Wall clock time and date at job start Mon Mar 30 2020 00:44:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46496 * 109.47290 * 2 1 4 4 C 1.36872 * 120.00159 * 278.28281 * 3 2 1 5 5 H 1.08000 * 119.99838 * 178.64199 * 4 3 2 6 6 C 1.39048 * 119.99942 * 358.64881 * 4 3 2 7 7 N 1.31361 * 119.99969 * 12.69256 * 6 4 3 8 8 Si 1.86797 * 120.00009 * 192.69617 * 6 4 3 9 9 H 1.48493 * 109.47375 * 89.99503 * 8 6 4 10 10 H 1.48495 * 109.47374 * 209.99929 * 8 6 4 11 11 H 1.48502 * 109.47037 * 329.99752 * 8 6 4 12 12 C 1.34784 * 119.99815 * 98.28569 * 3 2 1 13 13 O 1.21591 * 119.99573 * 186.00684 * 12 3 2 14 14 C 1.47728 * 120.00051 * 6.00412 * 12 3 2 15 15 C 1.39665 * 120.13974 * 315.29246 * 14 12 3 16 16 C 1.37930 * 119.89995 * 180.02562 * 15 14 12 17 17 C 1.38354 * 120.17736 * 359.74697 * 16 15 14 18 18 C 1.50702 * 119.85914 * 180.25520 * 17 16 15 19 19 O 1.42902 * 109.47167 * 0.25318 * 18 17 16 20 20 C 1.38566 * 120.28109 * 0.50773 * 17 16 15 21 21 F 1.35102 * 119.95098 * 179.76353 * 20 17 16 22 22 C 1.38187 * 120.09930 * 359.49660 * 20 17 16 23 23 H 1.09000 * 109.46826 * 71.29341 * 1 2 3 24 24 H 1.09000 * 109.47175 * 191.29251 * 1 2 3 25 25 H 1.09001 * 109.47043 * 311.29009 * 1 2 3 26 26 H 1.08999 * 109.46893 * 239.99820 * 2 1 3 27 27 H 1.09004 * 109.47402 * 120.00240 * 2 1 3 28 28 H 0.97001 * 119.99733 * 180.02562 * 7 6 4 29 29 H 1.08006 * 120.05046 * 0.04521 * 15 14 12 30 30 H 1.08004 * 119.90756 * 179.97438 * 16 15 14 31 31 H 1.08996 * 109.47085 * 120.25214 * 18 17 16 32 32 H 1.08996 * 109.46958 * 240.25470 * 18 17 16 33 33 H 0.96692 * 114.00123 * 179.97438 * 19 18 17 34 34 H 1.08004 * 120.09100 * 180.23331 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.0855 2.0833 -1.1730 5 1 2.4248 3.1087 -1.1698 6 6 1.7168 1.4766 -2.3685 7 7 1.0746 0.3308 -2.3529 8 14 2.1348 2.2909 -3.9969 9 1 3.4664 1.8221 -4.4574 10 1 1.1073 1.9330 -5.0075 11 1 2.1629 3.7651 -3.8203 12 6 2.4016 1.9604 1.1551 13 8 2.7028 3.1383 1.1738 14 6 2.4556 1.1643 2.3983 15 6 1.4095 0.2974 2.7219 16 6 1.4647 -0.4432 3.8842 17 6 2.5560 -0.3334 4.7276 18 6 2.6116 -1.1502 5.9928 19 8 1.4351 -1.9554 6.0921 20 6 3.5955 0.5283 4.4165 21 9 4.6557 0.6339 5.2472 22 6 3.5521 1.2758 3.2550 23 1 -0.3633 0.3296 -0.9734 24 1 -0.3633 -1.0078 0.2012 25 1 -0.3633 0.6781 0.7722 26 1 1.8933 -0.5139 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 0.8178 -0.0926 -3.1869 29 1 0.5586 0.2067 2.0628 30 1 0.6556 -1.1134 4.1347 31 1 3.4913 -1.7934 5.9716 32 1 2.6694 -0.4837 6.8533 33 1 1.4032 -2.5091 6.8841 34 1 4.3642 1.9446 3.0108 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279207992.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:57 Heat of formation + Delta-G solvation = -74.774613 kcal Electronic energy + Delta-G solvation = -20392.004421 eV Core-core repulsion = 17012.764871 eV Total energy + Delta-G solvation = -3379.239550 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -48.72322 -39.62632 -37.97605 -36.47543 -35.26298 -32.20559 -31.22246 -30.36675 -29.36784 -26.75169 -24.80442 -22.50420 -22.28342 -21.69541 -19.61447 -17.59436 -17.37867 -16.76308 -15.98885 -15.72125 -15.63283 -15.37807 -14.67498 -14.58902 -14.13246 -13.80326 -13.71299 -13.35253 -12.99983 -12.51175 -12.21506 -12.05997 -11.64687 -11.33814 -11.16786 -11.04094 -10.82527 -10.76510 -10.46354 -10.35105 -10.19309 -9.97841 -8.94002 -8.68028 -8.51265 -8.20629 -7.87127 -6.34777 -3.88738 1.22310 1.52711 3.09321 3.19713 3.24893 3.55197 3.95610 4.00312 4.16845 4.44585 4.73428 4.94709 5.02863 5.11953 5.27307 5.31004 5.44939 5.61073 5.72123 6.09241 6.21860 6.32488 6.36796 6.49345 6.63409 6.67850 6.76417 6.79546 7.14525 7.29328 7.45130 7.51946 7.75450 7.96857 8.42126 9.06439 9.31097 9.87119 10.51736 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.031548 B = 0.005299 C = 0.004735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.316502 B = 5282.454060 C = 5912.612353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.102 3.898 3 N -0.423 5.423 4 C -0.291 4.291 5 H 0.108 0.892 6 C 0.024 3.976 7 N -0.868 5.868 8 Si 0.934 3.066 9 H -0.277 1.277 10 H -0.283 1.283 11 H -0.269 1.269 12 C 0.463 3.537 13 O -0.592 6.592 14 C -0.058 4.058 15 C -0.120 4.120 16 C -0.077 4.077 17 C -0.134 4.134 18 C 0.125 3.875 19 O -0.566 6.566 20 C 0.091 3.909 21 F -0.144 7.144 22 C -0.117 4.117 23 H 0.100 0.900 24 H 0.037 0.963 25 H 0.026 0.974 26 H 0.119 0.881 27 H 0.041 0.959 28 H 0.268 0.732 29 H 0.150 0.850 30 H 0.140 0.860 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.381 0.619 34 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.303 -7.180 11.012 13.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.021 4.021 3 N -0.139 5.139 4 C -0.418 4.418 5 H 0.126 0.874 6 C -0.178 4.178 7 N -0.509 5.509 8 Si 0.761 3.239 9 H -0.203 1.203 10 H -0.208 1.208 11 H -0.193 1.193 12 C 0.253 3.747 13 O -0.479 6.479 14 C -0.061 4.061 15 C -0.139 4.139 16 C -0.095 4.095 17 C -0.135 4.135 18 C 0.048 3.952 19 O -0.372 6.372 20 C 0.072 3.928 21 F -0.122 7.122 22 C -0.137 4.137 23 H 0.119 0.881 24 H 0.056 0.944 25 H 0.045 0.955 26 H 0.136 0.864 27 H 0.059 0.941 28 H 0.079 0.921 29 H 0.167 0.833 30 H 0.158 0.842 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.229 0.771 34 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 0.263 -6.436 10.263 12.117 hybrid contribution 0.475 -0.049 -0.038 0.479 sum 0.737 -6.485 10.224 12.130 Atomic orbital electron populations 1.22361 0.96559 0.98478 1.03564 1.22121 0.94804 0.83245 1.01920 1.43812 1.52181 1.12142 1.05762 1.19918 1.40694 0.98449 0.82770 0.87414 1.25347 0.95943 0.96568 0.99946 1.70061 1.36178 1.17371 1.27249 0.85785 0.78236 0.79579 0.80346 1.20250 1.20823 1.19344 1.17696 0.86806 0.87315 0.82926 1.90621 1.56348 1.15602 1.85298 1.20142 0.93935 0.96039 0.96016 1.22141 0.99654 0.95077 0.97002 1.20763 0.97210 0.98779 0.92725 1.19662 0.95678 0.99760 0.98445 1.20685 0.87536 0.92395 0.94602 1.86451 1.42192 1.60122 1.48388 1.17173 0.85209 0.99986 0.90436 1.91449 1.54758 1.95298 1.70724 1.21046 0.99837 1.00007 0.92820 0.88126 0.94430 0.95488 0.86392 0.94077 0.92107 0.83270 0.84198 0.92247 0.92281 0.77147 0.84262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.14 8.53 37.16 0.32 -2.82 16 2 C 0.10 2.27 4.88 -4.04 -0.02 2.25 16 3 N -0.42 -10.77 2.64 -115.93 -0.31 -11.08 16 4 C -0.29 -7.85 9.49 -15.00 -0.14 -7.99 16 5 H 0.11 3.07 7.20 -52.49 -0.38 2.70 16 6 C 0.02 0.59 5.33 -17.45 -0.09 0.50 16 7 N -0.87 -21.03 7.28 55.50 0.40 -20.62 16 8 Si 0.93 19.90 29.57 -169.99 -5.03 14.88 16 9 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 10 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 11 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 12 C 0.46 11.75 7.23 -12.38 -0.09 11.66 16 13 O -0.59 -16.96 16.57 5.29 0.09 -16.87 16 14 C -0.06 -1.21 5.12 -104.98 -0.54 -1.74 16 15 C -0.12 -2.19 7.39 -39.16 -0.29 -2.48 16 16 C -0.08 -1.22 9.36 -39.65 -0.37 -1.59 16 17 C -0.13 -2.04 5.89 -104.46 -0.62 -2.65 16 18 C 0.13 1.43 7.00 36.01 0.25 1.68 16 19 O -0.57 -5.91 12.12 -35.23 -0.43 -6.33 16 20 C 0.09 1.51 7.24 -39.48 -0.29 1.23 16 21 F -0.14 -2.23 16.79 2.25 0.04 -2.19 16 22 C -0.12 -2.23 9.67 -39.09 -0.38 -2.61 16 23 H 0.10 2.32 5.86 -51.93 -0.30 2.02 16 24 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.03 0.54 6.57 -51.93 -0.34 0.20 16 26 H 0.12 2.83 5.73 -51.93 -0.30 2.53 16 27 H 0.04 0.84 4.97 -51.93 -0.26 0.58 16 28 H 0.27 6.15 8.31 -40.82 -0.34 5.81 16 29 H 0.15 2.72 3.75 -52.48 -0.20 2.52 16 30 H 0.14 1.99 6.99 -52.48 -0.37 1.63 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.38 1.96 9.12 45.56 0.42 2.37 16 34 H 0.14 2.64 8.06 -52.48 -0.42 2.22 16 LS Contribution 284.40 15.07 4.29 4.29 Total: -1.00 -29.97 284.40 -5.75 -35.72 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: -2.55 Total: 6.78 kcal Atomic # 6 Polarization: -2.31 SS G_CDS: -2.25 Total: -4.56 kcal Atomic # 7 Polarization: -31.80 SS G_CDS: 0.10 Total: -31.71 kcal Atomic # 8 Polarization: -22.87 SS G_CDS: -0.34 Total: -23.21 kcal Atomic # 9 Polarization: -2.23 SS G_CDS: 0.04 Total: -2.19 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.03 Total: 14.88 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -29.97 -5.75 -35.72 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279207992.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.056 kcal (2) G-P(sol) polarization free energy of solvation -29.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds