Wall clock time and date at job start Mon Mar 30 2020 00:59:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.36022 * 116.99690 * 2 1 4 4 C 1.38524 * 120.05854 * 359.72559 * 3 2 1 5 5 C 1.38249 * 120.04015 * 180.27181 * 4 3 2 6 6 C 1.38468 * 120.15256 * 0.02562 * 5 4 3 7 7 F 1.35110 * 119.94479 * 180.02562 * 6 5 4 8 8 C 1.38379 * 120.11593 * 359.97438 * 6 5 4 9 9 C 1.38721 * 119.96020 * 0.02562 * 8 6 5 10 10 N 1.40118 * 120.07928 * 179.97438 * 9 8 6 11 11 C 1.34773 * 119.99658 * 24.80924 * 10 9 8 12 12 O 1.21290 * 120.00388 * 5.53072 * 11 10 9 13 13 C 1.50705 * 119.99718 * 185.53402 * 11 10 9 14 14 C 1.53004 * 109.47104 * 179.97438 * 13 11 10 15 15 C 1.50696 * 109.47298 * 180.02562 * 14 13 11 16 16 H 1.08005 * 119.99779 * 359.97438 * 15 14 13 17 17 C 1.37873 * 120.00280 * 180.02562 * 15 14 13 18 18 N 1.31521 * 119.99867 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00108 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47400 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47046 * 120.00264 * 19 17 15 22 22 H 1.48503 * 109.47009 * 239.99757 * 19 17 15 23 23 H 1.09003 * 109.46684 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47408 * 299.99886 * 1 2 3 25 25 H 1.08999 * 109.47237 * 59.99767 * 1 2 3 26 26 H 1.08006 * 119.98086 * 0.25312 * 4 3 2 27 27 H 1.08005 * 119.92571 * 179.97438 * 5 4 3 28 28 H 1.08001 * 120.01975 * 180.02562 * 8 6 5 29 29 H 0.96992 * 120.00105 * 204.81256 * 10 9 8 30 30 H 1.08995 * 109.46999 * 300.00015 * 13 11 10 31 31 H 1.08993 * 109.47156 * 60.00238 * 13 11 10 32 32 H 1.09001 * 109.47281 * 300.00396 * 14 13 11 33 33 H 1.08998 * 109.46865 * 59.99655 * 14 13 11 34 34 H 0.96997 * 119.99846 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2120 0.0000 4 6 1.2931 2.3745 -0.0057 5 6 1.9211 3.6061 -0.0114 6 6 3.3037 3.6819 -0.0119 7 9 3.9130 4.8877 -0.0169 8 6 4.0624 2.5247 -0.0062 9 6 3.4373 1.2863 -0.0005 10 7 4.2031 0.1130 0.0048 11 6 5.4587 0.1301 0.4943 12 8 5.8906 1.1335 1.0213 13 6 6.3261 -1.0976 0.3868 14 6 7.6923 -0.8133 1.0143 15 6 8.5599 -2.0407 0.9063 16 1 8.1752 -2.9344 0.4374 17 6 9.8444 -2.0233 1.4070 18 7 10.3123 -0.9356 1.9793 19 14 10.9195 -3.5450 1.2737 20 1 10.1634 -4.6275 0.5942 21 1 12.1379 -3.2230 0.4880 22 1 11.3120 -3.9944 2.6336 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 0.2145 2.3186 -0.0061 27 1 1.3319 4.5113 -0.0163 28 1 5.1407 2.5856 -0.0062 29 1 3.8297 -0.7114 -0.3439 30 1 5.8501 -1.9258 0.9116 31 1 6.4564 -1.3596 -0.6631 32 1 8.1681 0.0149 0.4891 33 1 7.5623 -0.5510 2.0642 34 1 11.2161 -0.9232 2.3312 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291855625.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:00 Heat of formation + Delta-G solvation = -121.314391 kcal Electronic energy + Delta-G solvation = -19496.583960 eV Core-core repulsion = 16115.326294 eV Total energy + Delta-G solvation = -3381.257666 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.88193 -41.88001 -40.41194 -38.13437 -35.89007 -35.57369 -33.16381 -31.26924 -30.55163 -28.11100 -27.66130 -24.79461 -23.44678 -22.98791 -21.28083 -19.59128 -18.87848 -18.72464 -18.03028 -17.26131 -17.02002 -16.70674 -16.48277 -16.42706 -16.37644 -15.67091 -15.33267 -14.91402 -14.49179 -14.20631 -14.00372 -13.80847 -13.49229 -13.28481 -12.91657 -12.83583 -12.45368 -12.20274 -11.95869 -11.92551 -11.65576 -11.59123 -11.28494 -10.75034 -10.57716 -9.71995 -8.84522 -8.18389 -6.32362 0.01598 0.10827 1.42947 1.44199 1.54524 1.57538 1.93192 2.23921 2.43574 2.54348 3.15233 3.25506 3.65099 3.84739 3.92434 4.14195 4.28243 4.43489 4.49288 4.50185 4.51279 4.64978 4.82676 4.88636 5.03524 5.06134 5.12109 5.31991 5.49930 5.60725 5.66525 5.84260 6.16187 6.31894 6.38386 6.85758 7.11910 7.38103 8.94548 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.027006 B = 0.003973 C = 0.003504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.550455 B = 7045.232526 C = 7989.292075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.328 6.328 3 C 0.093 3.907 4 C -0.147 4.147 5 C -0.123 4.123 6 C 0.062 3.938 7 F -0.150 7.150 8 C -0.162 4.162 9 C 0.134 3.866 10 N -0.653 5.653 11 C 0.511 3.489 12 O -0.561 6.561 13 C -0.115 4.115 14 C 0.040 3.960 15 C -0.542 4.542 16 H 0.078 0.922 17 C -0.007 4.007 18 N -0.938 5.938 19 Si 0.974 3.026 20 H -0.252 1.252 21 H -0.281 1.281 22 H -0.281 1.281 23 H 0.119 0.881 24 H 0.068 0.932 25 H 0.075 0.925 26 H 0.184 0.816 27 H 0.170 0.830 28 H 0.129 0.871 29 H 0.431 0.569 30 H 0.111 0.889 31 H 0.111 0.889 32 H -0.016 1.016 33 H -0.016 1.016 34 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.334 2.271 -7.072 26.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.242 6.242 3 C 0.045 3.955 4 C -0.166 4.166 5 C -0.142 4.142 6 C 0.042 3.958 7 F -0.129 7.129 8 C -0.183 4.183 9 C 0.038 3.962 10 N -0.299 5.299 11 C 0.301 3.699 12 O -0.439 6.439 13 C -0.155 4.155 14 C 0.003 3.997 15 C -0.579 4.579 16 H 0.096 0.904 17 C -0.204 4.204 18 N -0.578 5.578 19 Si 0.798 3.202 20 H -0.175 1.175 21 H -0.207 1.207 22 H -0.207 1.207 23 H 0.137 0.863 24 H 0.087 0.913 25 H 0.093 0.907 26 H 0.201 0.799 27 H 0.188 0.812 28 H 0.147 0.853 29 H 0.270 0.730 30 H 0.129 0.871 31 H 0.129 0.871 32 H 0.003 0.997 33 H 0.003 0.997 34 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -24.737 2.816 -6.634 25.765 hybrid contribution 1.063 -0.211 0.139 1.093 sum -23.674 2.604 -6.496 24.686 Atomic orbital electron populations 1.23457 0.75503 1.05992 1.02845 1.86038 1.24143 1.25166 1.88808 1.18691 0.89233 0.86713 1.00881 1.21288 1.01943 0.89327 1.04023 1.21213 0.90988 1.00524 1.01511 1.17619 0.91888 0.79500 1.06749 1.91461 1.84147 1.42858 1.94403 1.21128 1.01663 0.90900 1.04637 1.17001 0.88224 0.86584 1.04344 1.43416 1.13597 1.11530 1.61342 1.21692 0.81668 0.90860 0.75645 1.90647 1.73615 1.36118 1.43494 1.21674 0.95089 0.94174 1.04553 1.18721 0.91110 0.95673 0.94242 1.21730 0.98606 0.99299 1.38310 0.90392 1.26133 0.99958 0.99688 0.94647 1.70188 1.17333 1.30136 1.40161 0.85265 0.78180 0.78878 0.77865 1.17491 1.20714 1.20698 0.86276 0.91303 0.90680 0.79858 0.81213 0.85290 0.72999 0.87075 0.87051 0.99719 0.99728 0.92881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.81 113.37 1.11 1.24 16 2 O -0.33 -5.85 9.91 -93.80 -0.93 -6.78 16 3 C 0.09 2.03 6.70 22.59 0.15 2.18 16 4 C -0.15 -2.39 9.03 22.34 0.20 -2.19 16 5 C -0.12 -2.39 10.02 22.33 0.22 -2.16 16 6 C 0.06 1.79 7.29 22.36 0.16 1.95 16 7 F -0.15 -4.66 17.26 44.97 0.78 -3.89 16 8 C -0.16 -5.52 8.70 22.42 0.19 -5.32 16 9 C 0.13 4.01 6.45 38.18 0.25 4.26 16 10 N -0.65 -19.65 5.29 -303.15 -1.60 -21.25 16 11 C 0.51 20.21 7.64 87.66 0.67 20.88 16 12 O -0.56 -27.67 13.15 -3.06 -0.04 -27.71 16 13 C -0.12 -4.59 5.64 29.85 0.17 -4.42 16 14 C 0.04 2.23 4.26 29.85 0.13 2.36 16 15 C -0.54 -30.69 9.11 25.60 0.23 -30.46 16 16 H 0.08 4.00 7.74 -2.91 -0.02 3.98 16 17 C -0.01 -0.40 5.46 84.65 0.46 0.06 16 18 N -0.94 -59.76 13.29 21.45 0.28 -59.47 16 19 Si 0.97 44.32 29.54 68.60 2.03 46.35 16 20 H -0.25 -10.50 7.11 99.48 0.71 -9.79 16 21 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 22 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 23 H 0.12 0.53 8.14 -2.39 -0.02 0.51 16 24 H 0.07 0.40 7.67 -2.39 -0.02 0.38 16 25 H 0.07 0.33 7.65 -2.39 -0.02 0.31 16 26 H 0.18 1.34 6.29 -2.91 -0.02 1.33 16 27 H 0.17 2.14 8.06 -2.91 -0.02 2.11 16 28 H 0.13 5.37 5.79 -2.91 -0.02 5.35 16 29 H 0.43 9.85 8.34 -92.71 -0.77 9.07 16 30 H 0.11 3.82 8.14 -2.39 -0.02 3.80 16 31 H 0.11 3.84 8.14 -2.39 -0.02 3.82 16 32 H -0.02 -0.98 8.10 -2.39 -0.02 -1.00 16 33 H -0.02 -0.99 8.10 -2.39 -0.02 -1.01 16 34 H 0.26 15.64 8.31 -92.71 -0.77 14.86 16 Total: -1.00 -79.20 300.35 4.83 -74.37 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: 0.36 Total: 10.00 kcal Atomic # 6 Polarization: -15.57 SS G_CDS: 3.95 Total: -11.62 kcal Atomic # 7 Polarization: -79.40 SS G_CDS: -1.32 Total: -80.72 kcal Atomic # 8 Polarization: -33.51 SS G_CDS: -0.97 Total: -34.48 kcal Atomic # 9 Polarization: -4.66 SS G_CDS: 0.78 Total: -3.89 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -79.20 4.83 -74.37 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291855625.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.949 kcal (2) G-P(sol) polarization free energy of solvation -79.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds