Wall clock time and date at job start Mon Mar 30 2020 00:37:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46496 * 109.47224 * 2 1 4 4 C 1.46505 * 119.99619 * 90.00069 * 3 2 1 5 5 C 1.50703 * 109.47064 * 90.00051 * 4 3 2 6 6 C 1.33384 * 125.20349 * 89.99917 * 5 4 3 7 7 C 1.38424 * 114.92035 * 179.97438 * 6 5 4 8 8 C 1.33386 * 114.92099 * 359.97438 * 7 6 5 9 9 S 1.75881 * 125.19973 * 269.69187 * 5 4 3 10 10 C 1.34774 * 120.00119 * 269.99893 * 3 2 1 11 11 O 1.21291 * 119.99579 * 180.02562 * 10 3 2 12 12 C 1.50697 * 120.00055 * 0.02562 * 10 3 2 13 13 C 1.53001 * 109.46754 * 179.97438 * 12 10 3 14 14 C 1.50701 * 109.46969 * 179.97438 * 13 12 10 15 15 H 1.08007 * 119.99830 * 359.97438 * 14 13 12 16 16 C 1.37873 * 120.00162 * 180.02562 * 14 13 12 17 17 N 1.31520 * 119.99961 * 179.97438 * 16 14 13 18 18 Si 1.86801 * 120.00059 * 359.97438 * 16 14 13 19 19 H 1.48502 * 109.46688 * 90.00258 * 18 16 14 20 20 H 1.48494 * 109.47344 * 210.00185 * 18 16 14 21 21 H 1.48497 * 109.47258 * 330.00662 * 18 16 14 22 22 H 1.08997 * 109.46824 * 59.99917 * 1 2 3 23 23 H 1.08994 * 109.46887 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.46832 * 299.99655 * 1 2 3 25 25 H 1.09006 * 109.46834 * 239.99836 * 2 1 3 26 26 H 1.09003 * 109.46788 * 120.00523 * 2 1 3 27 27 H 1.09002 * 109.47068 * 210.00020 * 4 3 2 28 28 H 1.09001 * 109.47372 * 330.00108 * 4 3 2 29 29 H 1.08005 * 122.54108 * 359.95242 * 6 5 4 30 30 H 1.08005 * 122.53921 * 180.02562 * 7 6 5 31 31 H 1.08002 * 125.20183 * 180.02562 * 8 7 6 32 32 H 1.08995 * 109.46788 * 299.99564 * 12 10 3 33 33 H 1.08992 * 109.47134 * 59.99783 * 12 10 3 34 34 H 1.08995 * 109.47222 * 299.99427 * 13 12 10 35 35 H 1.09006 * 109.47349 * 60.00168 * 13 12 10 36 36 H 0.97002 * 119.99747 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0717 1.2688 5 6 3.6859 1.8348 1.7038 6 6 4.7267 2.6039 1.3809 7 6 5.9417 2.1884 1.8981 8 6 5.8873 1.0822 2.6414 9 16 4.2273 0.5063 2.7213 10 6 2.2431 2.0165 -1.1672 11 8 2.6478 3.1599 -1.1670 12 6 1.9914 1.3063 -2.4723 13 6 2.3224 2.2440 -3.6351 14 6 2.0713 1.5336 -4.9403 15 1 1.7120 0.5151 -4.9403 16 6 2.3013 2.1836 -6.1342 17 7 2.0826 1.5634 -7.2733 18 14 2.9234 3.9450 -6.1342 19 1 4.4084 3.9453 -6.1338 20 1 2.4285 4.6448 -7.3468 21 1 2.4279 4.6449 -4.9218 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8934 -0.5139 -0.8900 26 1 1.8934 -0.5139 0.8900 27 1 2.0956 3.1410 1.1385 28 1 1.5818 1.6876 2.0285 29 1 4.6291 3.4840 0.7625 30 1 6.8636 2.7201 1.7143 31 1 6.7326 0.6140 3.1237 32 1 2.6213 0.4187 -2.5302 33 1 0.9434 1.0126 -2.5298 34 1 1.6922 3.1314 -3.5770 35 1 3.3704 2.5381 -3.5777 36 1 2.2440 2.0209 -8.1133 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000290934184.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:37:53 Heat of formation + Delta-G solvation = -11.409827 kcal Electronic energy + Delta-G solvation = -17992.757000 eV Core-core repulsion = 15182.478330 eV Total energy + Delta-G solvation = -2810.278670 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.74708 -37.74182 -35.81764 -33.57530 -32.03157 -30.98871 -29.54134 -26.95931 -25.34797 -23.41307 -23.01259 -20.92032 -19.22471 -18.69049 -17.40478 -16.95945 -16.24996 -15.93422 -15.62842 -14.86665 -14.09577 -13.90328 -13.58431 -13.24978 -13.20172 -12.91995 -12.58834 -12.55980 -12.40248 -12.22512 -11.92434 -11.53805 -11.31206 -11.16818 -10.90040 -10.84066 -10.12305 -10.00126 -9.77539 -9.32669 -9.16999 -8.75647 -8.58382 -8.52662 -8.49300 -6.02176 -4.00682 0.88820 1.55670 1.90538 2.66495 3.09334 3.33136 3.38353 3.44902 3.55741 4.51681 4.71728 4.82871 4.93915 5.00405 5.22160 5.29476 5.33512 5.40310 5.51473 5.58094 5.64737 5.73407 5.80778 6.06219 6.10786 6.12165 6.18622 6.27962 6.45474 6.62977 6.71146 7.37488 7.44547 7.60143 7.80290 8.49918 8.62015 9.00874 9.61094 11.10696 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.023119 B = 0.004906 C = 0.004382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.833899 B = 5706.214501 C = 6388.836914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.105 3.895 3 N -0.618 5.618 4 C 0.186 3.814 5 C -0.189 4.189 6 C -0.118 4.118 7 C -0.132 4.132 8 C -0.214 4.214 9 S 0.082 5.918 10 C 0.515 3.485 11 O -0.536 6.536 12 C -0.120 4.120 13 C 0.002 3.998 14 C -0.524 4.524 15 H 0.072 0.928 16 C 0.069 3.931 17 N -0.904 5.904 18 Si 0.877 3.123 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.261 1.261 22 H 0.064 0.936 23 H 0.066 0.934 24 H 0.054 0.946 25 H 0.087 0.913 26 H 0.072 0.928 27 H 0.100 0.900 28 H 0.082 0.918 29 H 0.145 0.855 30 H 0.139 0.861 31 H 0.161 0.839 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.023 0.977 35 H 0.018 0.982 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.988 -3.385 22.350 22.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.018 4.018 3 N -0.353 5.353 4 C 0.061 3.939 5 C -0.307 4.307 6 C -0.149 4.149 7 C -0.163 4.163 8 C -0.350 4.350 9 S 0.345 5.655 10 C 0.305 3.695 11 O -0.411 6.411 12 C -0.160 4.160 13 C -0.036 4.036 14 C -0.561 4.561 15 H 0.090 0.910 16 C -0.132 4.132 17 N -0.543 5.543 18 Si 0.704 3.296 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.185 1.185 22 H 0.083 0.917 23 H 0.085 0.915 24 H 0.073 0.927 25 H 0.105 0.895 26 H 0.090 0.910 27 H 0.119 0.881 28 H 0.100 0.900 29 H 0.163 0.837 30 H 0.156 0.844 31 H 0.179 0.821 32 H 0.103 0.897 33 H 0.104 0.896 34 H 0.041 0.959 35 H 0.036 0.964 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.495 -3.964 22.843 23.232 hybrid contribution 1.195 1.878 -0.766 2.354 sum 2.690 -2.086 22.077 22.338 Atomic orbital electron populations 1.22222 0.95777 1.02326 1.02704 1.21567 0.94470 0.82415 1.03370 1.48238 1.67218 1.14586 1.05261 1.19740 0.88766 0.99665 0.85729 1.24988 1.00803 0.99713 1.05217 1.20326 0.91335 1.01976 1.01268 1.20245 0.99203 0.97343 0.99486 1.25569 0.99720 1.01944 1.07743 1.84064 1.01726 1.29580 1.50138 1.21566 0.75533 0.86763 0.85608 1.90628 1.44850 1.18299 1.87359 1.21711 1.02866 1.00479 0.90940 1.19376 0.97114 0.94914 0.92211 1.21106 1.45027 1.01161 0.88854 0.90962 1.24962 0.94809 0.97956 0.95450 1.69915 1.49458 1.37491 0.97414 0.86807 0.79515 0.85524 0.77786 1.20274 1.21445 1.18540 0.91654 0.91463 0.92689 0.89513 0.90986 0.88142 0.89962 0.83734 0.84351 0.82105 0.89741 0.89581 0.95862 0.96363 0.92740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.69 10.24 37.16 0.38 -1.31 16 2 C 0.10 1.16 5.93 -4.04 -0.02 1.14 16 3 N -0.62 -8.67 2.46 -175.05 -0.43 -9.10 16 4 C 0.19 2.30 5.90 -5.19 -0.03 2.27 16 5 C -0.19 -2.38 6.09 -36.00 -0.22 -2.60 16 6 C -0.12 -1.59 10.05 -41.21 -0.41 -2.00 16 7 C -0.13 -1.53 10.18 -41.21 -0.42 -1.95 16 8 C -0.21 -2.22 11.23 29.04 0.33 -1.89 16 9 S 0.08 0.86 23.33 -107.50 -2.51 -1.64 16 10 C 0.51 9.48 7.67 -10.99 -0.08 9.40 16 11 O -0.54 -11.63 15.56 5.55 0.09 -11.54 16 12 C -0.12 -2.37 4.19 -27.88 -0.12 -2.49 16 13 C 0.00 0.04 3.33 -27.88 -0.09 -0.05 16 14 C -0.52 -15.03 9.66 -34.44 -0.33 -15.36 16 15 H 0.07 2.16 7.99 -52.48 -0.42 1.74 16 16 C 0.07 2.06 5.47 -17.82 -0.10 1.97 16 17 N -0.90 -28.09 13.96 55.43 0.77 -27.32 16 18 Si 0.88 22.71 27.47 -169.99 -4.67 18.04 16 19 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 20 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 21 H -0.26 -6.73 6.54 56.52 0.37 -6.36 16 22 H 0.06 0.75 7.22 -51.93 -0.37 0.38 16 23 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.09 0.99 6.44 -51.93 -0.33 0.66 16 26 H 0.07 0.68 8.07 -51.93 -0.42 0.26 16 27 H 0.10 1.36 7.42 -51.93 -0.39 0.97 16 28 H 0.08 0.80 8.07 -51.93 -0.42 0.38 16 29 H 0.15 2.12 8.06 -52.48 -0.42 1.70 16 30 H 0.14 1.35 8.06 -52.48 -0.42 0.93 16 31 H 0.16 1.26 8.06 -52.49 -0.42 0.84 16 32 H 0.08 1.57 7.40 -51.93 -0.38 1.19 16 33 H 0.09 1.57 7.18 -51.93 -0.37 1.20 16 34 H 0.02 0.61 7.16 -51.93 -0.37 0.24 16 35 H 0.02 0.47 7.53 -51.93 -0.39 0.08 16 36 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 316.72 15.07 4.77 4.77 Total: -1.00 -33.28 316.72 -8.25 -41.53 By element: Atomic # 1 Polarization: 3.29 SS G_CDS: -5.15 Total: -1.86 kcal Atomic # 6 Polarization: -11.76 SS G_CDS: -1.13 Total: -12.88 kcal Atomic # 7 Polarization: -36.76 SS G_CDS: 0.34 Total: -36.42 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: 0.09 Total: -11.54 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -4.67 Total: 18.04 kcal Atomic # 16 Polarization: 0.86 SS G_CDS: -2.51 Total: -1.64 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -33.28 -8.25 -41.53 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290934184.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.124 kcal (2) G-P(sol) polarization free energy of solvation -33.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds