Wall clock time and date at job start Mon Mar 30 2020 00:27:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09000 * 109.47789 * 2 1 4 4 C 1.53000 * 109.46871 * 240.00354 * 2 1 3 5 5 F 1.39902 * 109.47449 * 180.02562 * 4 2 1 6 6 N 1.46504 * 109.47415 * 120.00667 * 2 1 3 7 7 C 1.34776 * 120.00025 * 274.99955 * 6 2 1 8 8 O 1.21592 * 119.99890 * 359.97438 * 7 6 2 9 9 C 1.47526 * 120.00099 * 179.97438 * 7 6 2 10 10 C 1.39671 * 120.19693 * 359.97438 * 9 7 6 11 11 C 1.37831 * 119.92038 * 179.97438 * 10 9 7 12 12 C 1.38575 * 120.32074 * 0.02562 * 11 10 9 13 13 C 1.38026 * 120.40117 * 359.97165 * 12 11 10 14 14 C 1.38835 * 120.07467 * 359.75136 * 13 12 11 15 15 O 1.35519 * 120.16167 * 180.27205 * 14 13 12 16 16 C 1.34814 * 116.99833 * 354.39789 * 15 14 13 17 17 H 1.07999 * 120.00257 * 5.06177 * 16 15 14 18 18 C 1.38702 * 119.99863 * 185.06323 * 16 15 14 19 19 N 1.31526 * 119.99751 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00289 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.46754 * 0.02562 * 20 18 16 22 22 H 1.48496 * 109.46975 * 120.00005 * 20 18 16 23 23 H 1.48494 * 109.46979 * 240.00292 * 20 18 16 24 24 H 1.09006 * 109.47585 * 59.98895 * 1 2 3 25 25 H 1.09000 * 109.47789 * 179.97438 * 1 2 3 26 26 H 1.09010 * 109.46898 * 299.99867 * 1 2 3 27 27 H 1.09001 * 109.47310 * 300.00066 * 4 2 1 28 28 H 1.09007 * 109.47091 * 60.00316 * 4 2 1 29 29 H 0.97001 * 119.99473 * 94.99233 * 6 2 1 30 30 H 1.08000 * 120.04067 * 359.97438 * 10 9 7 31 31 H 1.07994 * 119.83787 * 179.97438 * 11 10 9 32 32 H 1.07999 * 119.79658 * 179.97438 * 12 11 10 33 33 H 1.08004 * 119.95747 * 180.02562 * 13 12 11 34 34 H 0.96996 * 119.99881 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 9 3.4389 -0.7218 -1.2491 6 7 2.0183 -0.6908 1.1961 7 6 2.1471 -0.0185 2.3571 8 8 1.8583 1.1613 2.4117 9 6 2.6384 -0.7142 3.5617 10 6 2.9708 -2.0696 3.5038 11 6 3.4297 -2.7138 4.6325 12 6 3.5630 -2.0234 5.8266 13 6 3.2384 -0.6837 5.8989 14 6 2.7800 -0.0171 4.7706 15 8 2.4660 1.2995 4.8382 16 6 2.5095 1.8773 6.0555 17 1 2.8637 1.3159 6.9074 18 6 2.0993 3.1928 6.2137 19 7 1.6675 3.8763 5.1763 20 14 2.1589 3.9933 7.9005 21 1 2.6791 3.0187 8.8928 22 1 3.0532 5.1778 7.8549 23 1 0.7921 4.4198 8.2944 24 1 -0.3634 0.5140 -0.8899 25 1 -0.3635 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8901 27 1 1.6765 -1.7489 -1.2494 28 1 1.6765 -0.2072 -2.1393 29 1 2.2489 -1.6319 1.1524 30 1 2.8683 -2.6122 2.5756 31 1 3.6859 -3.7619 4.5863 32 1 3.9230 -2.5366 6.7060 33 1 3.3454 -0.1525 6.8331 34 1 1.3802 4.7961 5.2870 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000288293660.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:27:46 Heat of formation + Delta-G solvation = -114.779324 kcal Electronic energy + Delta-G solvation = -20148.560058 eV Core-core repulsion = 16767.585774 eV Total energy + Delta-G solvation = -3380.974284 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -48.58249 -41.30213 -39.90342 -38.04209 -36.61551 -34.33374 -33.10379 -31.11706 -30.56606 -27.47460 -27.36825 -24.95531 -23.35341 -22.26540 -21.50377 -19.85298 -19.33121 -17.98105 -17.62128 -16.87113 -16.44595 -16.39638 -16.08874 -15.93039 -15.78684 -15.34809 -15.23732 -15.09630 -14.42760 -14.22971 -13.79634 -13.55645 -13.38584 -13.01050 -12.76617 -12.67281 -12.54532 -12.35114 -12.12211 -12.08881 -11.70976 -11.42187 -10.84967 -10.61009 -10.14040 -9.79815 -9.04355 -8.45272 -6.16336 0.11898 0.72143 1.31948 1.42761 1.52048 2.09331 2.15288 2.22522 2.87162 3.22135 3.43132 3.46232 3.92627 3.97504 3.98861 4.07765 4.27060 4.27982 4.44248 4.51771 4.61214 4.71148 4.81764 4.94271 5.00643 5.07528 5.14139 5.26906 5.47813 5.55922 5.60554 5.69048 5.95697 6.16640 6.67204 6.94023 7.48131 7.79957 8.75519 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.018911 B = 0.006012 C = 0.004821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.246506 B = 4655.936940 C = 5806.427725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.104 3.896 3 H 0.056 0.944 4 C 0.062 3.938 5 F -0.233 7.233 6 N -0.714 5.714 7 C 0.549 3.451 8 O -0.568 6.568 9 C -0.247 4.247 10 C -0.030 4.030 11 C -0.200 4.200 12 C -0.040 4.040 13 C -0.258 4.258 14 C 0.148 3.852 15 O -0.190 6.190 16 C -0.427 4.427 17 H 0.107 0.893 18 C -0.024 4.024 19 N -0.906 5.906 20 Si 1.024 2.976 21 H -0.245 1.245 22 H -0.269 1.269 23 H -0.268 1.268 24 H 0.093 0.907 25 H 0.086 0.914 26 H 0.025 0.975 27 H 0.117 0.883 28 H 0.118 0.882 29 H 0.411 0.589 30 H 0.160 0.840 31 H 0.165 0.835 32 H 0.154 0.846 33 H 0.123 0.877 34 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.224 -15.512 -7.842 17.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.002 4.002 3 H 0.074 0.926 4 C 0.007 3.993 5 F -0.215 7.215 6 N -0.370 5.370 7 C 0.339 3.661 8 O -0.446 6.446 9 C -0.252 4.252 10 C -0.048 4.048 11 C -0.219 4.219 12 C -0.058 4.058 13 C -0.278 4.278 14 C 0.093 3.907 15 O -0.092 6.092 16 C -0.503 4.503 17 H 0.124 0.876 18 C -0.223 4.223 19 N -0.541 5.541 20 Si 0.842 3.158 21 H -0.168 1.168 22 H -0.194 1.194 23 H -0.193 1.193 24 H 0.111 0.889 25 H 0.105 0.895 26 H 0.044 0.956 27 H 0.135 0.865 28 H 0.136 0.864 29 H 0.249 0.751 30 H 0.177 0.823 31 H 0.183 0.817 32 H 0.172 0.828 33 H 0.141 0.859 34 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.104 -14.275 -8.061 16.394 hybrid contribution 0.104 0.765 0.799 1.111 sum 0.001 -13.510 -7.262 15.338 Atomic orbital electron populations 1.22033 0.93003 1.03744 1.02404 1.21652 0.96116 0.97292 0.85102 0.92587 1.22543 0.74695 1.04442 0.97577 1.92759 1.32795 1.98178 1.97741 1.45664 1.68726 1.14204 1.08403 1.18528 0.77269 0.86148 0.84132 1.90923 1.50768 1.17705 1.85248 1.19331 1.17463 0.96265 0.92118 1.21310 0.93278 0.90044 1.00170 1.21186 1.06916 1.01697 0.92065 1.21442 0.93188 0.91814 0.99357 1.21307 1.10675 0.97512 0.98265 1.20094 0.91436 0.84682 0.94462 1.84179 1.74764 1.18082 1.32194 1.22081 1.45892 0.97217 0.85110 0.87598 1.26786 0.95152 0.96037 1.04287 1.70335 1.40642 1.10482 1.32682 0.84479 0.78690 0.78239 0.74367 1.16843 1.19390 1.19331 0.88858 0.89474 0.95598 0.86489 0.86394 0.75090 0.82262 0.81746 0.82792 0.85922 0.92057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.70 9.48 71.98 0.68 -3.02 16 2 C 0.10 2.86 2.94 44.99 0.13 2.99 16 3 H 0.06 2.03 7.58 -2.39 -0.02 2.01 16 4 C 0.06 1.07 7.05 71.98 0.51 1.58 16 5 F -0.23 -5.87 17.28 44.97 0.78 -5.09 16 6 N -0.71 -22.78 4.95 -445.71 -2.21 -24.99 16 7 C 0.55 25.44 7.73 86.69 0.67 26.11 16 8 O -0.57 -34.03 14.83 16.89 0.25 -33.78 16 9 C -0.25 -10.97 5.89 -19.99 -0.12 -11.09 16 10 C -0.03 -0.91 9.54 22.52 0.21 -0.70 16 11 C -0.20 -5.42 10.03 22.25 0.22 -5.20 16 12 C -0.04 -1.26 10.03 22.30 0.22 -1.04 16 13 C -0.26 -11.23 9.16 22.36 0.20 -11.03 16 14 C 0.15 7.80 6.66 22.91 0.15 7.95 16 15 O -0.19 -12.28 7.84 0.84 0.01 -12.27 16 16 C -0.43 -26.21 9.49 67.93 0.64 -25.56 16 17 H 0.11 5.84 5.21 -2.91 -0.02 5.82 16 18 C -0.02 -1.42 5.49 84.85 0.47 -0.95 16 19 N -0.91 -59.88 13.67 21.62 0.30 -59.58 16 20 Si 1.02 44.75 29.55 68.60 2.03 46.78 16 21 H -0.25 -9.69 7.11 99.48 0.71 -8.98 16 22 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 23 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 24 H 0.09 1.69 8.14 -2.38 -0.02 1.67 16 25 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 26 H 0.02 0.86 8.14 -2.38 -0.02 0.84 16 27 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.12 1.36 8.14 -2.38 -0.02 1.34 16 29 H 0.41 9.53 6.63 -92.71 -0.61 8.91 16 30 H 0.16 3.30 6.40 -2.91 -0.02 3.28 16 31 H 0.17 2.87 8.06 -2.91 -0.02 2.85 16 32 H 0.15 3.56 8.06 -2.91 -0.02 3.54 16 33 H 0.12 5.41 5.64 -2.91 -0.02 5.39 16 34 H 0.27 16.31 8.31 -92.71 -0.77 15.54 16 Total: -1.00 -90.78 299.51 5.68 -85.11 By element: Atomic # 1 Polarization: 23.26 SS G_CDS: 0.52 Total: 23.78 kcal Atomic # 6 Polarization: -23.95 SS G_CDS: 4.00 Total: -19.95 kcal Atomic # 7 Polarization: -82.66 SS G_CDS: -1.91 Total: -84.57 kcal Atomic # 8 Polarization: -46.31 SS G_CDS: 0.26 Total: -46.05 kcal Atomic # 9 Polarization: -5.87 SS G_CDS: 0.78 Total: -5.09 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -90.78 5.68 -85.11 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000288293660.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.674 kcal (2) G-P(sol) polarization free energy of solvation -90.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds