Wall clock time and date at job start Mon Mar 30 2020 00:27:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.47088 * 2 1 4 4 C 1.53005 * 109.47170 * 119.99487 * 2 1 3 5 5 F 1.39900 * 109.46936 * 179.97438 * 4 2 1 6 6 N 1.46496 * 109.47130 * 239.99861 * 2 1 3 7 7 C 1.34780 * 119.99875 * 85.00177 * 6 2 1 8 8 O 1.21590 * 120.00046 * 359.97438 * 7 6 2 9 9 C 1.47539 * 119.99531 * 180.02562 * 7 6 2 10 10 C 1.39666 * 120.19911 * 359.97105 * 9 7 6 11 11 C 1.37826 * 119.91846 * 180.02562 * 10 9 7 12 12 C 1.38580 * 120.32412 * 0.02562 * 11 10 9 13 13 C 1.38025 * 120.40075 * 0.02562 * 12 11 10 14 14 C 1.38831 * 120.07205 * 359.97438 * 13 12 11 15 15 O 1.35518 * 120.16245 * 179.97438 * 14 13 12 16 16 C 1.34820 * 116.99988 * 354.40002 * 15 14 13 17 17 H 1.07997 * 119.99738 * 5.06751 * 16 15 14 18 18 C 1.38700 * 120.00183 * 185.05758 * 16 15 14 19 19 N 1.31525 * 119.99824 * 0.02562 * 18 16 15 20 20 Si 1.86793 * 120.00060 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46953 * 60.00415 * 20 18 16 22 22 H 1.48497 * 109.47233 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47475 * 300.00835 * 20 18 16 24 24 H 1.08999 * 109.46911 * 60.00203 * 1 2 3 25 25 H 1.08997 * 109.47371 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47129 * 300.00406 * 1 2 3 27 27 H 1.08996 * 109.46957 * 300.00579 * 4 2 1 28 28 H 1.09005 * 109.46696 * 60.00273 * 4 2 1 29 29 H 0.97004 * 120.00297 * 264.99604 * 6 2 1 30 30 H 1.07997 * 120.03654 * 0.04911 * 10 9 7 31 31 H 1.08001 * 119.84001 * 180.02562 * 11 10 9 32 32 H 1.07999 * 119.79696 * 180.27254 * 12 11 10 33 33 H 1.07998 * 119.96126 * 180.02562 * 13 12 11 34 34 H 0.97002 * 119.99712 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 9 3.4390 -0.7216 1.2490 6 7 2.0183 -0.6906 -1.1961 7 6 2.1471 -0.0182 -2.3571 8 8 1.8575 1.1614 -2.4118 9 6 2.6383 -0.7140 -3.5618 10 6 2.9717 -2.0690 -3.5037 11 6 3.4306 -2.7131 -4.6325 12 6 3.5638 -2.0226 -5.8266 13 6 3.2392 -0.6830 -5.8988 14 6 2.7754 -0.0179 -4.7719 15 8 2.4566 1.2975 -4.8406 16 6 2.7213 1.9316 -6.0006 17 1 3.0912 1.3743 -6.8484 18 6 2.5183 3.2997 -6.1050 19 7 2.0681 3.9784 -5.0723 20 14 2.8857 4.1784 -7.7119 21 1 2.0423 3.6071 -8.7925 22 1 2.5881 5.6257 -7.5640 23 1 4.3191 4.0009 -8.0568 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.6766 -0.2073 2.1392 28 1 1.6767 -1.7489 1.2493 29 1 2.2491 -1.6318 -1.1526 30 1 2.8697 -2.6115 -2.5754 31 1 3.6876 -3.7611 -4.5862 32 1 3.9199 -2.5368 -6.7070 33 1 3.3453 -0.1520 -6.8332 34 1 1.9265 4.9353 -5.1453 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000288293663.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:27:49 Heat of formation + Delta-G solvation = -114.669014 kcal Electronic energy + Delta-G solvation = -20148.137349 eV Core-core repulsion = 16767.167848 eV Total energy + Delta-G solvation = -3380.969501 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -48.58384 -41.30115 -39.90289 -38.04091 -36.61540 -34.33376 -33.10301 -31.11647 -30.56489 -27.47411 -27.36534 -24.95465 -23.35249 -22.26481 -21.50361 -19.85014 -19.32882 -17.97798 -17.62010 -16.87377 -16.44586 -16.38918 -16.12312 -15.90389 -15.80227 -15.31451 -15.23638 -15.12382 -14.43012 -14.21068 -13.79692 -13.55398 -13.38820 -12.98156 -12.76564 -12.67605 -12.50303 -12.37707 -12.16536 -12.10429 -11.70913 -11.42923 -10.82823 -10.61105 -10.13982 -9.79784 -9.04274 -8.44971 -6.16222 0.11975 0.72429 1.31790 1.45036 1.49939 2.09267 2.15785 2.22572 2.87316 3.21917 3.43188 3.46599 3.92730 3.97517 3.98841 4.07819 4.27051 4.28029 4.44316 4.51788 4.61309 4.71288 4.81742 4.94338 5.00723 5.07119 5.14160 5.26995 5.47830 5.55978 5.60592 5.69078 5.95460 6.16733 6.67172 6.94060 7.48125 7.79882 8.75398 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.018673 B = 0.006024 C = 0.004847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.140104 B = 4647.190312 C = 5775.141630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.103 3.897 3 H 0.055 0.945 4 C 0.062 3.938 5 F -0.234 7.234 6 N -0.714 5.714 7 C 0.549 3.451 8 O -0.568 6.568 9 C -0.247 4.247 10 C -0.030 4.030 11 C -0.201 4.201 12 C -0.040 4.040 13 C -0.259 4.259 14 C 0.148 3.852 15 O -0.189 6.189 16 C -0.429 4.429 17 H 0.107 0.893 18 C -0.023 4.023 19 N -0.906 5.906 20 Si 1.023 2.977 21 H -0.253 1.253 22 H -0.273 1.273 23 H -0.255 1.255 24 H 0.025 0.975 25 H 0.087 0.913 26 H 0.093 0.907 27 H 0.118 0.882 28 H 0.117 0.883 29 H 0.411 0.589 30 H 0.160 0.840 31 H 0.165 0.835 32 H 0.155 0.845 33 H 0.123 0.877 34 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.012 -15.517 7.768 17.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.002 4.002 3 H 0.074 0.926 4 C 0.007 3.993 5 F -0.215 7.215 6 N -0.370 5.370 7 C 0.339 3.661 8 O -0.446 6.446 9 C -0.252 4.252 10 C -0.048 4.048 11 C -0.219 4.219 12 C -0.058 4.058 13 C -0.278 4.278 14 C 0.093 3.907 15 O -0.092 6.092 16 C -0.505 4.505 17 H 0.124 0.876 18 C -0.222 4.222 19 N -0.541 5.541 20 Si 0.841 3.159 21 H -0.177 1.177 22 H -0.198 1.198 23 H -0.179 1.179 24 H 0.045 0.955 25 H 0.105 0.895 26 H 0.111 0.889 27 H 0.136 0.864 28 H 0.135 0.865 29 H 0.249 0.751 30 H 0.177 0.823 31 H 0.182 0.818 32 H 0.172 0.828 33 H 0.141 0.859 34 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.361 -14.276 7.988 16.363 hybrid contribution 0.191 0.765 -0.785 1.113 sum -0.170 -13.511 7.203 15.312 Atomic orbital electron populations 1.22030 0.92939 1.03760 1.02426 1.21656 0.96163 0.97269 0.85098 0.92638 1.22546 0.74687 1.04452 0.97591 1.92759 1.32816 1.98179 1.97742 1.45663 1.68729 1.14192 1.08414 1.18531 0.77280 0.86125 0.84139 1.90922 1.50748 1.17684 1.85292 1.19332 1.17700 0.96547 0.91621 1.21305 0.93270 0.90044 1.00175 1.21186 1.06894 1.01697 0.92117 1.21444 0.93190 0.91780 0.99379 1.21309 1.10875 0.97447 0.98158 1.20098 0.91154 0.85220 0.94227 1.84178 1.70083 1.17852 1.37050 1.22006 1.46836 0.92166 0.89475 0.87615 1.26785 0.95808 0.96123 1.03494 1.70325 1.42613 1.08562 1.32641 0.84607 0.79738 0.76769 0.74740 1.17697 1.19774 1.17885 0.95539 0.89458 0.88861 0.86398 0.86468 0.75091 0.82269 0.81751 0.82779 0.85878 0.92041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.67 9.48 71.98 0.68 -2.98 16 2 C 0.10 2.86 2.94 44.99 0.13 2.99 16 3 H 0.06 2.02 7.58 -2.38 -0.02 2.00 16 4 C 0.06 1.07 7.05 71.98 0.51 1.58 16 5 F -0.23 -5.92 17.28 44.97 0.78 -5.15 16 6 N -0.71 -22.80 4.95 -445.69 -2.21 -25.01 16 7 C 0.55 25.46 7.73 86.70 0.67 26.13 16 8 O -0.57 -34.04 14.83 16.90 0.25 -33.79 16 9 C -0.25 -10.99 5.89 -19.98 -0.12 -11.11 16 10 C -0.03 -0.91 9.54 22.52 0.21 -0.70 16 11 C -0.20 -5.44 10.03 22.25 0.22 -5.21 16 12 C -0.04 -1.26 10.03 22.30 0.22 -1.03 16 13 C -0.26 -11.24 9.16 22.36 0.20 -11.04 16 14 C 0.15 7.79 6.66 22.91 0.15 7.95 16 15 O -0.19 -12.25 7.84 0.80 0.01 -12.25 16 16 C -0.43 -26.35 9.49 67.93 0.64 -25.71 16 17 H 0.11 5.81 5.21 -2.91 -0.02 5.80 16 18 C -0.02 -1.38 5.49 84.85 0.47 -0.92 16 19 N -0.91 -59.97 13.67 21.62 0.30 -59.67 16 20 Si 1.02 44.73 29.55 68.60 2.03 46.75 16 21 H -0.25 -10.21 7.11 99.48 0.71 -9.51 16 22 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 23 H -0.25 -10.36 7.11 99.48 0.71 -9.65 16 24 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 25 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 26 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 27 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.12 1.17 8.14 -2.38 -0.02 1.15 16 29 H 0.41 9.54 6.63 -92.71 -0.61 8.93 16 30 H 0.16 3.30 6.40 -2.91 -0.02 3.29 16 31 H 0.16 2.88 8.06 -2.91 -0.02 2.85 16 32 H 0.15 3.56 8.06 -2.91 -0.02 3.53 16 33 H 0.12 5.41 5.64 -2.91 -0.02 5.40 16 34 H 0.27 16.42 8.31 -92.71 -0.77 15.65 16 Total: -1.00 -90.85 299.51 5.68 -85.17 By element: Atomic # 1 Polarization: 23.46 SS G_CDS: 0.52 Total: 23.99 kcal Atomic # 6 Polarization: -24.05 SS G_CDS: 4.00 Total: -20.05 kcal Atomic # 7 Polarization: -82.78 SS G_CDS: -1.91 Total: -84.69 kcal Atomic # 8 Polarization: -46.29 SS G_CDS: 0.26 Total: -46.04 kcal Atomic # 9 Polarization: -5.92 SS G_CDS: 0.78 Total: -5.15 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.75 kcal Total: -90.85 5.68 -85.17 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000288293663.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.494 kcal (2) G-P(sol) polarization free energy of solvation -90.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds