Wall clock time and date at job start Mon Mar 30 2020 00:58:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35958 * 116.99813 * 2 1 4 4 C 1.38655 * 120.06410 * 359.97438 * 3 2 1 5 5 C 1.38177 * 119.97092 * 180.02562 * 4 3 2 6 6 C 1.38267 * 120.09453 * 359.97438 * 5 4 3 7 7 C 1.38251 * 120.12749 * 0.02562 * 6 5 4 8 8 C 1.50693 * 119.98622 * 179.97438 * 7 6 5 9 9 C 1.52999 * 109.47245 * 264.99721 * 8 7 6 10 10 C 1.50703 * 109.46864 * 180.02562 * 9 8 7 11 11 O 1.21294 * 120.00513 * 0.02562 * 10 9 8 12 12 N 1.34779 * 119.99496 * 180.02562 * 10 9 8 13 13 C 1.37102 * 119.99680 * 180.02562 * 12 10 9 14 14 H 1.07997 * 119.99866 * 0.02562 * 13 12 10 15 15 C 1.38952 * 120.00018 * 179.97438 * 13 12 10 16 16 N 1.31412 * 119.99896 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99949 * 179.97438 * 15 13 12 18 18 H 1.48494 * 109.47251 * 90.00513 * 17 15 13 19 19 H 1.48511 * 109.46994 * 210.00291 * 17 15 13 20 20 H 1.48500 * 109.47179 * 330.00090 * 17 15 13 21 21 C 1.38338 * 120.03013 * 359.97438 * 7 6 5 22 22 F 1.35100 * 120.04992 * 180.28191 * 21 7 6 23 23 H 1.08998 * 109.47460 * 60.00264 * 1 2 3 24 24 H 1.09003 * 109.47092 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47200 * 300.00040 * 1 2 3 26 26 H 1.08005 * 120.01507 * 0.02562 * 4 3 2 27 27 H 1.07999 * 119.95506 * 180.02562 * 5 4 3 28 28 H 1.08000 * 119.93539 * 179.97438 * 6 5 4 29 29 H 1.09003 * 109.47058 * 25.00266 * 8 7 6 30 30 H 1.09007 * 109.46913 * 144.99613 * 8 7 6 31 31 H 1.08999 * 109.47088 * 300.00072 * 9 8 7 32 32 H 1.08994 * 109.47014 * 59.99952 * 9 8 7 33 33 H 0.96996 * 120.00399 * 359.97438 * 12 10 9 34 34 H 0.96992 * 120.00191 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0461 1.2114 0.0000 4 6 1.2922 2.3751 -0.0005 5 6 1.9215 3.6053 -0.0011 6 6 3.3023 3.6777 -0.0005 7 6 4.0579 2.5199 0.0000 8 6 5.5625 2.6026 0.0000 9 6 6.0787 2.5043 -1.4369 10 6 7.5835 2.5864 -1.4368 11 8 8.1841 2.7107 -0.3903 12 7 8.2620 2.5216 -2.5996 13 6 9.6310 2.5957 -2.5994 14 1 10.1657 2.7056 -1.6676 15 6 10.3305 2.5284 -3.7981 16 7 9.6799 2.3942 -4.9319 17 14 12.1957 2.6301 -3.7980 18 1 12.7659 1.2645 -3.6755 19 1 12.6579 3.2475 -5.0671 20 1 12.6462 3.4593 -2.6513 21 6 3.4333 1.2856 0.0005 22 9 4.1713 0.1540 0.0068 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8899 26 1 0.2136 2.3200 -0.0005 27 1 1.3340 4.5115 -0.0011 28 1 3.7914 4.6406 -0.0014 29 1 5.8742 3.5527 0.4339 30 1 5.9715 1.7822 0.5899 31 1 5.7671 1.5542 -1.8708 32 1 5.6698 3.3246 -2.0267 33 1 7.7818 2.4218 -3.4364 34 1 10.1681 2.3476 -5.7687 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000286121680.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:23 Heat of formation + Delta-G solvation = -128.952806 kcal Electronic energy + Delta-G solvation = -19426.442454 eV Core-core repulsion = 16044.853561 eV Total energy + Delta-G solvation = -3381.588893 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.82132 -41.01021 -40.20893 -38.67845 -36.10152 -34.64012 -33.28145 -31.24976 -30.58271 -28.21516 -27.27379 -25.17960 -23.52701 -22.19866 -20.94691 -19.88232 -19.07484 -18.10020 -17.98882 -17.62992 -17.13813 -16.58083 -16.18258 -16.03985 -15.82260 -15.65765 -15.45267 -14.89279 -14.38573 -14.16390 -13.69389 -13.56405 -13.49591 -12.99562 -12.91576 -12.86841 -12.46570 -12.43127 -12.12689 -12.02231 -11.94153 -11.90401 -11.53913 -10.43794 -10.04779 -9.72450 -9.20519 -8.48538 -5.98259 0.10901 0.27653 1.37159 1.40829 1.54302 2.01296 2.20045 2.29266 2.57122 3.17105 3.18568 3.29364 3.72931 3.87348 4.06391 4.13285 4.14070 4.28201 4.40838 4.41116 4.44101 4.54729 4.73476 4.74098 4.90996 5.03810 5.09984 5.19704 5.34437 5.39244 5.48044 5.70159 5.97165 6.33279 6.55570 7.08811 7.52109 8.06790 8.68979 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.037464 B = 0.003579 C = 0.003489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.205910 B = 7821.321335 C = 8022.177302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.340 6.340 3 C 0.085 3.915 4 C -0.181 4.181 5 C -0.074 4.074 6 C -0.128 4.128 7 C -0.082 4.082 8 C -0.053 4.053 9 C -0.110 4.110 10 C 0.437 3.563 11 O -0.634 6.634 12 N -0.571 5.571 13 C -0.339 4.339 14 H 0.080 0.920 15 C -0.013 4.013 16 N -0.920 5.920 17 Si 0.996 3.004 18 H -0.271 1.271 19 H -0.268 1.268 20 H -0.271 1.271 21 C 0.030 3.970 22 F -0.153 7.153 23 H 0.072 0.928 24 H 0.115 0.885 25 H 0.073 0.927 26 H 0.170 0.830 27 H 0.172 0.828 28 H 0.153 0.847 29 H 0.087 0.913 30 H 0.055 0.945 31 H 0.083 0.917 32 H 0.108 0.892 33 H 0.397 0.603 34 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.317 1.423 6.202 23.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.254 6.254 3 C 0.039 3.961 4 C -0.199 4.199 5 C -0.092 4.092 6 C -0.146 4.146 7 C -0.083 4.083 8 C -0.090 4.090 9 C -0.150 4.150 10 C 0.226 3.774 11 O -0.523 6.523 12 N -0.207 5.207 13 C -0.468 4.468 14 H 0.098 0.902 15 C -0.213 4.213 16 N -0.561 5.561 17 Si 0.819 3.181 18 H -0.197 1.197 19 H -0.193 1.193 20 H -0.196 1.196 21 C 0.011 3.989 22 F -0.132 7.132 23 H 0.091 0.909 24 H 0.134 0.866 25 H 0.092 0.908 26 H 0.187 0.813 27 H 0.189 0.811 28 H 0.171 0.829 29 H 0.105 0.895 30 H 0.074 0.926 31 H 0.101 0.899 32 H 0.126 0.874 33 H 0.231 0.769 34 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -21.756 1.245 6.675 22.791 hybrid contribution 0.911 -0.536 -0.547 1.190 sum -20.844 0.709 6.129 21.738 Atomic orbital electron populations 1.23438 0.75560 1.05792 1.02923 1.86113 1.24298 1.26203 1.88797 1.19167 0.90125 0.86870 0.99952 1.21512 1.01632 0.90536 1.06240 1.21437 0.93840 0.98459 0.95490 1.21224 0.94447 0.97450 1.01454 1.19851 0.95942 0.91747 1.00733 1.20083 0.89417 1.03752 0.95797 1.21374 0.90518 1.04374 0.98721 1.20894 0.90814 0.82186 0.83550 1.90476 1.71878 1.57159 1.32756 1.41992 1.06895 1.63943 1.07906 1.19732 0.82846 1.49616 0.94641 0.90193 1.26103 1.05222 0.96055 0.93911 1.69678 1.38372 1.49598 0.98423 0.84895 0.76476 0.78716 0.78040 1.19689 1.19286 1.19573 1.17313 0.87028 0.82533 1.12042 1.91431 1.77183 1.49965 1.94608 0.90914 0.86636 0.90812 0.81252 0.81085 0.82925 0.89467 0.92587 0.89889 0.87425 0.76940 0.91184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.81 113.37 1.11 1.31 16 2 O -0.34 -8.14 10.36 -93.08 -0.96 -9.10 16 3 C 0.08 2.10 6.69 22.53 0.15 2.25 16 4 C -0.18 -2.99 9.04 22.35 0.20 -2.79 16 5 C -0.07 -1.13 10.04 22.26 0.22 -0.91 16 6 C -0.13 -2.64 9.68 22.28 0.22 -2.43 16 7 C -0.08 -2.32 5.14 -19.84 -0.10 -2.42 16 8 C -0.05 -1.81 4.41 29.85 0.13 -1.68 16 9 C -0.11 -4.11 5.68 29.85 0.17 -3.94 16 10 C 0.44 21.97 7.78 87.66 0.68 22.65 16 11 O -0.63 -36.52 15.56 -3.07 -0.05 -36.57 16 12 N -0.57 -30.77 5.29 -306.97 -1.62 -32.40 16 13 C -0.34 -19.90 9.68 84.04 0.81 -19.08 16 14 H 0.08 4.97 7.16 -2.91 -0.02 4.95 16 15 C -0.01 -0.72 5.50 84.93 0.47 -0.25 16 16 N -0.92 -50.89 13.05 21.66 0.28 -50.60 16 17 Si 1.00 43.76 29.55 68.60 2.03 45.79 16 18 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 19 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 20 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 21 C 0.03 0.94 7.25 22.46 0.16 1.10 16 22 F -0.15 -5.63 16.41 44.97 0.74 -4.89 16 23 H 0.07 0.62 7.66 -2.39 -0.02 0.60 16 24 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 25 H 0.07 0.60 7.66 -2.39 -0.02 0.58 16 26 H 0.17 1.53 6.30 -2.91 -0.02 1.51 16 27 H 0.17 1.26 8.06 -2.91 -0.02 1.23 16 28 H 0.15 2.58 8.06 -2.91 -0.02 2.56 16 29 H 0.09 2.92 8.01 -2.39 -0.02 2.90 16 30 H 0.06 2.20 7.74 -2.38 -0.02 2.18 16 31 H 0.08 3.04 8.14 -2.39 -0.02 3.02 16 32 H 0.11 3.42 8.14 -2.39 -0.02 3.40 16 33 H 0.40 20.35 7.90 -92.71 -0.73 19.62 16 34 H 0.28 14.35 8.31 -92.71 -0.77 13.58 16 Total: -1.00 -74.38 303.52 5.04 -69.34 By element: Atomic # 1 Polarization: 24.21 SS G_CDS: 0.40 Total: 24.61 kcal Atomic # 6 Polarization: -10.41 SS G_CDS: 4.23 Total: -6.18 kcal Atomic # 7 Polarization: -81.66 SS G_CDS: -1.34 Total: -83.00 kcal Atomic # 8 Polarization: -44.66 SS G_CDS: -1.01 Total: -45.67 kcal Atomic # 9 Polarization: -5.63 SS G_CDS: 0.74 Total: -4.89 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Total: -74.38 5.04 -69.34 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286121680.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.614 kcal (2) G-P(sol) polarization free energy of solvation -74.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds