Wall clock time and date at job start Mon Mar 30 2020 00:37:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46496 * 109.47224 * 2 1 4 4 C 1.46505 * 119.99619 * 90.00069 * 3 2 1 5 5 C 1.50703 * 109.47064 * 90.00051 * 4 3 2 6 6 C 1.33384 * 125.20349 * 89.99917 * 5 4 3 7 7 C 1.38424 * 114.92035 * 179.97438 * 6 5 4 8 8 C 1.33386 * 114.92099 * 359.97438 * 7 6 5 9 9 S 1.75881 * 125.19973 * 269.69187 * 5 4 3 10 10 C 1.34774 * 120.00119 * 269.99893 * 3 2 1 11 11 O 1.21291 * 119.99579 * 180.02562 * 10 3 2 12 12 C 1.50697 * 120.00055 * 0.02562 * 10 3 2 13 13 C 1.53001 * 109.46754 * 179.97438 * 12 10 3 14 14 C 1.50701 * 109.46969 * 179.97438 * 13 12 10 15 15 H 1.08007 * 119.99830 * 359.97438 * 14 13 12 16 16 C 1.37873 * 120.00162 * 180.02562 * 14 13 12 17 17 N 1.31520 * 119.99961 * 179.97438 * 16 14 13 18 18 Si 1.86801 * 120.00059 * 359.97438 * 16 14 13 19 19 H 1.48502 * 109.46688 * 90.00258 * 18 16 14 20 20 H 1.48494 * 109.47344 * 210.00185 * 18 16 14 21 21 H 1.48497 * 109.47258 * 330.00662 * 18 16 14 22 22 H 1.08997 * 109.46824 * 59.99917 * 1 2 3 23 23 H 1.08994 * 109.46887 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.46832 * 299.99655 * 1 2 3 25 25 H 1.09006 * 109.46834 * 239.99836 * 2 1 3 26 26 H 1.09003 * 109.46788 * 120.00523 * 2 1 3 27 27 H 1.09002 * 109.47068 * 210.00020 * 4 3 2 28 28 H 1.09001 * 109.47372 * 330.00108 * 4 3 2 29 29 H 1.08005 * 122.54108 * 359.95242 * 6 5 4 30 30 H 1.08005 * 122.53921 * 180.02562 * 7 6 5 31 31 H 1.08002 * 125.20183 * 180.02562 * 8 7 6 32 32 H 1.08995 * 109.46788 * 299.99564 * 12 10 3 33 33 H 1.08992 * 109.47134 * 59.99783 * 12 10 3 34 34 H 1.08995 * 109.47222 * 299.99427 * 13 12 10 35 35 H 1.09006 * 109.47349 * 60.00168 * 13 12 10 36 36 H 0.97002 * 119.99747 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0717 1.2688 5 6 3.6859 1.8348 1.7038 6 6 4.7267 2.6039 1.3809 7 6 5.9417 2.1884 1.8981 8 6 5.8873 1.0822 2.6414 9 16 4.2273 0.5063 2.7213 10 6 2.2431 2.0165 -1.1672 11 8 2.6478 3.1599 -1.1670 12 6 1.9914 1.3063 -2.4723 13 6 2.3224 2.2440 -3.6351 14 6 2.0713 1.5336 -4.9403 15 1 1.7120 0.5151 -4.9403 16 6 2.3013 2.1836 -6.1342 17 7 2.0826 1.5634 -7.2733 18 14 2.9234 3.9450 -6.1342 19 1 4.4084 3.9453 -6.1338 20 1 2.4285 4.6448 -7.3468 21 1 2.4279 4.6449 -4.9218 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8934 -0.5139 -0.8900 26 1 1.8934 -0.5139 0.8900 27 1 2.0956 3.1410 1.1385 28 1 1.5818 1.6876 2.0285 29 1 4.6291 3.4840 0.7625 30 1 6.8636 2.7201 1.7143 31 1 6.7326 0.6140 3.1237 32 1 2.6213 0.4187 -2.5302 33 1 0.9434 1.0126 -2.5298 34 1 1.6922 3.1314 -3.5770 35 1 3.3704 2.5381 -3.5777 36 1 2.2440 2.0209 -8.1133 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000290934184.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:37:53 Heat of formation + Delta-G solvation = -31.141420 kcal Electronic energy + Delta-G solvation = -17993.612626 eV Core-core repulsion = 15182.478330 eV Total energy + Delta-G solvation = -2811.134296 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.06678 -38.71602 -37.02842 -35.60566 -33.56961 -32.44782 -30.57852 -28.49159 -26.73234 -24.37252 -24.14922 -22.69080 -20.24828 -19.96182 -19.13338 -18.21091 -17.56881 -17.25825 -16.64641 -16.24370 -16.15073 -15.10894 -14.81405 -14.71545 -14.49120 -14.10124 -13.85133 -13.74744 -13.50009 -13.39910 -13.29384 -12.93856 -12.70434 -12.40348 -12.16553 -12.02025 -11.89792 -11.73346 -11.68363 -11.39687 -10.79380 -10.78049 -9.84743 -9.61093 -9.35784 -8.32279 -6.34925 -0.01389 0.69632 1.03243 1.31645 1.33586 1.48687 1.64463 1.72566 2.20566 2.33961 3.03410 3.67667 3.81341 4.06883 4.15731 4.23313 4.32108 4.36998 4.46167 4.56902 4.64400 4.67136 4.70411 4.84859 4.93930 5.06838 5.20319 5.29929 5.36920 5.40714 5.42715 5.53390 5.58950 5.59596 6.22445 6.35582 6.70862 7.21459 7.30416 8.83425 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.023119 B = 0.004906 C = 0.004382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.833899 B = 5706.214501 C = 6388.836914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.098 3.902 3 N -0.606 5.606 4 C 0.185 3.815 5 C -0.208 4.208 6 C -0.138 4.138 7 C -0.151 4.151 8 C -0.209 4.209 9 S 0.127 5.873 10 C 0.515 3.485 11 O -0.577 6.577 12 C -0.113 4.113 13 C 0.007 3.993 14 C -0.527 4.527 15 H 0.050 0.950 16 C 0.016 3.984 17 N -0.942 5.942 18 Si 0.936 3.064 19 H -0.270 1.270 20 H -0.277 1.277 21 H -0.262 1.262 22 H 0.044 0.956 23 H 0.088 0.912 24 H 0.065 0.935 25 H 0.083 0.917 26 H 0.098 0.902 27 H 0.083 0.917 28 H 0.117 0.883 29 H 0.120 0.880 30 H 0.150 0.850 31 H 0.190 0.810 32 H 0.096 0.904 33 H 0.100 0.900 34 H 0.010 0.990 35 H 0.005 0.995 36 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.217 -4.351 24.664 25.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.024 4.024 3 N -0.339 5.339 4 C 0.061 3.939 5 C -0.326 4.326 6 C -0.170 4.170 7 C -0.182 4.182 8 C -0.344 4.344 9 S 0.390 5.610 10 C 0.306 3.694 11 O -0.457 6.457 12 C -0.153 4.153 13 C -0.031 4.031 14 C -0.565 4.565 15 H 0.069 0.931 16 C -0.182 4.182 17 N -0.583 5.583 18 Si 0.761 3.239 19 H -0.195 1.195 20 H -0.202 1.202 21 H -0.187 1.187 22 H 0.063 0.937 23 H 0.107 0.893 24 H 0.084 0.916 25 H 0.101 0.899 26 H 0.116 0.884 27 H 0.101 0.899 28 H 0.135 0.865 29 H 0.138 0.862 30 H 0.168 0.832 31 H 0.207 0.793 32 H 0.114 0.886 33 H 0.118 0.882 34 H 0.028 0.972 35 H 0.024 0.976 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.709 -4.972 25.195 25.738 hybrid contribution 1.109 2.053 -1.408 2.726 sum 2.818 -2.918 23.787 24.130 Atomic orbital electron populations 1.22185 0.94535 1.03624 1.02224 1.21851 0.95464 0.80589 1.04506 1.48178 1.65575 1.15527 1.04574 1.19882 0.89782 0.98875 0.85400 1.25040 1.00498 1.00972 1.06118 1.20361 0.92850 1.01873 1.01905 1.20356 0.99038 0.98382 1.00380 1.25983 1.00773 1.01139 1.06528 1.83844 1.01237 1.27484 1.48445 1.21203 0.75608 0.86189 0.86450 1.90615 1.47097 1.19954 1.88015 1.21519 1.03963 0.99632 0.90195 1.19210 0.95935 0.95182 0.92755 1.21401 1.44128 1.00483 0.90535 0.93146 1.25763 0.95224 1.01949 0.95233 1.70021 1.50861 1.39293 0.98129 0.85865 0.79258 0.80837 0.77976 1.19489 1.20187 1.18675 0.93715 0.89293 0.91585 0.89904 0.88368 0.89922 0.86545 0.86240 0.83219 0.79282 0.88596 0.88195 0.97209 0.97622 0.92358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.85 10.24 71.98 0.74 -2.11 16 2 C 0.10 1.90 5.93 86.38 0.51 2.41 16 3 N -0.61 -16.14 2.46 -826.11 -2.03 -18.17 16 4 C 0.18 4.30 5.90 85.63 0.50 4.81 16 5 C -0.21 -4.95 6.09 24.59 0.15 -4.80 16 6 C -0.14 -3.72 10.05 21.22 0.21 -3.50 16 7 C -0.15 -3.33 10.18 21.22 0.22 -3.12 16 8 C -0.21 -3.75 11.23 66.72 0.75 -3.00 16 9 S 0.13 2.27 23.33 -56.49 -1.32 0.95 16 10 C 0.52 18.93 7.67 87.66 0.67 19.60 16 11 O -0.58 -25.62 15.56 -3.06 -0.05 -25.67 16 12 C -0.11 -4.46 4.19 29.85 0.13 -4.33 16 13 C 0.01 0.36 3.33 29.85 0.10 0.46 16 14 C -0.53 -30.78 9.66 25.60 0.25 -30.53 16 15 H 0.05 3.09 7.99 -2.91 -0.02 3.06 16 16 C 0.02 0.97 5.47 84.65 0.46 1.43 16 17 N -0.94 -59.31 13.96 21.45 0.30 -59.01 16 18 Si 0.94 47.31 27.47 68.60 1.88 49.19 16 19 H -0.27 -13.23 7.11 99.48 0.71 -12.52 16 20 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 21 H -0.26 -13.23 6.54 99.48 0.65 -12.58 16 22 H 0.04 0.95 7.22 -2.39 -0.02 0.94 16 23 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 24 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 25 H 0.08 1.71 6.44 -2.38 -0.02 1.70 16 26 H 0.10 1.45 8.07 -2.39 -0.02 1.43 16 27 H 0.08 2.24 7.42 -2.39 -0.02 2.22 16 28 H 0.12 1.89 8.07 -2.39 -0.02 1.87 16 29 H 0.12 3.74 8.06 -2.91 -0.02 3.72 16 30 H 0.15 2.80 8.06 -2.91 -0.02 2.77 16 31 H 0.19 2.23 8.06 -2.91 -0.02 2.21 16 32 H 0.10 3.52 7.40 -2.39 -0.02 3.50 16 33 H 0.10 3.61 7.18 -2.39 -0.02 3.59 16 34 H 0.01 0.51 7.16 -2.39 -0.02 0.49 16 35 H 0.01 0.29 7.53 -2.38 -0.02 0.27 16 36 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 Total: -1.00 -72.79 316.72 4.48 -68.31 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: 1.00 Total: 7.08 kcal Atomic # 6 Polarization: -27.37 SS G_CDS: 4.69 Total: -22.68 kcal Atomic # 7 Polarization: -75.45 SS G_CDS: -1.73 Total: -77.18 kcal Atomic # 8 Polarization: -25.62 SS G_CDS: -0.05 Total: -25.67 kcal Atomic # 14 Polarization: 47.31 SS G_CDS: 1.88 Total: 49.19 kcal Atomic # 16 Polarization: 2.27 SS G_CDS: -1.32 Total: 0.95 kcal Total: -72.79 4.48 -68.31 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290934184.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.170 kcal (2) G-P(sol) polarization free energy of solvation -72.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds