 * 120.08932 * 359.96388 * 21 18 17 24 24 H 1.08995 * 109.47246 * 300.00890 * 1 2 3 25 25 H 1.09005 * 109.46402 * 60.00798 * 1 2 3 26 26 H 1.08997 * 109.47134 * 179.97438 * 1 2 3 27 27 H 0.97002 * 119.99801 * 179.97438 * 7 6 4 28 28 H 0.97007 * 120.00065 * 95.00019 * 12 2 1 29 29 H 1.08002 * 120.05098 * 0.02562 * 16 15 13 30 30 H 1.07993 * 119.91603 * 180.25266 * 17 16 15 31 31 H 1.09006 * 109.47292 * 119.99965 * 19 18 17 32 32 H 1.09004 * 109.47247 * 239.99730 * 19 18 17 33 33 H 0.96694 * 113.99764 * 180.02562 * 20 19 18 34 34 H 1.08001 * 120.08501 * 180.02562 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.6533 -1.5887 -1.1312 6 6 1.6994 -0.2396 -2.4827 7 7 0.9437 0.8300 -2.6034 8 14 2.3227 -1.1199 -4.0077 9 1 1.8283 -2.5202 -4.0079 10 1 1.8272 -0.4203 -5.2204 11 1 3.8077 -1.1193 -4.0075 12 7 2.0183 -0.6905 1.1962 13 6 2.1470 -0.0181 2.3572 14 8 1.8575 1.1612 2.4118 15 6 2.6392 -0.7151 3.5646 16 6 2.7741 -0.0212 4.7683 17 6 3.2284 -0.6775 5.8934 18 6 3.5553 -2.0203 5.8305 19 6 4.0503 -2.7306 7.0640 20 8 4.0944 -1.8117 8.1575 21 6 3.4296 -2.7147 4.6382 22 9 3.7512 -4.0257 4.5840 23 6 2.9755 -2.0680 3.5042 24 1 -0.3633 0.5139 0.8899 25 1 -0.3632 0.5138 -0.8901 26 1 -0.3633 -1.0276 -0.0005 27 1 0.7098 1.1615 -3.4845 28 1 2.2489 -1.6317 1.1528 29 1 2.5185 1.0269 4.8199 30 1 3.3289 -0.1418 6.8257 31 1 3.3755 -3.5517 7.3059 32 1 5.0501 -3.1241 6.8801 33 1 4.4051 -2.2012 8.9862 34 1 2.8772 -2.6094 2.5749 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000278908973.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:31:36 Heat of formation + Delta-G solvation = -111.624364 kcal Electronic energy + Delta-G solvation = -19564.929900 eV Core-core repulsion = 16184.092425 eV Total energy + Delta-G solvation = -3380.837475 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.03524 -39.84375 -38.30976 -36.76510 -34.87191 -32.68832 -31.79074 -30.61430 -28.92338 -26.57831 -25.27360 -22.89400 -22.75257 -20.93429 -19.61220 -18.38699 -17.71002 -16.55055 -16.11524 -16.06663 -16.02200 -15.24929 -15.15019 -14.93232 -14.30774 -14.20002 -14.11468 -13.45898 -13.11589 -12.62766 -12.39797 -12.16122 -11.70224 -11.47804 -11.45287 -11.12120 -10.97907 -10.78940 -10.64706 -10.35346 -10.25274 -9.25038 -9.09172 -9.02596 -8.72015 -8.57621 -7.97603 -6.14340 -4.24082 0.73481 1.12278 3.06368 3.25076 3.30262 3.31461 3.70325 3.89321 4.00666 4.14451 4.34673 4.56132 4.73249 4.88878 5.06602 5.14472 5.17470 5.18661 5.47809 5.66888 5.89047 5.99617 6.18271 6.35167 6.73130 6.80637 6.93631 7.11348 7.22640 7.38074 7.51368 7.65969 7.87791 8.11604 8.57506 8.73028 9.00943 9.43180 10.91689 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.032471 B = 0.004116 C = 0.003763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.098239 B = 6801.839522 C = 7438.660354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.264 3.736 3 H 0.051 0.949 4 C -0.537 4.537 5 H 0.061 0.939 6 C 0.067 3.933 7 N -0.883 5.883 8 Si 0.903 3.097 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.276 1.276 12 N -0.699 5.699 13 C 0.541 3.459 14 O -0.545 6.545 15 C -0.091 4.091 16 C -0.076 4.076 17 C -0.078 4.078 18 C -0.116 4.116 19 C 0.121 3.879 20 O -0.567 6.567 21 C 0.094 3.906 22 F -0.138 7.138 23 C -0.122 4.122 24 H 0.016 0.984 25 H 0.092 0.908 26 H 0.027 0.973 27 H 0.266 0.734 28 H 0.388 0.612 29 H 0.144 0.856 30 H 0.146 0.854 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.385 0.615 34 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.384 -8.181 17.568 20.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.162 3.838 3 H 0.069 0.931 4 C -0.575 4.575 5 H 0.079 0.921 6 C -0.136 4.136 7 N -0.520 5.520 8 Si 0.730 3.270 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.201 1.201 12 N -0.347 5.347 13 C 0.326 3.674 14 O -0.425 6.425 15 C -0.094 4.094 16 C -0.095 4.095 17 C -0.096 4.096 18 C -0.117 4.117 19 C 0.044 3.956 20 O -0.373 6.373 21 C 0.074 3.926 22 F -0.117 7.117 23 C -0.142 4.142 24 H 0.035 0.965 25 H 0.110 0.890 26 H 0.046 0.954 27 H 0.076 0.924 28 H 0.222 0.778 29 H 0.162 0.838 30 H 0.164 0.836 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.232 0.768 34 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 4.860 -6.849 16.926 18.895 hybrid contribution 0.677 -1.680 -0.561 1.896 sum 5.537 -8.529 16.366 19.268 Atomic orbital electron populations 1.22086 0.98235 0.99253 1.01058 1.18815 0.91181 0.94081 0.79698 0.93078 1.21169 1.32695 1.13350 0.90294 0.92078 1.24882 0.94741 0.94937 0.99058 1.69890 1.35713 1.22344 1.24073 0.86488 0.79197 0.79584 0.81718 1.20127 1.21087 1.20130 1.46538 1.64147 1.13589 1.10401 1.18112 0.79207 0.86825 0.83240 1.90739 1.51357 1.15422 1.84956 1.20242 1.00472 0.93045 0.95681 1.21433 0.96109 1.01160 0.90797 1.20850 0.96912 0.92735 0.99078 1.19824 1.03090 0.95584 0.93251 1.20740 0.99854 0.90429 0.84626 1.86430 1.90266 1.39438 1.21134 1.17177 1.02922 0.78364 0.94093 1.91489 1.90567 1.32515 1.97085 1.21318 1.00080 0.94768 0.98027 0.96517 0.88990 0.95378 0.92447 0.77795 0.83816 0.83635 0.91810 0.91808 0.76774 0.83869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.69 9.26 37.16 0.34 -3.34 16 2 C 0.26 6.74 2.56 -69.09 -0.18 6.56 16 3 H 0.05 1.50 7.58 -51.93 -0.39 1.10 16 4 C -0.54 -14.22 8.73 -34.44 -0.30 -14.52 16 5 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 6 C 0.07 1.81 5.30 -17.82 -0.09 1.71 16 7 N -0.88 -24.82 11.32 55.43 0.63 -24.19 16 8 Si 0.90 20.59 29.54 -169.99 -5.02 15.57 16 9 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 10 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 12 N -0.70 -14.80 5.02 -55.88 -0.28 -15.08 16 13 C 0.54 11.15 7.74 -12.33 -0.10 11.06 16 14 O -0.55 -13.14 16.01 5.32 0.09 -13.06 16 15 C -0.09 -1.48 5.87 -104.98 -0.62 -2.10 16 16 C -0.08 -1.10 9.59 -39.18 -0.38 -1.48 16 17 C -0.08 -0.96 9.36 -39.65 -0.37 -1.33 16 18 C -0.12 -1.38 5.89 -104.47 -0.62 -1.99 16 19 C 0.12 1.05 7.00 36.01 0.25 1.30 16 20 O -0.57 -4.53 12.12 -35.23 -0.43 -4.96 16 21 C 0.09 1.20 7.24 -39.47 -0.29 0.92 16 22 F -0.14 -1.71 16.79 2.25 0.04 -1.67 16 23 C -0.12 -1.73 9.52 -39.11 -0.37 -2.10 16 24 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.09 2.48 6.07 -51.93 -0.32 2.16 16 26 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 28 H 0.39 7.10 6.57 -40.82 -0.27 6.83 16 29 H 0.14 2.07 7.65 -52.49 -0.40 1.67 16 30 H 0.15 1.59 6.99 -52.49 -0.37 1.23 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.38 1.15 9.12 45.56 0.42 1.56 16 34 H 0.14 1.85 6.40 -52.49 -0.34 1.51 16 LS Contribution 299.18 15.07 4.51 4.51 Total: -1.00 -31.55 299.18 -6.07 -37.62 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -2.90 Total: 6.57 kcal Atomic # 6 Polarization: -2.60 SS G_CDS: -2.71 Total: -5.31 kcal Atomic # 7 Polarization: -39.62 SS G_CDS: 0.35 Total: -39.27 kcal Atomic # 8 Polarization: -17.68 SS G_CDS: -0.34 Total: -18.02 kcal Atomic # 9 Polarization: -1.71 SS G_CDS: 0.04 Total: -1.67 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -31.55 -6.07 -37.62 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278908973.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.004 kcal (2) G-P(sol) polarization free energy of solvation -31.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds