Wall clock time and date at job start Mon Mar 30 2020 00:54:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46495 * 120.00011 * 2 1 4 4 C 1.50698 * 109.47136 * 89.99973 * 3 2 1 5 5 H 1.08002 * 120.00222 * 0.02562 * 4 3 2 6 6 C 1.37872 * 120.00079 * 179.97438 * 4 3 2 7 7 N 1.31513 * 120.00201 * 0.02562 * 6 4 3 8 8 Si 1.86806 * 120.00079 * 179.97438 * 6 4 3 9 9 H 1.48502 * 109.46856 * 0.02562 * 8 6 4 10 10 H 1.48495 * 109.46900 * 120.00194 * 8 6 4 11 11 H 1.48493 * 109.47208 * 240.00072 * 8 6 4 12 12 C 1.34780 * 119.99897 * 180.02562 * 2 1 3 13 13 O 1.21545 * 119.99951 * 186.97974 * 12 2 1 14 14 C 1.47850 * 119.99772 * 6.98103 * 12 2 1 15 15 C 1.39603 * 120.12616 * 200.59463 * 14 12 2 16 16 C 1.37942 * 119.89900 * 179.97438 * 15 14 12 17 17 C 1.38341 * 120.18147 * 0.02562 * 16 15 14 18 18 C 1.50695 * 119.87084 * 180.02562 * 17 16 15 19 19 O 1.42898 * 109.47243 * 359.97438 * 18 17 16 20 20 C 1.38556 * 120.26464 * 359.97438 * 17 16 15 21 21 F 1.35095 * 119.95625 * 180.02562 * 20 17 16 22 22 C 1.38215 * 120.08885 * 359.72715 * 20 17 16 23 23 H 1.09005 * 109.46922 * 85.93670 * 1 2 3 24 24 H 1.09002 * 109.47329 * 205.93213 * 1 2 3 25 25 H 1.08998 * 109.47408 * 325.93677 * 1 2 3 26 26 H 1.09007 * 109.47042 * 329.99888 * 3 2 1 27 27 H 1.09004 * 109.47216 * 209.99915 * 3 2 1 28 28 H 0.97000 * 120.00352 * 180.02562 * 7 6 4 29 29 H 1.07997 * 120.04878 * 0.02562 * 15 14 12 30 30 H 1.08009 * 119.90907 * 180.02562 * 16 15 14 31 31 H 1.09001 * 109.46773 * 119.99835 * 18 17 16 32 32 H 1.08992 * 109.47371 * 239.99561 * 18 17 16 33 33 H 0.96701 * 114.00224 * 179.97438 * 19 18 17 34 34 H 1.08005 * 120.08419 * 180.30033 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7037 1.4208 5 1 2.0981 1.0957 2.2417 6 6 3.1269 2.8774 1.6727 7 7 3.5542 3.6175 0.6732 8 14 3.4376 3.4170 3.4340 9 1 2.8596 2.4169 4.3673 10 1 4.9000 3.5246 3.6680 11 1 2.8006 4.7380 3.6666 12 6 2.1389 -1.1672 -0.0005 13 8 3.3476 -1.1712 0.1274 14 6 1.4078 -2.4428 -0.1567 15 6 1.9918 -3.6406 0.2593 16 6 1.3053 -4.8280 0.1118 17 6 0.0400 -4.8349 -0.4476 18 6 -0.7039 -6.1360 -0.6048 19 8 0.1001 -7.2075 -0.1076 20 6 -0.5464 -3.6503 -0.8629 21 9 -1.7825 -3.6642 -1.4079 22 6 0.1290 -2.4535 -0.7147 23 1 -0.3633 0.0728 -1.0251 24 1 -0.3634 -0.9242 0.4494 25 1 -0.3634 0.8513 0.5756 26 1 1.6084 2.0284 -0.5139 27 1 3.1499 1.1384 -0.5138 28 1 4.0317 4.4430 0.8504 29 1 2.9792 -3.6376 0.6966 30 1 1.7568 -5.7547 0.4339 31 1 -1.6373 -6.0909 -0.0436 32 1 -0.9219 -6.3047 -1.6593 33 1 -0.3171 -8.0772 -0.1768 34 1 -0.3302 -1.5296 -1.0340 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279218972.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:15 Heat of formation + Delta-G solvation = -105.689896 kcal Electronic energy + Delta-G solvation = -19832.146086 eV Core-core repulsion = 16451.565949 eV Total energy + Delta-G solvation = -3380.580137 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.99315 -41.42503 -39.53273 -37.51716 -36.85418 -34.88400 -32.99765 -31.76937 -29.81640 -28.17060 -27.20993 -25.09760 -23.80897 -22.85034 -20.89854 -18.92999 -18.74131 -18.22588 -17.70249 -17.06022 -16.99237 -16.90535 -16.48435 -16.15132 -16.03053 -15.59493 -15.19450 -14.72199 -14.40118 -14.25962 -13.88858 -13.64739 -13.45634 -13.27698 -13.03103 -12.84771 -12.59155 -12.32152 -12.26109 -12.04191 -11.71757 -11.27846 -10.82623 -10.66345 -9.97066 -9.78951 -9.49154 -8.24585 -6.39114 -0.37079 0.08059 1.35934 1.38509 1.50379 1.73820 2.17083 2.39955 2.60387 2.96971 3.05368 3.19250 3.45667 3.76888 3.85303 4.06173 4.16862 4.25145 4.45417 4.49157 4.51924 4.63313 4.82387 4.88016 4.92945 4.98857 5.14640 5.19106 5.29540 5.50398 5.70241 5.77523 6.02270 6.59045 6.69549 6.91828 7.19523 7.35084 8.82975 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.034648 B = 0.004263 C = 0.004058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.934254 B = 6565.824841 C = 6897.742840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.600 5.600 3 C 0.259 3.741 4 C -0.544 4.544 5 H 0.051 0.949 6 C 0.009 3.991 7 N -0.927 5.927 8 Si 0.969 3.031 9 H -0.269 1.269 10 H -0.281 1.281 11 H -0.267 1.267 12 C 0.536 3.464 13 O -0.586 6.586 14 C -0.114 4.114 15 C -0.082 4.082 16 C -0.074 4.074 17 C -0.105 4.105 18 C 0.122 3.878 19 O -0.582 6.582 20 C 0.093 3.907 21 F -0.129 7.129 22 C -0.138 4.138 23 H 0.085 0.915 24 H 0.096 0.904 25 H 0.073 0.927 26 H 0.033 0.967 27 H 0.001 0.999 28 H 0.268 0.732 29 H 0.130 0.870 30 H 0.161 0.839 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.407 0.593 34 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.802 -19.627 -3.023 24.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.329 5.329 3 C 0.138 3.862 4 C -0.583 4.583 5 H 0.069 0.931 6 C -0.190 4.190 7 N -0.567 5.567 8 Si 0.793 3.207 9 H -0.194 1.194 10 H -0.206 1.206 11 H -0.192 1.192 12 C 0.326 3.674 13 O -0.468 6.468 14 C -0.117 4.117 15 C -0.101 4.101 16 C -0.092 4.092 17 C -0.106 4.106 18 C 0.045 3.955 19 O -0.392 6.392 20 C 0.074 3.926 21 F -0.108 7.108 22 C -0.156 4.156 23 H 0.103 0.897 24 H 0.114 0.886 25 H 0.091 0.909 26 H 0.051 0.949 27 H 0.019 0.981 28 H 0.077 0.923 29 H 0.148 0.852 30 H 0.179 0.821 31 H 0.100 0.900 32 H 0.099 0.901 33 H 0.258 0.742 34 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -12.765 -18.940 -2.913 23.025 hybrid contribution 0.100 0.456 0.499 0.683 sum -12.665 -18.484 -2.414 22.537 Atomic orbital electron populations 1.22596 0.78282 1.04370 1.02629 1.48065 1.08316 1.06268 1.70290 1.18864 0.91159 0.79832 0.96349 1.21698 1.37066 1.06578 0.92933 0.93070 1.25842 0.94778 0.96319 1.02056 1.70043 1.38821 1.14855 1.32951 0.85351 0.77941 0.78390 0.79018 1.19356 1.20646 1.19191 1.18826 0.86902 0.84557 0.77133 1.90714 1.16294 1.87672 1.52094 1.19726 0.95183 0.93110 1.03675 1.21430 1.00294 0.91133 0.97254 1.20930 0.93152 0.98025 0.97113 1.20282 0.96172 0.94565 0.99593 1.20807 0.91988 0.83019 0.99736 1.86376 1.47139 1.19479 1.86203 1.17119 0.81776 0.93329 1.00366 1.91511 1.38675 1.97262 1.83328 1.22294 0.93793 0.99695 0.99829 0.89713 0.88566 0.90864 0.94913 0.98099 0.92284 0.85213 0.82134 0.89957 0.90069 0.74158 0.80556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.94 8.65 127.77 1.11 3.05 16 2 N -0.60 -26.54 2.86 -854.57 -2.44 -28.98 16 3 C 0.26 14.20 5.13 85.63 0.44 14.64 16 4 C -0.54 -32.01 9.39 25.60 0.24 -31.77 16 5 H 0.05 3.01 7.81 -2.91 -0.02 2.99 16 6 C 0.01 0.53 5.46 84.65 0.46 1.00 16 7 N -0.93 -56.31 13.29 21.45 0.28 -56.02 16 8 Si 0.97 45.48 29.54 68.60 2.03 47.51 16 9 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 10 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 11 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 12 C 0.54 24.15 7.51 86.79 0.65 24.80 16 13 O -0.59 -32.07 16.19 -3.86 -0.06 -32.14 16 14 C -0.11 -3.83 5.57 -20.09 -0.11 -3.95 16 15 C -0.08 -2.48 9.59 22.53 0.22 -2.26 16 16 C -0.07 -1.76 9.36 22.22 0.21 -1.55 16 17 C -0.10 -2.19 5.89 -19.77 -0.12 -2.30 16 18 C 0.12 1.62 7.00 71.23 0.50 2.12 16 19 O -0.58 -7.31 12.12 -148.98 -1.81 -9.12 16 20 C 0.09 2.10 7.24 22.34 0.16 2.26 16 21 F -0.13 -2.61 16.79 44.97 0.75 -1.85 16 22 C -0.14 -3.64 7.59 22.57 0.17 -3.47 16 23 H 0.08 2.09 7.03 -2.38 -0.02 2.08 16 24 H 0.10 2.54 5.22 -2.39 -0.01 2.53 16 25 H 0.07 2.32 8.10 -2.39 -0.02 2.30 16 26 H 0.03 1.78 8.07 -2.38 -0.02 1.76 16 27 H 0.00 0.06 7.53 -2.39 -0.02 0.04 16 28 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 29 H 0.13 4.16 7.79 -2.91 -0.02 4.13 16 30 H 0.16 3.29 6.99 -2.91 -0.02 3.27 16 31 H 0.08 0.85 8.14 -2.39 -0.02 0.84 16 32 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.41 0.96 9.12 -74.06 -0.68 0.28 16 34 H 0.18 4.16 4.04 -2.91 -0.01 4.14 16 Total: -1.00 -76.60 296.76 3.16 -73.44 By element: Atomic # 1 Polarization: 4.11 SS G_CDS: 0.47 Total: 4.59 kcal Atomic # 6 Polarization: -1.35 SS G_CDS: 3.93 Total: 2.57 kcal Atomic # 7 Polarization: -82.84 SS G_CDS: -2.16 Total: -85.00 kcal Atomic # 8 Polarization: -39.39 SS G_CDS: -1.87 Total: -41.26 kcal Atomic # 9 Polarization: -2.61 SS G_CDS: 0.75 Total: -1.85 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.51 kcal Total: -76.60 3.16 -73.44 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279218972.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.248 kcal (2) G-P(sol) polarization free energy of solvation -76.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds