Wall clock time and date at job start Mon Mar 30 2020 00:58:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35958 * 116.99813 * 2 1 4 4 C 1.38655 * 120.06410 * 359.97438 * 3 2 1 5 5 C 1.38177 * 119.97092 * 180.02562 * 4 3 2 6 6 C 1.38267 * 120.09453 * 359.97438 * 5 4 3 7 7 C 1.38251 * 120.12749 * 0.02562 * 6 5 4 8 8 C 1.50693 * 119.98622 * 179.97438 * 7 6 5 9 9 C 1.52999 * 109.47245 * 264.99721 * 8 7 6 10 10 C 1.50703 * 109.46864 * 180.02562 * 9 8 7 11 11 O 1.21294 * 120.00513 * 0.02562 * 10 9 8 12 12 N 1.34779 * 119.99496 * 180.02562 * 10 9 8 13 13 C 1.37102 * 119.99680 * 180.02562 * 12 10 9 14 14 H 1.07997 * 119.99866 * 0.02562 * 13 12 10 15 15 C 1.38952 * 120.00018 * 179.97438 * 13 12 10 16 16 N 1.31412 * 119.99896 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99949 * 179.97438 * 15 13 12 18 18 H 1.48494 * 109.47251 * 90.00513 * 17 15 13 19 19 H 1.48511 * 109.46994 * 210.00291 * 17 15 13 20 20 H 1.48500 * 109.47179 * 330.00090 * 17 15 13 21 21 C 1.38338 * 120.03013 * 359.97438 * 7 6 5 22 22 F 1.35100 * 120.04992 * 180.28191 * 21 7 6 23 23 H 1.08998 * 109.47460 * 60.00264 * 1 2 3 24 24 H 1.09003 * 109.47092 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47200 * 300.00040 * 1 2 3 26 26 H 1.08005 * 120.01507 * 0.02562 * 4 3 2 27 27 H 1.07999 * 119.95506 * 180.02562 * 5 4 3 28 28 H 1.08000 * 119.93539 * 179.97438 * 6 5 4 29 29 H 1.09003 * 109.47058 * 25.00266 * 8 7 6 30 30 H 1.09007 * 109.46913 * 144.99613 * 8 7 6 31 31 H 1.08999 * 109.47088 * 300.00072 * 9 8 7 32 32 H 1.08994 * 109.47014 * 59.99952 * 9 8 7 33 33 H 0.96996 * 120.00399 * 359.97438 * 12 10 9 34 34 H 0.96992 * 120.00191 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0461 1.2114 0.0000 4 6 1.2922 2.3751 -0.0005 5 6 1.9215 3.6053 -0.0011 6 6 3.3023 3.6777 -0.0005 7 6 4.0579 2.5199 0.0000 8 6 5.5625 2.6026 0.0000 9 6 6.0787 2.5043 -1.4369 10 6 7.5835 2.5864 -1.4368 11 8 8.1841 2.7107 -0.3903 12 7 8.2620 2.5216 -2.5996 13 6 9.6310 2.5957 -2.5994 14 1 10.1657 2.7056 -1.6676 15 6 10.3305 2.5284 -3.7981 16 7 9.6799 2.3942 -4.9319 17 14 12.1957 2.6301 -3.7980 18 1 12.7659 1.2645 -3.6755 19 1 12.6579 3.2475 -5.0671 20 1 12.6462 3.4593 -2.6513 21 6 3.4333 1.2856 0.0005 22 9 4.1713 0.1540 0.0068 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8899 26 1 0.2136 2.3200 -0.0005 27 1 1.3340 4.5115 -0.0011 28 1 3.7914 4.6406 -0.0014 29 1 5.8742 3.5527 0.4339 30 1 5.9715 1.7822 0.5899 31 1 5.7671 1.5542 -1.8708 32 1 5.6698 3.3246 -2.0267 33 1 7.7818 2.4218 -3.4364 34 1 10.1681 2.3476 -5.7687 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000286121680.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:23 Heat of formation + Delta-G solvation = -106.971426 kcal Electronic energy + Delta-G solvation = -19425.489270 eV Core-core repulsion = 16044.853561 eV Total energy + Delta-G solvation = -3380.635708 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.64960 -40.12784 -38.39469 -37.61915 -34.12311 -33.26005 -31.19299 -30.38090 -29.35767 -27.52688 -25.48139 -23.64426 -22.62815 -21.10273 -19.04667 -18.13939 -17.79353 -17.12207 -16.95088 -16.25464 -15.84980 -15.05487 -14.90767 -14.68952 -14.51558 -14.33825 -13.94894 -13.66164 -12.99206 -12.75499 -12.48645 -12.29427 -12.07271 -11.73769 -11.61919 -11.51234 -11.11499 -11.06474 -10.97103 -10.52746 -10.36792 -10.18282 -9.48620 -8.82568 -8.32424 -8.29748 -7.93925 -6.38633 -3.79501 1.04441 1.17487 2.95491 3.20250 3.28543 3.34569 3.47216 3.95304 4.19857 4.21628 4.54856 4.67520 4.83962 4.86621 4.98758 5.10116 5.17124 5.20097 5.28326 5.37778 5.60448 5.67832 5.86413 5.94651 6.04795 6.14401 6.26889 6.44730 6.52295 6.55689 6.64420 7.14262 7.58159 8.08948 8.63783 9.20337 9.58098 10.09175 10.79110 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.037464 B = 0.003579 C = 0.003489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.205910 B = 7821.321335 C = 8022.177302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.311 6.311 3 C 0.093 3.907 4 C -0.193 4.193 5 C -0.090 4.090 6 C -0.126 4.126 7 C -0.068 4.068 8 C -0.061 4.061 9 C -0.124 4.124 10 C 0.441 3.559 11 O -0.597 6.597 12 N -0.562 5.562 13 C -0.301 4.301 14 H 0.103 0.897 15 C 0.022 3.978 16 N -0.901 5.901 17 Si 0.930 3.070 18 H -0.278 1.278 19 H -0.284 1.284 20 H -0.269 1.269 21 C 0.071 3.929 22 F -0.127 7.127 23 H 0.056 0.944 24 H 0.101 0.899 25 H 0.055 0.945 26 H 0.134 0.866 27 H 0.130 0.870 28 H 0.136 0.864 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.393 0.607 34 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.145 0.173 6.661 21.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.224 6.224 3 C 0.047 3.953 4 C -0.212 4.212 5 C -0.108 4.108 6 C -0.144 4.144 7 C -0.069 4.069 8 C -0.099 4.099 9 C -0.164 4.164 10 C 0.228 3.772 11 O -0.483 6.483 12 N -0.198 5.198 13 C -0.431 4.431 14 H 0.121 0.879 15 C -0.180 4.180 16 N -0.543 5.543 17 Si 0.757 3.243 18 H -0.204 1.204 19 H -0.209 1.209 20 H -0.194 1.194 21 C 0.051 3.949 22 F -0.106 7.106 23 H 0.075 0.925 24 H 0.119 0.881 25 H 0.074 0.926 26 H 0.152 0.848 27 H 0.148 0.852 28 H 0.154 0.846 29 H 0.105 0.895 30 H 0.102 0.898 31 H 0.096 0.904 32 H 0.098 0.902 33 H 0.227 0.773 34 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -19.548 0.001 7.149 20.815 hybrid contribution 0.384 -0.141 -0.713 0.822 sum -19.164 -0.140 6.436 20.217 Atomic orbital electron populations 1.23082 0.78202 1.04102 1.01348 1.86146 1.21489 1.25963 1.88837 1.18999 0.90752 0.85554 1.00014 1.21059 0.99982 0.91600 1.08513 1.20968 0.94554 0.97058 0.98208 1.20954 0.93378 0.97931 1.02121 1.20072 0.97671 0.90766 0.98422 1.20277 0.87116 1.04949 0.97563 1.21438 0.95175 1.03071 0.96765 1.19882 0.88444 0.84210 0.84700 1.90511 1.70312 1.55948 1.31556 1.41905 1.07323 1.63335 1.07196 1.19734 0.81502 1.47011 0.94812 0.87907 1.25273 1.00691 0.97296 0.94696 1.69615 1.36600 1.50093 0.97946 0.85858 0.82244 0.78525 0.77657 1.20394 1.20933 1.19406 1.16872 0.85712 0.82980 1.09294 1.91511 1.76371 1.48626 1.94081 0.92506 0.88098 0.92589 0.84839 0.85172 0.84628 0.89493 0.89773 0.90379 0.90241 0.77349 0.91872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.19 16 2 O -0.31 -3.87 10.36 -19.61 -0.20 -4.08 16 3 C 0.09 1.21 6.69 -39.18 -0.26 0.95 16 4 C -0.19 -1.95 9.04 -39.45 -0.36 -2.31 16 5 C -0.09 -0.87 10.04 -39.59 -0.40 -1.27 16 6 C -0.13 -1.46 9.68 -39.57 -0.38 -1.84 16 7 C -0.07 -0.98 5.14 -104.58 -0.54 -1.52 16 8 C -0.06 -1.03 4.41 -27.89 -0.12 -1.15 16 9 C -0.12 -2.28 5.68 -27.88 -0.16 -2.44 16 10 C 0.44 10.73 7.78 -10.98 -0.09 10.65 16 11 O -0.60 -16.49 15.56 5.54 0.09 -16.40 16 12 N -0.56 -14.71 5.29 -10.96 -0.06 -14.77 16 13 C -0.30 -8.59 9.68 -14.93 -0.14 -8.73 16 14 H 0.10 3.06 7.16 -52.49 -0.38 2.68 16 15 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 16 N -0.90 -25.00 13.05 55.50 0.72 -24.27 16 17 Si 0.93 21.37 29.55 -169.99 -5.02 16.35 16 18 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 19 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 20 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 21 C 0.07 1.08 7.25 -39.29 -0.28 0.80 16 22 F -0.13 -2.20 16.41 2.25 0.04 -2.17 16 23 H 0.06 0.34 7.66 -51.93 -0.40 -0.06 16 24 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 25 H 0.06 0.32 7.66 -51.93 -0.40 -0.08 16 26 H 0.13 0.96 6.30 -52.48 -0.33 0.63 16 27 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 28 H 0.14 1.35 8.06 -52.49 -0.42 0.93 16 29 H 0.09 1.42 8.01 -51.93 -0.42 1.01 16 30 H 0.08 1.54 7.74 -51.92 -0.40 1.14 16 31 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 32 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 33 H 0.39 9.87 7.90 -40.82 -0.32 9.54 16 34 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 303.52 15.07 4.57 4.57 Total: -1.00 -33.00 303.52 -5.59 -38.59 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -3.89 Total: 7.35 kcal Atomic # 6 Polarization: -3.34 SS G_CDS: -1.84 Total: -5.17 kcal Atomic # 7 Polarization: -39.71 SS G_CDS: 0.67 Total: -39.04 kcal Atomic # 8 Polarization: -20.36 SS G_CDS: -0.12 Total: -20.48 kcal Atomic # 9 Polarization: -2.20 SS G_CDS: 0.04 Total: -2.17 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -33.00 -5.59 -38.59 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286121680.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.379 kcal (2) G-P(sol) polarization free energy of solvation -33.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds