Wall clock time and date at job start Mon Mar 30 2020 00:44:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46496 * 109.47290 * 2 1 4 4 C 1.36872 * 120.00159 * 278.28281 * 3 2 1 5 5 H 1.08000 * 119.99838 * 178.64199 * 4 3 2 6 6 C 1.39048 * 119.99942 * 358.64881 * 4 3 2 7 7 N 1.31361 * 119.99969 * 12.69256 * 6 4 3 8 8 Si 1.86797 * 120.00009 * 192.69617 * 6 4 3 9 9 H 1.48493 * 109.47375 * 89.99503 * 8 6 4 10 10 H 1.48495 * 109.47374 * 209.99929 * 8 6 4 11 11 H 1.48502 * 109.47037 * 329.99752 * 8 6 4 12 12 C 1.34784 * 119.99815 * 98.28569 * 3 2 1 13 13 O 1.21591 * 119.99573 * 186.00684 * 12 3 2 14 14 C 1.47728 * 120.00051 * 6.00412 * 12 3 2 15 15 C 1.39665 * 120.13974 * 315.29246 * 14 12 3 16 16 C 1.37930 * 119.89995 * 180.02562 * 15 14 12 17 17 C 1.38354 * 120.17736 * 359.74697 * 16 15 14 18 18 C 1.50702 * 119.85914 * 180.25520 * 17 16 15 19 19 O 1.42902 * 109.47167 * 0.25318 * 18 17 16 20 20 C 1.38566 * 120.28109 * 0.50773 * 17 16 15 21 21 F 1.35102 * 119.95098 * 179.76353 * 20 17 16 22 22 C 1.38187 * 120.09930 * 359.49660 * 20 17 16 23 23 H 1.09000 * 109.46826 * 71.29341 * 1 2 3 24 24 H 1.09000 * 109.47175 * 191.29251 * 1 2 3 25 25 H 1.09001 * 109.47043 * 311.29009 * 1 2 3 26 26 H 1.08999 * 109.46893 * 239.99820 * 2 1 3 27 27 H 1.09004 * 109.47402 * 120.00240 * 2 1 3 28 28 H 0.97001 * 119.99733 * 180.02562 * 7 6 4 29 29 H 1.08006 * 120.05046 * 0.04521 * 15 14 12 30 30 H 1.08004 * 119.90756 * 179.97438 * 16 15 14 31 31 H 1.08996 * 109.47085 * 120.25214 * 18 17 16 32 32 H 1.08996 * 109.46958 * 240.25470 * 18 17 16 33 33 H 0.96692 * 114.00123 * 179.97438 * 19 18 17 34 34 H 1.08004 * 120.09100 * 180.23331 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.0855 2.0833 -1.1730 5 1 2.4248 3.1087 -1.1698 6 6 1.7168 1.4766 -2.3685 7 7 1.0746 0.3308 -2.3529 8 14 2.1348 2.2909 -3.9969 9 1 3.4664 1.8221 -4.4574 10 1 1.1073 1.9330 -5.0075 11 1 2.1629 3.7651 -3.8203 12 6 2.4016 1.9604 1.1551 13 8 2.7028 3.1383 1.1738 14 6 2.4556 1.1643 2.3983 15 6 1.4095 0.2974 2.7219 16 6 1.4647 -0.4432 3.8842 17 6 2.5560 -0.3334 4.7276 18 6 2.6116 -1.1502 5.9928 19 8 1.4351 -1.9554 6.0921 20 6 3.5955 0.5283 4.4165 21 9 4.6557 0.6339 5.2472 22 6 3.5521 1.2758 3.2550 23 1 -0.3633 0.3296 -0.9734 24 1 -0.3633 -1.0078 0.2012 25 1 -0.3633 0.6781 0.7722 26 1 1.8933 -0.5139 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 0.8178 -0.0926 -3.1869 29 1 0.5586 0.2067 2.0628 30 1 0.6556 -1.1134 4.1347 31 1 3.4913 -1.7934 5.9716 32 1 2.6694 -0.4837 6.8533 33 1 1.4032 -2.5091 6.8841 34 1 4.3642 1.9446 3.0108 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279207992.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:57 Heat of formation + Delta-G solvation = -94.888219 kcal Electronic energy + Delta-G solvation = -20392.876612 eV Core-core repulsion = 17012.764871 eV Total energy + Delta-G solvation = -3380.111741 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -50.00665 -41.26462 -39.43644 -37.48155 -37.20142 -33.99828 -32.65293 -31.93499 -31.01428 -28.17499 -26.47008 -24.04488 -23.83294 -23.14511 -21.26981 -19.09328 -18.64515 -18.46964 -17.41226 -17.05304 -16.95952 -16.85498 -16.29203 -15.88230 -15.58438 -15.57957 -14.98593 -14.88228 -14.70129 -14.08715 -13.84213 -13.42701 -13.15691 -13.02522 -12.86940 -12.62492 -12.35716 -12.26265 -12.11406 -11.95066 -11.80158 -11.22480 -10.82531 -10.53742 -9.99442 -9.80208 -9.57175 -8.26370 -5.91123 -0.18091 0.13731 1.36761 1.42870 1.53889 1.89300 2.22399 2.55224 2.83304 3.08399 3.10618 3.30191 3.69415 3.84602 3.95041 4.18006 4.22674 4.45513 4.48821 4.51458 4.72667 4.83419 4.91861 4.99346 5.04540 5.15846 5.23722 5.35313 5.37383 5.59884 5.78606 5.97049 6.02186 6.48618 6.95551 7.09792 7.38059 7.93739 8.57642 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.031548 B = 0.005299 C = 0.004735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.316502 B = 5282.454060 C = 5912.612353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.105 3.895 3 N -0.430 5.430 4 C -0.341 4.341 5 H 0.076 0.924 6 C 0.003 3.997 7 N -0.864 5.864 8 Si 0.994 3.006 9 H -0.271 1.271 10 H -0.266 1.266 11 H -0.280 1.280 12 C 0.449 3.551 13 O -0.644 6.644 14 C -0.085 4.085 15 C -0.118 4.118 16 C -0.067 4.067 17 C -0.118 4.118 18 C 0.128 3.872 19 O -0.579 6.579 20 C 0.095 3.905 21 F -0.135 7.135 22 C -0.129 4.129 23 H 0.075 0.925 24 H 0.071 0.929 25 H 0.026 0.974 26 H 0.102 0.898 27 H 0.062 0.938 28 H 0.276 0.724 29 H 0.149 0.851 30 H 0.166 0.834 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.406 0.594 34 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.364 -9.714 12.382 15.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.017 4.017 3 N -0.145 5.145 4 C -0.469 4.469 5 H 0.094 0.906 6 C -0.200 4.200 7 N -0.503 5.503 8 Si 0.818 3.182 9 H -0.196 1.196 10 H -0.190 1.190 11 H -0.205 1.205 12 C 0.239 3.761 13 O -0.534 6.534 14 C -0.089 4.089 15 C -0.137 4.137 16 C -0.085 4.085 17 C -0.120 4.120 18 C 0.050 3.950 19 O -0.388 6.388 20 C 0.076 3.924 21 F -0.113 7.113 22 C -0.149 4.149 23 H 0.094 0.906 24 H 0.090 0.910 25 H 0.045 0.955 26 H 0.119 0.881 27 H 0.080 0.920 28 H 0.087 0.913 29 H 0.166 0.834 30 H 0.183 0.817 31 H 0.097 0.903 32 H 0.096 0.904 33 H 0.258 0.742 34 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -0.428 -9.043 11.655 14.758 hybrid contribution 0.667 0.640 -0.361 0.992 sum 0.238 -8.403 11.294 14.080 Atomic orbital electron populations 1.22198 0.95173 1.00393 1.02116 1.22159 0.95858 0.81651 1.02031 1.44019 1.51987 1.13062 1.05450 1.19773 1.44293 0.98176 0.84619 0.90629 1.25998 0.94874 0.97161 1.01939 1.70146 1.34480 1.17206 1.28426 0.84921 0.78508 0.78022 0.76780 1.19613 1.18999 1.20482 1.18425 0.86078 0.87252 0.84300 1.90551 1.58487 1.17968 1.86439 1.19794 0.96208 0.97925 0.94964 1.22115 0.98632 0.94786 0.98120 1.20991 0.97984 0.98095 0.91435 1.20150 0.94020 0.98310 0.99479 1.20710 0.88716 0.92830 0.92715 1.86372 1.41570 1.60524 1.50379 1.17061 0.85929 0.99767 0.89628 1.91472 1.54455 1.95235 1.70164 1.21003 0.99303 1.00676 0.93900 0.90606 0.91024 0.95484 0.88063 0.92034 0.91261 0.83367 0.81670 0.90289 0.90390 0.74220 0.85533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.72 8.53 71.98 0.61 -5.11 16 2 C 0.10 4.70 4.88 86.38 0.42 5.12 16 3 N -0.43 -22.87 2.64 -638.94 -1.69 -24.56 16 4 C -0.34 -19.37 9.49 84.10 0.80 -18.57 16 5 H 0.08 4.67 7.20 -2.91 -0.02 4.65 16 6 C 0.00 0.14 5.33 84.96 0.45 0.59 16 7 N -0.86 -41.71 7.28 21.68 0.16 -41.55 16 8 Si 0.99 41.21 29.57 68.60 2.03 43.24 16 9 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 10 H -0.27 -10.24 7.11 99.48 0.71 -9.53 16 11 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 12 C 0.45 24.02 7.23 86.75 0.63 24.64 16 13 O -0.64 -39.59 16.57 -4.00 -0.07 -39.66 16 14 C -0.09 -3.66 5.12 -20.10 -0.10 -3.76 16 15 C -0.12 -4.17 7.39 22.54 0.17 -4.01 16 16 C -0.07 -1.92 9.36 22.22 0.21 -1.72 16 17 C -0.12 -3.20 5.89 -19.76 -0.12 -3.31 16 18 C 0.13 2.30 7.00 71.24 0.50 2.80 16 19 O -0.58 -9.17 12.12 -148.98 -1.81 -10.98 16 20 C 0.10 3.00 7.24 22.34 0.16 3.17 16 21 F -0.13 -3.88 16.79 44.97 0.75 -3.13 16 22 C -0.13 -4.98 9.67 22.59 0.22 -4.76 16 23 H 0.08 3.48 5.86 -2.39 -0.01 3.46 16 24 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 25 H 0.03 1.07 6.57 -2.39 -0.02 1.06 16 26 H 0.10 4.87 5.73 -2.39 -0.01 4.86 16 27 H 0.06 2.48 4.97 -2.39 -0.01 2.47 16 28 H 0.28 12.37 8.31 -92.71 -0.77 11.60 16 29 H 0.15 5.23 3.75 -2.91 -0.01 5.22 16 30 H 0.17 3.96 6.99 -2.91 -0.02 3.94 16 31 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.41 2.10 9.12 -74.06 -0.68 1.43 16 34 H 0.13 5.08 8.06 -2.91 -0.02 5.06 16 Total: -1.00 -68.04 284.40 3.82 -64.22 By element: Atomic # 1 Polarization: 16.85 SS G_CDS: 0.49 Total: 17.33 kcal Atomic # 6 Polarization: -8.87 SS G_CDS: 3.95 Total: -4.92 kcal Atomic # 7 Polarization: -64.58 SS G_CDS: -1.53 Total: -66.10 kcal Atomic # 8 Polarization: -48.77 SS G_CDS: -1.87 Total: -50.64 kcal Atomic # 9 Polarization: -3.88 SS G_CDS: 0.75 Total: -3.13 kcal Atomic # 14 Polarization: 41.21 SS G_CDS: 2.03 Total: 43.24 kcal Total: -68.04 3.82 -64.22 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279207992.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.669 kcal (2) G-P(sol) polarization free energy of solvation -68.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds