Wall clock time and date at job start Mon Mar 30 2020 00:27:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09000 * 109.47789 * 2 1 4 4 C 1.53000 * 109.46871 * 240.00354 * 2 1 3 5 5 F 1.39902 * 109.47449 * 180.02562 * 4 2 1 6 6 N 1.46504 * 109.47415 * 120.00667 * 2 1 3 7 7 C 1.34776 * 120.00025 * 274.99955 * 6 2 1 8 8 O 1.21592 * 119.99890 * 359.97438 * 7 6 2 9 9 C 1.47526 * 120.00099 * 179.97438 * 7 6 2 10 10 C 1.39671 * 120.19693 * 359.97438 * 9 7 6 11 11 C 1.37831 * 119.92038 * 179.97438 * 10 9 7 12 12 C 1.38575 * 120.32074 * 0.02562 * 11 10 9 13 13 C 1.38026 * 120.40117 * 359.97165 * 12 11 10 14 14 C 1.38835 * 120.07467 * 359.75136 * 13 12 11 15 15 O 1.35519 * 120.16167 * 180.27205 * 14 13 12 16 16 C 1.34814 * 116.99833 * 354.39789 * 15 14 13 17 17 H 1.07999 * 120.00257 * 5.06177 * 16 15 14 18 18 C 1.38702 * 119.99863 * 185.06323 * 16 15 14 19 19 N 1.31526 * 119.99751 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00289 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.46754 * 0.02562 * 20 18 16 22 22 H 1.48496 * 109.46975 * 120.00005 * 20 18 16 23 23 H 1.48494 * 109.46979 * 240.00292 * 20 18 16 24 24 H 1.09006 * 109.47585 * 59.98895 * 1 2 3 25 25 H 1.09000 * 109.47789 * 179.97438 * 1 2 3 26 26 H 1.09010 * 109.46898 * 299.99867 * 1 2 3 27 27 H 1.09001 * 109.47310 * 300.00066 * 4 2 1 28 28 H 1.09007 * 109.47091 * 60.00316 * 4 2 1 29 29 H 0.97001 * 119.99473 * 94.99233 * 6 2 1 30 30 H 1.08000 * 120.04067 * 359.97438 * 10 9 7 31 31 H 1.07994 * 119.83787 * 179.97438 * 11 10 9 32 32 H 1.07999 * 119.79658 * 179.97438 * 12 11 10 33 33 H 1.08004 * 119.95747 * 180.02562 * 13 12 11 34 34 H 0.96996 * 119.99881 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 9 3.4389 -0.7218 -1.2491 6 7 2.0183 -0.6908 1.1961 7 6 2.1471 -0.0185 2.3571 8 8 1.8583 1.1613 2.4117 9 6 2.6384 -0.7142 3.5617 10 6 2.9708 -2.0696 3.5038 11 6 3.4297 -2.7138 4.6325 12 6 3.5630 -2.0234 5.8266 13 6 3.2384 -0.6837 5.8989 14 6 2.7800 -0.0171 4.7706 15 8 2.4660 1.2995 4.8382 16 6 2.5095 1.8773 6.0555 17 1 2.8637 1.3159 6.9074 18 6 2.0993 3.1928 6.2137 19 7 1.6675 3.8763 5.1763 20 14 2.1589 3.9933 7.9005 21 1 2.6791 3.0187 8.8928 22 1 3.0532 5.1778 7.8549 23 1 0.7921 4.4198 8.2944 24 1 -0.3634 0.5140 -0.8899 25 1 -0.3635 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8901 27 1 1.6765 -1.7489 -1.2494 28 1 1.6765 -0.2072 -2.1393 29 1 2.2489 -1.6319 1.1524 30 1 2.8683 -2.6122 2.5756 31 1 3.6859 -3.7619 4.5863 32 1 3.9230 -2.5366 6.7060 33 1 3.3454 -0.1525 6.8331 34 1 1.3802 4.7961 5.2870 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000288293660.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:27:46 Heat of formation + Delta-G solvation = -89.552970 kcal Electronic energy + Delta-G solvation = -20147.466161 eV Core-core repulsion = 16767.585774 eV Total energy + Delta-G solvation = -3379.880387 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -47.60861 -39.61118 -38.20248 -36.33805 -35.15097 -32.33517 -31.60118 -29.67523 -28.90003 -26.51986 -25.38447 -23.41872 -21.78873 -20.89601 -19.93481 -18.03671 -17.66645 -16.47408 -16.21501 -15.87638 -15.20765 -14.77102 -14.49045 -14.32428 -14.11943 -13.95655 -13.76800 -13.35559 -12.82528 -12.60133 -12.49763 -12.12654 -11.71175 -11.68456 -11.32148 -11.21165 -11.11594 -10.90772 -10.80489 -10.64297 -10.43566 -9.55814 -8.87890 -8.84139 -8.60884 -8.26267 -7.30036 -6.43803 -4.03610 1.72712 2.32983 3.12401 3.13073 3.18920 3.59629 3.75215 3.94162 4.44159 4.63869 4.80042 4.84927 5.07702 5.14281 5.20024 5.40555 5.48457 5.52444 5.69359 5.73222 5.74961 6.00032 6.13172 6.17364 6.34151 6.57475 6.69912 6.91809 6.94194 7.07355 7.24717 7.30284 7.70484 7.92669 8.11046 8.95971 9.10008 9.68634 10.70125 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.018911 B = 0.006012 C = 0.004821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.246506 B = 4655.936940 C = 5806.427725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.114 3.886 3 H 0.097 0.903 4 C 0.056 3.944 5 F -0.214 7.214 6 N -0.738 5.738 7 C 0.557 3.443 8 O -0.500 6.500 9 C -0.227 4.227 10 C -0.037 4.037 11 C -0.231 4.231 12 C -0.051 4.051 13 C -0.238 4.238 14 C 0.190 3.810 15 O -0.124 6.124 16 C -0.403 4.403 17 H 0.094 0.906 18 C 0.044 3.956 19 N -0.833 5.833 20 Si 0.941 3.059 21 H -0.266 1.266 22 H -0.275 1.275 23 H -0.275 1.275 24 H 0.063 0.937 25 H 0.056 0.944 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.086 0.914 29 H 0.392 0.608 30 H 0.111 0.889 31 H 0.109 0.891 32 H 0.110 0.890 33 H 0.132 0.868 34 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.473 -10.812 -7.451 13.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.008 3.992 3 H 0.115 0.885 4 C 0.001 3.999 5 F -0.195 7.195 6 N -0.394 5.394 7 C 0.347 3.653 8 O -0.374 6.374 9 C -0.232 4.232 10 C -0.056 4.056 11 C -0.250 4.250 12 C -0.069 4.069 13 C -0.257 4.257 14 C 0.130 3.870 15 O -0.022 6.022 16 C -0.479 4.479 17 H 0.112 0.888 18 C -0.164 4.164 19 N -0.464 5.464 20 Si 0.766 3.234 21 H -0.190 1.190 22 H -0.200 1.200 23 H -0.200 1.200 24 H 0.082 0.918 25 H 0.075 0.925 26 H 0.092 0.908 27 H 0.095 0.905 28 H 0.104 0.896 29 H 0.227 0.773 30 H 0.129 0.871 31 H 0.127 0.873 32 H 0.128 0.872 33 H 0.149 0.851 34 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.828 -9.443 -7.632 12.170 hybrid contribution 0.239 -0.217 0.858 0.917 sum -0.588 -9.660 -6.774 11.813 Atomic orbital electron populations 1.22113 0.94480 1.02141 1.03293 1.21403 0.94863 0.98738 0.84216 0.88455 1.22348 0.76128 1.02314 0.99127 1.92795 1.30864 1.98028 1.97778 1.45875 1.70566 1.13578 1.09379 1.18222 0.77872 0.86755 0.82471 1.90943 1.47727 1.14676 1.84035 1.18838 1.17201 0.94160 0.92994 1.20762 0.95171 0.92271 0.97434 1.20463 1.11349 0.99488 0.93679 1.20898 0.95441 0.93691 0.96903 1.21162 1.09568 0.95507 0.99493 1.19273 0.90681 0.85087 0.91954 1.84173 1.70860 1.15599 1.31616 1.21546 1.45430 0.96421 0.84505 0.88830 1.25393 0.95827 0.95642 0.99508 1.70142 1.36823 1.09944 1.29510 0.85654 0.78408 0.79298 0.80080 1.18974 1.20027 1.20026 0.91777 0.92470 0.90840 0.90542 0.89616 0.77332 0.87081 0.87270 0.87179 0.85064 0.91941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.01 9.48 37.15 0.35 -1.66 16 2 C 0.11 1.59 2.94 -67.93 -0.20 1.40 16 3 H 0.10 1.64 7.58 -51.93 -0.39 1.25 16 4 C 0.06 0.58 7.05 37.16 0.26 0.84 16 5 F -0.21 -2.93 17.28 2.25 0.04 -2.89 16 6 N -0.74 -12.04 4.95 -54.85 -0.27 -12.32 16 7 C 0.56 12.36 7.73 -12.47 -0.10 12.26 16 8 O -0.50 -13.69 14.83 -16.57 -0.25 -13.93 16 9 C -0.23 -5.00 5.89 -104.81 -0.62 -5.62 16 10 C -0.04 -0.65 9.54 -39.20 -0.37 -1.03 16 11 C -0.23 -3.83 10.03 -39.61 -0.40 -4.23 16 12 C -0.05 -0.91 10.03 -39.53 -0.40 -1.30 16 13 C -0.24 -5.17 9.16 -39.44 -0.36 -5.53 16 14 C 0.19 4.76 6.66 -38.60 -0.26 4.51 16 15 O -0.12 -3.70 7.84 -21.06 -0.16 -3.86 16 16 C -0.40 -11.48 9.49 30.90 0.29 -11.19 16 17 H 0.09 2.42 5.21 -52.49 -0.27 2.15 16 18 C 0.04 1.23 5.49 -17.51 -0.10 1.13 16 19 N -0.83 -25.20 13.67 55.48 0.76 -24.44 16 20 Si 0.94 20.62 29.55 -169.99 -5.02 15.59 16 21 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 22 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 23 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 24 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 25 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.07 1.18 8.14 -51.92 -0.42 0.75 16 27 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.39 5.21 6.63 -40.82 -0.27 4.93 16 30 H 0.11 1.50 6.40 -52.49 -0.34 1.16 16 31 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 32 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 33 H 0.13 2.81 5.64 -52.48 -0.30 2.51 16 34 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 299.51 15.07 4.51 4.51 Total: -1.00 -35.01 299.51 -5.95 -40.95 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -3.66 Total: 6.81 kcal Atomic # 6 Polarization: -8.53 SS G_CDS: -1.89 Total: -10.42 kcal Atomic # 7 Polarization: -37.24 SS G_CDS: 0.49 Total: -36.76 kcal Atomic # 8 Polarization: -17.39 SS G_CDS: -0.41 Total: -17.80 kcal Atomic # 9 Polarization: -2.93 SS G_CDS: 0.04 Total: -2.89 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -35.01 -5.95 -40.95 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000288293660.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.598 kcal (2) G-P(sol) polarization free energy of solvation -35.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds