Wall clock time and date at job start Mon Mar 30 2020 00:31:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47558 * 2 1 4 4 C 1.50693 * 109.47475 * 239.99370 * 2 1 3 5 5 H 1.08007 * 120.00516 * 240.00296 * 4 2 1 6 6 C 1.37883 * 120.00159 * 60.00254 * 4 2 1 7 7 N 1.31510 * 119.99389 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 120.00113 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47152 * 60.00219 * 8 6 4 10 10 H 1.48507 * 109.46967 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.47408 * 299.99809 * 8 6 4 12 12 N 1.46499 * 109.46879 * 119.99495 * 2 1 3 13 13 C 1.34779 * 120.00262 * 274.99962 * 12 2 1 14 14 O 1.21548 * 119.99885 * 0.02562 * 13 12 2 15 15 C 1.47849 * 120.00130 * 179.97438 * 13 12 2 16 16 C 1.39595 * 120.13039 * 179.97438 * 15 13 12 17 17 C 1.37951 * 119.90504 * 179.72344 * 16 15 13 18 18 C 1.38341 * 120.16922 * 0.24093 * 17 16 15 19 19 C 1.50701 * 119.86250 * 180.02562 * 18 17 16 20 20 O 1.42904 * 109.47314 * 359.97438 * 19 18 17 21 21 C 1.38550 * 120.27370 * 0.03465 * 18 17 16 22 22 F 1.35094 * 119.95453 * 179.97438 * 21 18 17 23 23 C 1.38215 * 120.08932 * 359.96388 * 21 18 17 24 24 H 1.08995 * 109.47246 * 300.00890 * 1 2 3 25 25 H 1.09005 * 109.46402 * 60.00798 * 1 2 3 26 26 H 1.08997 * 109.47134 * 179.97438 * 1 2 3 27 27 H 0.97002 * 119.99801 * 179.97438 * 7 6 4 28 28 H 0.97007 * 120.00065 * 95.00019 * 12 2 1 29 29 H 1.08002 * 120.05098 * 0.02562 * 16 15 13 30 30 H 1.07993 * 119.91603 * 180.25266 * 17 16 15 31 31 H 1.09006 * 109.47292 * 119.99965 * 19 18 17 32 32 H 1.09004 * 109.47247 * 239.99730 * 19 18 17 33 33 H 0.96694 * 113.99764 * 180.02562 * 20 19 18 34 34 H 1.08001 * 120.08501 * 180.02562 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.6533 -1.5887 -1.1312 6 6 1.6994 -0.2396 -2.4827 7 7 0.9437 0.8300 -2.6034 8 14 2.3227 -1.1199 -4.0077 9 1 1.8283 -2.5202 -4.0079 10 1 1.8272 -0.4203 -5.2204 11 1 3.8077 -1.1193 -4.0075 12 7 2.0183 -0.6905 1.1962 13 6 2.1470 -0.0181 2.3572 14 8 1.8575 1.1612 2.4118 15 6 2.6392 -0.7151 3.5646 16 6 2.7741 -0.0212 4.7683 17 6 3.2284 -0.6775 5.8934 18 6 3.5553 -2.0203 5.8305 19 6 4.0503 -2.7306 7.0640 20 8 4.0944 -1.8117 8.1575 21 6 3.4296 -2.7147 4.6382 22 9 3.7512 -4.0257 4.5840 23 6 2.9755 -2.0680 3.5042 24 1 -0.3633 0.5139 0.8899 25 1 -0.3632 0.5138 -0.8901 26 1 -0.3633 -1.0276 -0.0005 27 1 0.7098 1.1615 -3.4845 28 1 2.2489 -1.6317 1.1528 29 1 2.5185 1.0269 4.8199 30 1 3.3289 -0.1418 6.8257 31 1 3.3755 -3.5517 7.3059 32 1 5.0501 -3.1241 6.8801 33 1 4.4051 -2.2012 8.9862 34 1 2.8772 -2.6094 2.5749 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000278908973.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:31:36 Heat of formation + Delta-G solvation = -134.418343 kcal Electronic energy + Delta-G solvation = -19565.918321 eV Core-core repulsion = 16184.092425 eV Total energy + Delta-G solvation = -3381.825896 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -50.02273 -41.21931 -39.58965 -37.52966 -36.78020 -34.49807 -33.03648 -31.72285 -30.71593 -27.62998 -27.33293 -24.13607 -23.92308 -22.47269 -21.27623 -19.81634 -18.53956 -18.06031 -17.53594 -17.11739 -16.96184 -16.93619 -16.41264 -16.02388 -15.82182 -15.60977 -15.25198 -14.82501 -14.44701 -14.28825 -13.79939 -13.55116 -13.24331 -13.00851 -12.86131 -12.75198 -12.54908 -12.31460 -12.28254 -12.16231 -11.29633 -11.15476 -10.95709 -10.61254 -10.10195 -9.90946 -9.67232 -8.19196 -6.37298 -0.40889 0.06592 1.45031 1.47208 1.55048 1.74953 2.27750 2.49570 2.65252 2.94613 3.11374 3.18691 3.57429 3.79712 3.89120 4.06408 4.21047 4.42483 4.47913 4.60944 4.72543 4.83545 4.89783 4.96885 5.05246 5.16891 5.24352 5.39837 5.54168 5.63852 5.69856 5.85872 6.05946 6.68393 6.83205 6.90998 7.26290 7.41799 8.87195 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.032471 B = 0.004116 C = 0.003763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.098239 B = 6801.839522 C = 7438.660354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.269 3.731 3 H 0.003 0.997 4 C -0.551 4.551 5 H 0.074 0.926 6 C 0.016 3.984 7 N -0.917 5.917 8 Si 0.974 3.026 9 H -0.263 1.263 10 H -0.285 1.285 11 H -0.271 1.271 12 N -0.696 5.696 13 C 0.541 3.459 14 O -0.590 6.590 15 C -0.114 4.114 16 C -0.078 4.078 17 C -0.073 4.073 18 C -0.104 4.104 19 C 0.122 3.878 20 O -0.581 6.581 21 C 0.093 3.907 22 F -0.132 7.132 23 C -0.118 4.118 24 H 0.013 0.987 25 H 0.070 0.930 26 H 0.041 0.959 27 H 0.267 0.733 28 H 0.404 0.596 29 H 0.137 0.863 30 H 0.164 0.836 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.407 0.593 34 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.599 -10.660 18.929 22.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.166 3.834 3 H 0.021 0.979 4 C -0.589 4.589 5 H 0.092 0.908 6 C -0.184 4.184 7 N -0.555 5.555 8 Si 0.798 3.202 9 H -0.188 1.188 10 H -0.211 1.211 11 H -0.196 1.196 12 N -0.345 5.345 13 C 0.328 3.672 14 O -0.473 6.473 15 C -0.117 4.117 16 C -0.097 4.097 17 C -0.091 4.091 18 C -0.105 4.105 19 C 0.044 3.956 20 O -0.391 6.391 21 C 0.074 3.926 22 F -0.110 7.110 23 C -0.138 4.138 24 H 0.032 0.968 25 H 0.088 0.912 26 H 0.060 0.940 27 H 0.076 0.924 28 H 0.240 0.760 29 H 0.155 0.845 30 H 0.181 0.819 31 H 0.100 0.900 32 H 0.099 0.901 33 H 0.259 0.741 34 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 6.096 -9.376 18.332 21.474 hybrid contribution 0.336 -0.916 -0.831 1.282 sum 6.432 -10.292 17.501 21.298 Atomic orbital electron populations 1.21912 0.98023 0.99627 0.99792 1.18434 0.91341 0.92090 0.81518 0.97935 1.21502 1.32938 1.13761 0.90739 0.90806 1.25804 0.94761 0.95553 1.02317 1.70041 1.36805 1.23813 1.24803 0.85370 0.78651 0.78714 0.77444 1.18803 1.21077 1.19560 1.46264 1.64390 1.14224 1.09615 1.18729 0.77962 0.86391 0.84081 1.90703 1.53265 1.17504 1.85781 1.19786 1.03713 0.94026 0.94206 1.21475 0.96185 1.01032 0.91021 1.20979 0.96246 0.93105 0.98747 1.20265 1.00621 0.95300 0.94314 1.20798 1.00956 0.90266 0.83548 1.86368 1.90592 1.39961 1.22169 1.17110 1.02879 0.78628 0.93972 1.91510 1.90463 1.31990 1.97052 1.21337 0.99538 0.93810 0.99112 0.96793 0.91170 0.93984 0.92418 0.75994 0.84529 0.81882 0.90045 0.90099 0.74122 0.83044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.94 9.26 71.98 0.67 -6.27 16 2 C 0.27 14.23 2.56 44.24 0.11 14.34 16 3 H 0.00 0.17 7.58 -2.39 -0.02 0.15 16 4 C -0.55 -29.42 8.73 25.60 0.22 -29.19 16 5 H 0.07 3.66 7.74 -2.91 -0.02 3.63 16 6 C 0.02 0.86 5.30 84.66 0.45 1.31 16 7 N -0.92 -52.72 11.32 21.45 0.24 -52.47 16 8 Si 0.97 41.96 29.54 68.60 2.03 43.99 16 9 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 10 H -0.29 -12.19 7.11 99.48 0.71 -11.48 16 11 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 12 N -0.70 -30.09 5.02 -448.99 -2.25 -32.34 16 13 C 0.54 22.99 7.74 86.79 0.67 23.67 16 14 O -0.59 -29.93 16.01 -3.87 -0.06 -29.99 16 15 C -0.11 -3.70 5.87 -20.09 -0.12 -3.82 16 16 C -0.08 -2.23 9.59 22.53 0.22 -2.01 16 17 C -0.07 -1.65 9.36 22.23 0.21 -1.44 16 18 C -0.10 -2.15 5.89 -19.76 -0.12 -2.26 16 19 C 0.12 1.62 7.00 71.24 0.50 2.12 16 20 O -0.58 -7.06 12.12 -148.98 -1.81 -8.87 16 21 C 0.09 2.16 7.24 22.34 0.16 2.32 16 22 F -0.13 -2.85 16.79 44.97 0.75 -2.09 16 23 C -0.12 -3.18 9.52 22.58 0.21 -2.97 16 24 H 0.01 0.67 8.14 -2.39 -0.02 0.65 16 25 H 0.07 3.92 6.07 -2.38 -0.01 3.91 16 26 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 27 H 0.27 14.50 8.31 -92.71 -0.77 13.73 16 28 H 0.40 14.69 6.57 -92.70 -0.61 14.08 16 29 H 0.14 4.03 7.65 -2.91 -0.02 4.01 16 30 H 0.16 3.13 6.99 -2.91 -0.02 3.11 16 31 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 32 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.41 0.83 9.12 -74.06 -0.68 0.15 16 34 H 0.15 3.69 6.40 -2.91 -0.02 3.67 16 Total: -1.00 -69.38 299.18 1.96 -67.41 By element: Atomic # 1 Polarization: 18.70 SS G_CDS: -0.13 Total: 18.57 kcal Atomic # 6 Polarization: -7.39 SS G_CDS: 3.19 Total: -4.20 kcal Atomic # 7 Polarization: -82.80 SS G_CDS: -2.01 Total: -84.81 kcal Atomic # 8 Polarization: -36.99 SS G_CDS: -1.87 Total: -38.86 kcal Atomic # 9 Polarization: -2.85 SS G_CDS: 0.75 Total: -2.09 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 2.03 Total: 43.99 kcal Total: -69.38 1.96 -67.41 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278908973.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.005 kcal (2) G-P(sol) polarization free energy of solvation -69.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds