Wall clock time and date at job start Mon Mar 30 2020 00:59:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.36022 * 116.99690 * 2 1 4 4 C 1.38524 * 120.05854 * 359.72559 * 3 2 1 5 5 C 1.38249 * 120.04015 * 180.27181 * 4 3 2 6 6 C 1.38468 * 120.15256 * 0.02562 * 5 4 3 7 7 F 1.35110 * 119.94479 * 180.02562 * 6 5 4 8 8 C 1.38379 * 120.11593 * 359.97438 * 6 5 4 9 9 C 1.38721 * 119.96020 * 0.02562 * 8 6 5 10 10 N 1.40118 * 120.07928 * 179.97438 * 9 8 6 11 11 C 1.34773 * 119.99658 * 24.80924 * 10 9 8 12 12 O 1.21290 * 120.00388 * 5.53072 * 11 10 9 13 13 C 1.50705 * 119.99718 * 185.53402 * 11 10 9 14 14 C 1.53004 * 109.47104 * 179.97438 * 13 11 10 15 15 C 1.50696 * 109.47298 * 180.02562 * 14 13 11 16 16 H 1.08005 * 119.99779 * 359.97438 * 15 14 13 17 17 C 1.37873 * 120.00280 * 180.02562 * 15 14 13 18 18 N 1.31521 * 119.99867 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00108 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47400 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47046 * 120.00264 * 19 17 15 22 22 H 1.48503 * 109.47009 * 239.99757 * 19 17 15 23 23 H 1.09003 * 109.46684 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47408 * 299.99886 * 1 2 3 25 25 H 1.08999 * 109.47237 * 59.99767 * 1 2 3 26 26 H 1.08006 * 119.98086 * 0.25312 * 4 3 2 27 27 H 1.08005 * 119.92571 * 179.97438 * 5 4 3 28 28 H 1.08001 * 120.01975 * 180.02562 * 8 6 5 29 29 H 0.96992 * 120.00105 * 204.81256 * 10 9 8 30 30 H 1.08995 * 109.46999 * 300.00015 * 13 11 10 31 31 H 1.08993 * 109.47156 * 60.00238 * 13 11 10 32 32 H 1.09001 * 109.47281 * 300.00396 * 14 13 11 33 33 H 1.08998 * 109.46865 * 59.99655 * 14 13 11 34 34 H 0.96997 * 119.99846 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2120 0.0000 4 6 1.2931 2.3745 -0.0057 5 6 1.9211 3.6061 -0.0114 6 6 3.3037 3.6819 -0.0119 7 9 3.9130 4.8877 -0.0169 8 6 4.0624 2.5247 -0.0062 9 6 3.4373 1.2863 -0.0005 10 7 4.2031 0.1130 0.0048 11 6 5.4587 0.1301 0.4943 12 8 5.8906 1.1335 1.0213 13 6 6.3261 -1.0976 0.3868 14 6 7.6923 -0.8133 1.0143 15 6 8.5599 -2.0407 0.9063 16 1 8.1752 -2.9344 0.4374 17 6 9.8444 -2.0233 1.4070 18 7 10.3123 -0.9356 1.9793 19 14 10.9195 -3.5450 1.2737 20 1 10.1634 -4.6275 0.5942 21 1 12.1379 -3.2230 0.4880 22 1 11.3120 -3.9944 2.6336 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 0.2145 2.3186 -0.0061 27 1 1.3319 4.5113 -0.0163 28 1 5.1407 2.5856 -0.0062 29 1 3.8297 -0.7114 -0.3439 30 1 5.8501 -1.9258 0.9116 31 1 6.4564 -1.3596 -0.6631 32 1 8.1681 0.0149 0.4891 33 1 7.5623 -0.5510 2.0642 34 1 11.2161 -0.9232 2.3312 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291855625.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:00 Heat of formation + Delta-G solvation = -98.036978 kcal Electronic energy + Delta-G solvation = -19495.574576 eV Core-core repulsion = 16115.326294 eV Total energy + Delta-G solvation = -3380.248282 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -48.76909 -40.75005 -39.21053 -37.15661 -34.57171 -33.53346 -31.30748 -30.10650 -29.53127 -27.39753 -25.82175 -23.39355 -22.35882 -21.43491 -19.79288 -18.54880 -17.76551 -17.27667 -16.53434 -16.09696 -15.80836 -15.51205 -15.38195 -15.03664 -14.81147 -14.45758 -14.13542 -13.43149 -13.15430 -13.03292 -12.77722 -12.34685 -12.22074 -12.03782 -11.43943 -11.18360 -11.13864 -10.96398 -10.60493 -10.41706 -10.01988 -9.71389 -9.25885 -9.09001 -8.63373 -8.34952 -7.80711 -5.98427 -4.03122 1.05484 1.11752 2.93944 2.96251 3.22937 3.31878 3.39352 3.42491 3.59386 4.29005 4.45862 4.55652 4.68970 4.87419 4.88818 5.08736 5.20274 5.20872 5.36904 5.50796 5.65098 5.85403 5.96197 6.12170 6.12844 6.18207 6.47229 6.70971 6.80279 7.16883 7.62421 7.71360 7.80376 8.02941 8.32820 8.52327 9.04888 9.60849 11.12535 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.027006 B = 0.003973 C = 0.003504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.550455 B = 7045.232526 C = 7989.292075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.316 6.316 3 C 0.078 3.922 4 C -0.160 4.160 5 C -0.144 4.144 6 C 0.088 3.912 7 F -0.138 7.138 8 C -0.138 4.138 9 C 0.167 3.833 10 N -0.673 5.673 11 C 0.509 3.491 12 O -0.511 6.511 13 C -0.128 4.128 14 C 0.035 3.965 15 C -0.528 4.528 16 H 0.057 0.943 17 C 0.058 3.942 18 N -0.889 5.889 19 Si 0.893 3.107 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.284 1.284 23 H 0.100 0.900 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.139 0.861 27 H 0.136 0.864 28 H 0.168 0.832 29 H 0.416 0.584 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.025 0.975 33 H 0.025 0.975 34 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.003 4.071 -6.049 23.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.230 6.230 3 C 0.031 3.969 4 C -0.180 4.180 5 C -0.164 4.164 6 C 0.068 3.932 7 F -0.117 7.117 8 C -0.159 4.159 9 C 0.070 3.930 10 N -0.318 5.318 11 C 0.299 3.701 12 O -0.385 6.385 13 C -0.168 4.168 14 C -0.002 4.002 15 C -0.566 4.566 16 H 0.075 0.925 17 C -0.144 4.144 18 N -0.527 5.527 19 Si 0.721 3.279 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.210 1.210 23 H 0.119 0.881 24 H 0.074 0.926 25 H 0.073 0.927 26 H 0.156 0.844 27 H 0.154 0.846 28 H 0.185 0.815 29 H 0.252 0.748 30 H 0.103 0.897 31 H 0.104 0.896 32 H 0.043 0.957 33 H 0.044 0.956 34 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -21.332 4.645 -5.576 22.533 hybrid contribution 0.209 -0.811 -0.167 0.853 sum -21.123 3.835 -5.743 22.223 Atomic orbital electron populations 1.23052 0.78168 1.04049 1.01295 1.86034 1.21486 1.26090 1.89353 1.18671 0.90338 0.85164 1.02764 1.20793 0.99949 0.90828 1.06390 1.20812 0.92583 0.98556 1.04491 1.17372 0.90475 0.80496 1.04832 1.91499 1.83642 1.42424 1.94104 1.21332 1.03067 0.89008 1.02540 1.16889 0.86787 0.87529 1.01775 1.43850 1.14992 1.10517 1.62454 1.21928 0.80460 0.91909 0.75770 1.90644 1.72262 1.34633 1.40929 1.21924 0.98388 0.93047 1.03420 1.18939 0.87395 0.97209 0.96669 1.21228 0.98169 0.98463 1.38744 0.92459 1.25023 0.98028 0.96096 0.95205 1.70007 1.16742 1.27231 1.38761 0.86524 0.80510 0.83118 0.77741 1.19727 1.20994 1.21008 0.88128 0.92611 0.92657 0.84366 0.84644 0.81483 0.74806 0.89704 0.89595 0.95651 0.95647 0.92954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.18 16 2 O -0.32 -3.36 9.91 -19.81 -0.20 -3.56 16 3 C 0.08 0.95 6.70 -39.09 -0.26 0.69 16 4 C -0.16 -1.63 9.03 -39.47 -0.36 -1.99 16 5 C -0.14 -1.61 10.02 -39.49 -0.40 -2.01 16 6 C 0.09 1.26 7.29 -39.44 -0.29 0.97 16 7 F -0.14 -2.07 17.26 2.25 0.04 -2.03 16 8 C -0.14 -2.22 8.70 -39.35 -0.34 -2.57 16 9 C 0.17 2.49 6.45 -83.50 -0.54 1.95 16 10 N -0.67 -10.10 5.29 -9.75 -0.05 -10.15 16 11 C 0.51 9.64 7.64 -10.98 -0.08 9.56 16 12 O -0.51 -11.60 13.15 5.55 0.07 -11.53 16 13 C -0.13 -2.51 5.64 -27.88 -0.16 -2.67 16 14 C 0.04 0.93 4.26 -27.88 -0.12 0.81 16 15 C -0.53 -14.76 9.11 -34.44 -0.31 -15.08 16 16 H 0.06 1.51 7.74 -52.48 -0.41 1.10 16 17 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 18 N -0.89 -27.21 13.29 55.43 0.74 -26.48 16 19 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 20 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 23 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.06 0.31 7.67 -51.93 -0.40 -0.09 16 25 H 0.05 0.27 7.65 -51.93 -0.40 -0.12 16 26 H 0.14 0.95 6.29 -52.48 -0.33 0.62 16 27 H 0.14 1.16 8.06 -52.48 -0.42 0.73 16 28 H 0.17 3.10 5.79 -52.49 -0.30 2.79 16 29 H 0.42 5.02 8.34 -40.82 -0.34 4.68 16 30 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 31 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 32 H 0.03 0.73 8.10 -51.93 -0.42 0.30 16 33 H 0.03 0.73 8.10 -51.93 -0.42 0.31 16 34 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 300.35 15.07 4.53 4.53 Total: -1.00 -33.60 300.35 -5.70 -39.30 By element: Atomic # 1 Polarization: 4.84 SS G_CDS: -3.84 Total: 0.99 kcal Atomic # 6 Polarization: -5.60 SS G_CDS: -1.96 Total: -7.57 kcal Atomic # 7 Polarization: -37.31 SS G_CDS: 0.68 Total: -36.62 kcal Atomic # 8 Polarization: -14.96 SS G_CDS: -0.12 Total: -15.08 kcal Atomic # 9 Polarization: -2.07 SS G_CDS: 0.04 Total: -2.03 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -33.60 -5.70 -39.30 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291855625.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.739 kcal (2) G-P(sol) polarization free energy of solvation -33.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds