Wall clock time and date at job start Mon Mar 30 2020 00:54:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46495 * 120.00011 * 2 1 4 4 C 1.50698 * 109.47136 * 89.99973 * 3 2 1 5 5 H 1.08002 * 120.00222 * 0.02562 * 4 3 2 6 6 C 1.37872 * 120.00079 * 179.97438 * 4 3 2 7 7 N 1.31513 * 120.00201 * 0.02562 * 6 4 3 8 8 Si 1.86806 * 120.00079 * 179.97438 * 6 4 3 9 9 H 1.48502 * 109.46856 * 0.02562 * 8 6 4 10 10 H 1.48495 * 109.46900 * 120.00194 * 8 6 4 11 11 H 1.48493 * 109.47208 * 240.00072 * 8 6 4 12 12 C 1.34780 * 119.99897 * 180.02562 * 2 1 3 13 13 O 1.21545 * 119.99951 * 186.97974 * 12 2 1 14 14 C 1.47850 * 119.99772 * 6.98103 * 12 2 1 15 15 C 1.39603 * 120.12616 * 200.59463 * 14 12 2 16 16 C 1.37942 * 119.89900 * 179.97438 * 15 14 12 17 17 C 1.38341 * 120.18147 * 0.02562 * 16 15 14 18 18 C 1.50695 * 119.87084 * 180.02562 * 17 16 15 19 19 O 1.42898 * 109.47243 * 359.97438 * 18 17 16 20 20 C 1.38556 * 120.26464 * 359.97438 * 17 16 15 21 21 F 1.35095 * 119.95625 * 180.02562 * 20 17 16 22 22 C 1.38215 * 120.08885 * 359.72715 * 20 17 16 23 23 H 1.09005 * 109.46922 * 85.93670 * 1 2 3 24 24 H 1.09002 * 109.47329 * 205.93213 * 1 2 3 25 25 H 1.08998 * 109.47408 * 325.93677 * 1 2 3 26 26 H 1.09007 * 109.47042 * 329.99888 * 3 2 1 27 27 H 1.09004 * 109.47216 * 209.99915 * 3 2 1 28 28 H 0.97000 * 120.00352 * 180.02562 * 7 6 4 29 29 H 1.07997 * 120.04878 * 0.02562 * 15 14 12 30 30 H 1.08009 * 119.90907 * 180.02562 * 16 15 14 31 31 H 1.09001 * 109.46773 * 119.99835 * 18 17 16 32 32 H 1.08992 * 109.47371 * 239.99561 * 18 17 16 33 33 H 0.96701 * 114.00224 * 179.97438 * 19 18 17 34 34 H 1.08005 * 120.08419 * 180.30033 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7037 1.4208 5 1 2.0981 1.0957 2.2417 6 6 3.1269 2.8774 1.6727 7 7 3.5542 3.6175 0.6732 8 14 3.4376 3.4170 3.4340 9 1 2.8596 2.4169 4.3673 10 1 4.9000 3.5246 3.6680 11 1 2.8006 4.7380 3.6666 12 6 2.1389 -1.1672 -0.0005 13 8 3.3476 -1.1712 0.1274 14 6 1.4078 -2.4428 -0.1567 15 6 1.9918 -3.6406 0.2593 16 6 1.3053 -4.8280 0.1118 17 6 0.0400 -4.8349 -0.4476 18 6 -0.7039 -6.1360 -0.6048 19 8 0.1001 -7.2075 -0.1076 20 6 -0.5464 -3.6503 -0.8629 21 9 -1.7825 -3.6642 -1.4079 22 6 0.1290 -2.4535 -0.7147 23 1 -0.3633 0.0728 -1.0251 24 1 -0.3634 -0.9242 0.4494 25 1 -0.3634 0.8513 0.5756 26 1 1.6084 2.0284 -0.5139 27 1 3.1499 1.1384 -0.5138 28 1 4.0317 4.4430 0.8504 29 1 2.9792 -3.6376 0.6966 30 1 1.7568 -5.7547 0.4339 31 1 -1.6373 -6.0909 -0.0436 32 1 -0.9219 -6.3047 -1.6593 33 1 -0.3171 -8.0772 -0.1768 34 1 -0.3302 -1.5296 -1.0340 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279218972.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:15 Heat of formation + Delta-G solvation = -80.982720 kcal Electronic energy + Delta-G solvation = -19831.074702 eV Core-core repulsion = 16451.565949 eV Total energy + Delta-G solvation = -3379.508754 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.01674 -40.02832 -38.28889 -36.72050 -35.09970 -32.87507 -31.75471 -30.63074 -28.01368 -26.91356 -25.79066 -23.31590 -22.71531 -21.58912 -19.42400 -17.97284 -17.04257 -16.58179 -16.54713 -16.00416 -15.97206 -15.39126 -15.15436 -14.91798 -14.56828 -14.26059 -14.03359 -13.36733 -13.04708 -12.68393 -12.46238 -12.28969 -12.03654 -11.90634 -11.44094 -11.27176 -10.92553 -10.84101 -10.65717 -10.55926 -10.17802 -9.64974 -9.14275 -8.87305 -8.67891 -8.45255 -7.72938 -6.05878 -4.10497 0.79056 1.15711 3.10659 3.29927 3.37546 3.41869 3.72399 3.76635 3.96092 4.18754 4.43968 4.54194 4.76419 4.88304 5.04298 5.08120 5.18269 5.28446 5.34306 5.54529 5.74042 5.74691 5.92042 6.03411 6.15655 6.22651 6.34272 6.77104 7.00456 7.24472 7.37045 7.46123 7.90090 8.19878 8.29328 8.84305 8.99229 9.54569 11.02380 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.034648 B = 0.004263 C = 0.004058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.934254 B = 6565.824841 C = 6897.742840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.593 5.593 3 C 0.245 3.755 4 C -0.526 4.526 5 H 0.059 0.941 6 C 0.061 3.939 7 N -0.895 5.895 8 Si 0.899 3.101 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.283 1.283 12 C 0.543 3.457 13 O -0.528 6.528 14 C -0.091 4.091 15 C -0.076 4.076 16 C -0.079 4.079 17 C -0.117 4.117 18 C 0.121 3.879 19 O -0.567 6.567 20 C 0.089 3.911 21 F -0.139 7.139 22 C -0.145 4.145 23 H 0.052 0.948 24 H 0.072 0.928 25 H 0.076 0.924 26 H 0.036 0.964 27 H 0.045 0.955 28 H 0.263 0.737 29 H 0.142 0.858 30 H 0.145 0.855 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.384 0.616 34 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.461 -17.805 -3.479 21.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.324 5.324 3 C 0.126 3.874 4 C -0.565 4.565 5 H 0.077 0.923 6 C -0.141 4.141 7 N -0.534 5.534 8 Si 0.727 3.273 9 H -0.198 1.198 10 H -0.208 1.208 11 H -0.210 1.210 12 C 0.330 3.670 13 O -0.406 6.406 14 C -0.094 4.094 15 C -0.095 4.095 16 C -0.097 4.097 17 C -0.118 4.118 18 C 0.044 3.956 19 O -0.373 6.373 20 C 0.069 3.931 21 F -0.118 7.118 22 C -0.163 4.163 23 H 0.070 0.930 24 H 0.090 0.910 25 H 0.094 0.906 26 H 0.054 0.946 27 H 0.063 0.937 28 H 0.073 0.927 29 H 0.160 0.840 30 H 0.163 0.837 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.232 0.768 34 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -10.358 -17.088 -3.357 20.262 hybrid contribution -0.563 0.016 0.706 0.903 sum -10.921 -17.072 -2.652 20.439 Atomic orbital electron populations 1.22269 0.81779 1.03213 1.00308 1.48080 1.06118 1.07700 1.70469 1.19367 0.92466 0.77719 0.97809 1.21455 1.36523 1.06254 0.92219 0.92286 1.24936 0.95301 0.96347 0.97527 1.69938 1.38397 1.14385 1.30703 0.86422 0.78109 0.78281 0.84505 1.19778 1.20832 1.20954 1.18078 0.87229 0.83139 0.78604 1.90766 1.13720 1.86663 1.49404 1.20197 0.93876 0.95320 1.00015 1.21423 1.00421 0.90606 0.97034 1.20828 0.92882 0.98637 0.97371 1.19835 0.96729 0.93003 1.02248 1.20735 0.92124 0.84468 0.98293 1.86437 1.46447 1.18206 1.86161 1.17235 0.81572 0.93674 1.00571 1.91479 1.39404 1.97333 1.83554 1.22318 0.94991 0.98375 1.00652 0.92964 0.90954 0.90552 0.94630 0.93733 0.92727 0.84013 0.83713 0.91862 0.91886 0.76820 0.81641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.08 8.65 59.85 0.52 1.60 16 2 N -0.59 -12.74 2.86 -184.07 -0.53 -13.27 16 3 C 0.25 6.41 5.13 -5.20 -0.03 6.39 16 4 C -0.53 -14.99 9.39 -34.44 -0.32 -15.31 16 5 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 6 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 7 N -0.90 -26.58 13.29 55.43 0.74 -25.84 16 8 Si 0.90 21.95 29.54 -169.99 -5.02 16.93 16 9 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 10 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 12 C 0.54 11.73 7.51 -12.33 -0.09 11.64 16 13 O -0.53 -13.55 16.19 5.33 0.09 -13.46 16 14 C -0.09 -1.53 5.57 -104.97 -0.58 -2.11 16 15 C -0.08 -1.15 9.59 -39.18 -0.38 -1.52 16 16 C -0.08 -1.01 9.36 -39.65 -0.37 -1.39 16 17 C -0.12 -1.41 5.89 -104.47 -0.62 -2.03 16 18 C 0.12 1.07 7.00 36.00 0.25 1.32 16 19 O -0.57 -4.67 12.12 -35.23 -0.43 -5.10 16 20 C 0.09 1.14 7.24 -39.47 -0.29 0.85 16 21 F -0.14 -1.67 16.79 2.25 0.04 -1.64 16 22 C -0.14 -2.05 7.59 -39.11 -0.30 -2.35 16 23 H 0.05 0.70 7.03 -51.93 -0.36 0.33 16 24 H 0.07 1.02 5.22 -51.93 -0.27 0.75 16 25 H 0.08 1.24 8.10 -51.93 -0.42 0.82 16 26 H 0.04 0.93 8.07 -51.92 -0.42 0.51 16 27 H 0.04 1.30 7.53 -51.93 -0.39 0.91 16 28 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 29 H 0.14 2.16 7.79 -52.49 -0.41 1.75 16 30 H 0.15 1.66 6.99 -52.48 -0.37 1.29 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.38 1.23 9.12 45.56 0.42 1.64 16 34 H 0.17 2.15 4.04 -52.48 -0.21 1.93 16 LS Contribution 296.76 15.07 4.47 4.47 Total: -1.00 -34.04 296.76 -5.77 -39.81 By element: Atomic # 1 Polarization: 2.17 SS G_CDS: -2.83 Total: -0.65 kcal Atomic # 6 Polarization: 1.04 SS G_CDS: -2.30 Total: -1.26 kcal Atomic # 7 Polarization: -39.32 SS G_CDS: 0.21 Total: -39.11 kcal Atomic # 8 Polarization: -18.21 SS G_CDS: -0.34 Total: -18.56 kcal Atomic # 9 Polarization: -1.67 SS G_CDS: 0.04 Total: -1.64 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -34.04 -5.77 -39.81 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279218972.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.171 kcal (2) G-P(sol) polarization free energy of solvation -34.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds