Wall clock time and date at job start Mon Mar 30 2020 00:58:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35959 * 116.99801 * 2 1 4 4 C 1.38566 * 120.02544 * 359.72961 * 3 2 1 5 5 C 1.38781 * 119.90020 * 179.79202 * 4 3 2 6 6 N 1.40015 * 120.02328 * 180.22686 * 5 4 3 7 7 C 1.34780 * 120.00262 * 213.59737 * 6 5 4 8 8 O 1.21293 * 119.99784 * 5.27583 * 7 6 5 9 9 C 1.50699 * 120.00173 * 185.27643 * 7 6 5 10 10 C 1.52998 * 109.47078 * 179.97438 * 9 7 6 11 11 C 1.50699 * 109.47458 * 179.97438 * 10 9 7 12 12 H 1.08001 * 119.99469 * 359.97438 * 11 10 9 13 13 C 1.37873 * 120.00103 * 179.97438 * 11 10 9 14 14 N 1.31507 * 120.00263 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99595 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.47084 * 90.00517 * 15 13 11 17 17 H 1.48504 * 109.47109 * 209.99517 * 15 13 11 18 18 H 1.48497 * 109.47546 * 330.00509 * 15 13 11 19 19 C 1.38878 * 119.95138 * 0.50296 * 5 4 3 20 20 C 1.38171 * 120.05728 * 359.72420 * 19 5 4 21 21 C 1.38350 * 120.09567 * 0.02562 * 20 19 5 22 22 F 1.35105 * 119.97453 * 179.97438 * 21 20 19 23 23 H 1.09001 * 109.47640 * 59.99821 * 1 2 3 24 24 H 1.08999 * 109.47595 * 299.99365 * 1 2 3 25 25 H 1.09008 * 109.46834 * 179.97438 * 1 2 3 26 26 H 1.08001 * 120.05047 * 359.97438 * 4 3 2 27 27 H 0.97000 * 120.00461 * 33.60026 * 6 5 4 28 28 H 1.08999 * 109.47185 * 299.99866 * 9 7 6 29 29 H 1.09004 * 109.47119 * 60.00121 * 9 7 6 30 30 H 1.09003 * 109.47471 * 300.00149 * 10 9 7 31 31 H 1.09004 * 109.47030 * 60.00087 * 10 9 7 32 32 H 0.97005 * 120.00017 * 179.97438 * 14 13 11 33 33 H 1.08007 * 119.97086 * 179.70943 * 19 5 4 34 34 H 1.07994 * 119.95033 * 180.02562 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2920 2.3738 -0.0057 5 6 1.9247 3.6090 -0.0013 6 7 1.1651 4.7852 -0.0022 7 6 1.6186 5.8799 -0.6446 8 8 2.6365 5.8194 -1.3014 9 6 0.8610 7.1789 -0.5468 10 6 1.5841 8.2535 -1.3611 11 6 0.8262 9.5525 -1.2640 12 1 -0.0808 9.6060 -0.6801 13 6 1.2907 10.6724 -1.9204 14 7 2.3948 10.6071 -2.6317 15 14 0.3507 12.2823 -1.8004 16 1 0.8494 13.0612 -0.6385 17 1 0.5518 13.0668 -3.0451 18 1 -1.0960 11.9988 -1.6220 19 6 3.3117 3.6776 -0.0018 20 6 4.0620 2.5173 -0.0009 21 6 3.4335 1.2848 0.0000 22 9 4.1695 0.1518 0.0003 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 0.5137 0.8900 25 1 -0.3633 -1.0278 -0.0005 26 1 0.2134 2.3187 -0.0105 27 1 0.3124 4.8124 0.4595 28 1 -0.1468 7.0422 -0.9389 29 1 0.8059 7.4898 0.4965 30 1 2.5918 8.3902 -0.9687 31 1 1.6395 7.9429 -2.4045 32 1 2.7214 11.3950 -3.0938 33 1 3.8045 4.6387 -0.0031 34 1 5.1405 2.5726 -0.0009 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291861380.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:45 Heat of formation + Delta-G solvation = -99.978990 kcal Electronic energy + Delta-G solvation = -19276.087599 eV Core-core repulsion = 15895.755105 eV Total energy + Delta-G solvation = -3380.332494 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -48.75096 -40.60057 -39.43437 -37.36909 -34.41887 -33.57499 -31.22577 -30.50800 -29.41860 -27.43443 -25.77760 -23.12873 -22.81091 -21.40611 -19.89721 -18.58815 -17.44091 -17.36852 -16.62626 -16.29048 -16.12327 -15.66368 -15.16265 -15.11895 -14.52647 -14.41313 -14.39628 -13.56385 -13.16287 -13.01197 -12.68066 -12.31833 -12.25571 -11.97950 -11.55864 -11.35709 -11.25606 -10.98365 -10.66022 -10.08808 -10.04186 -9.78015 -9.35140 -9.15648 -8.79436 -8.39006 -7.90721 -6.02535 -4.07591 0.97181 1.17289 2.89228 2.90026 3.17326 3.29419 3.36138 3.38270 3.56861 4.17937 4.41942 4.58857 4.73136 4.86466 5.00545 5.05172 5.16765 5.19974 5.32768 5.34982 5.57233 5.77104 6.03495 6.05821 6.19799 6.20841 6.33911 6.69448 6.74107 7.10224 7.52655 7.66079 7.74879 7.98077 8.27614 8.46247 9.00131 9.56590 11.08301 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.042592 B = 0.003328 C = 0.003138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.249947 B = 8410.753173 C = 8921.884974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.310 6.310 3 C 0.114 3.886 4 C -0.218 4.218 5 C 0.192 3.808 6 N -0.686 5.686 7 C 0.509 3.491 8 O -0.508 6.508 9 C -0.128 4.128 10 C 0.036 3.964 11 C -0.530 4.530 12 H 0.056 0.944 13 C 0.059 3.941 14 N -0.888 5.888 15 Si 0.894 3.106 16 H -0.280 1.280 17 H -0.286 1.286 18 H -0.274 1.274 19 C -0.132 4.132 20 C -0.093 4.093 21 C 0.042 3.958 22 F -0.137 7.137 23 H 0.058 0.942 24 H 0.057 0.943 25 H 0.101 0.899 26 H 0.140 0.860 27 H 0.410 0.590 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.025 0.975 31 H 0.025 0.975 32 H 0.262 0.738 33 H 0.149 0.851 34 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.381 -18.956 7.899 20.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.223 6.223 3 C 0.067 3.933 4 C -0.240 4.240 5 C 0.096 3.904 6 N -0.332 5.332 7 C 0.299 3.701 8 O -0.380 6.380 9 C -0.168 4.168 10 C -0.002 4.002 11 C -0.568 4.568 12 H 0.075 0.925 13 C -0.143 4.143 14 N -0.527 5.527 15 Si 0.721 3.279 16 H -0.206 1.206 17 H -0.212 1.212 18 H -0.199 1.199 19 C -0.152 4.152 20 C -0.112 4.112 21 C 0.021 3.979 22 F -0.116 7.116 23 H 0.076 0.924 24 H 0.076 0.924 25 H 0.120 0.880 26 H 0.157 0.843 27 H 0.246 0.754 28 H 0.102 0.898 29 H 0.104 0.896 30 H 0.043 0.957 31 H 0.043 0.957 32 H 0.071 0.929 33 H 0.167 0.833 34 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -3.435 -19.017 7.285 20.652 hybrid contribution -1.100 0.836 0.219 1.399 sum -4.535 -18.181 7.504 20.185 Atomic orbital electron populations 1.23110 0.78027 1.04144 1.01621 1.86135 1.21665 1.25709 1.88807 1.18633 0.90569 0.84995 0.99118 1.20779 1.00267 0.90271 1.12640 1.17588 0.91064 0.85688 0.96109 1.44037 1.23903 1.10316 1.54919 1.21920 0.85963 0.85227 0.76958 1.90704 1.24785 1.84339 1.38198 1.21929 1.00162 0.91028 1.03715 1.18932 0.95622 0.90445 0.95169 1.21179 1.09732 0.94734 1.31157 0.92534 1.25020 0.95050 0.99056 0.95198 1.69988 1.21424 1.29644 1.31625 0.86578 0.80170 0.83595 0.77521 1.20628 1.21188 1.19870 1.21062 0.92075 0.99466 1.02604 1.20906 1.01098 0.89591 0.99625 1.16896 0.85838 0.82960 1.12168 1.91472 1.76496 1.48973 1.94635 0.92354 0.92421 0.88038 0.84273 0.75386 0.89786 0.89604 0.95654 0.95676 0.92854 0.83302 0.83688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.17 16 2 O -0.31 -3.60 10.36 -19.61 -0.20 -3.80 16 3 C 0.11 1.43 6.69 -39.20 -0.26 1.17 16 4 C -0.22 -2.50 8.95 -39.26 -0.35 -2.85 16 5 C 0.19 2.59 6.28 -83.68 -0.53 2.06 16 6 N -0.69 -8.99 5.34 -9.86 -0.05 -9.05 16 7 C 0.51 8.99 7.57 -10.98 -0.08 8.91 16 8 O -0.51 -11.02 13.67 5.55 0.08 -10.94 16 9 C -0.13 -2.39 5.64 -27.88 -0.16 -2.54 16 10 C 0.04 0.92 4.26 -27.88 -0.12 0.80 16 11 C -0.53 -14.50 9.11 -34.44 -0.31 -14.81 16 12 H 0.06 1.45 7.74 -52.49 -0.41 1.05 16 13 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 14 N -0.89 -26.76 13.29 55.43 0.74 -26.03 16 15 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 16 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 17 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 18 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 19 C -0.13 -1.90 8.65 -39.37 -0.34 -2.24 16 20 C -0.09 -1.19 10.01 -39.56 -0.40 -1.59 16 21 C 0.04 0.57 7.31 -39.28 -0.29 0.28 16 22 F -0.14 -1.93 17.11 2.25 0.04 -1.89 16 23 H 0.06 0.37 7.65 -51.93 -0.40 -0.03 16 24 H 0.06 0.33 7.67 -51.93 -0.40 -0.07 16 25 H 0.10 0.50 8.14 -51.92 -0.42 0.08 16 26 H 0.14 1.19 6.30 -52.49 -0.33 0.86 16 27 H 0.41 3.82 8.82 -40.82 -0.36 3.46 16 28 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 29 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 30 H 0.03 0.71 8.10 -51.93 -0.42 0.29 16 31 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 32 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 33 H 0.15 2.38 6.41 -52.48 -0.34 2.05 16 34 H 0.15 1.55 8.06 -52.49 -0.42 1.13 16 LS Contribution 301.94 15.07 4.55 4.55 Total: -1.00 -33.60 301.94 -5.71 -39.31 By element: Atomic # 1 Polarization: 3.70 SS G_CDS: -3.90 Total: -0.20 kcal Atomic # 6 Polarization: -6.13 SS G_CDS: -1.94 Total: -8.08 kcal Atomic # 7 Polarization: -35.76 SS G_CDS: 0.68 Total: -35.07 kcal Atomic # 8 Polarization: -14.62 SS G_CDS: -0.13 Total: -14.75 kcal Atomic # 9 Polarization: -1.93 SS G_CDS: 0.04 Total: -1.89 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -33.60 -5.71 -39.31 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291861380.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.669 kcal (2) G-P(sol) polarization free energy of solvation -33.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds