Wall clock time and date at job start Mon Mar 30 2020 00:58:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35959 * 116.99801 * 2 1 4 4 C 1.38566 * 120.02544 * 359.72961 * 3 2 1 5 5 C 1.38781 * 119.90020 * 179.79202 * 4 3 2 6 6 N 1.40015 * 120.02328 * 180.22686 * 5 4 3 7 7 C 1.34780 * 120.00262 * 213.59737 * 6 5 4 8 8 O 1.21293 * 119.99784 * 5.27583 * 7 6 5 9 9 C 1.50699 * 120.00173 * 185.27643 * 7 6 5 10 10 C 1.52998 * 109.47078 * 179.97438 * 9 7 6 11 11 C 1.50699 * 109.47458 * 179.97438 * 10 9 7 12 12 H 1.08001 * 119.99469 * 359.97438 * 11 10 9 13 13 C 1.37873 * 120.00103 * 179.97438 * 11 10 9 14 14 N 1.31507 * 120.00263 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99595 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.47084 * 90.00517 * 15 13 11 17 17 H 1.48504 * 109.47109 * 209.99517 * 15 13 11 18 18 H 1.48497 * 109.47546 * 330.00509 * 15 13 11 19 19 C 1.38878 * 119.95138 * 0.50296 * 5 4 3 20 20 C 1.38171 * 120.05728 * 359.72420 * 19 5 4 21 21 C 1.38350 * 120.09567 * 0.02562 * 20 19 5 22 22 F 1.35105 * 119.97453 * 179.97438 * 21 20 19 23 23 H 1.09001 * 109.47640 * 59.99821 * 1 2 3 24 24 H 1.08999 * 109.47595 * 299.99365 * 1 2 3 25 25 H 1.09008 * 109.46834 * 179.97438 * 1 2 3 26 26 H 1.08001 * 120.05047 * 359.97438 * 4 3 2 27 27 H 0.97000 * 120.00461 * 33.60026 * 6 5 4 28 28 H 1.08999 * 109.47185 * 299.99866 * 9 7 6 29 29 H 1.09004 * 109.47119 * 60.00121 * 9 7 6 30 30 H 1.09003 * 109.47471 * 300.00149 * 10 9 7 31 31 H 1.09004 * 109.47030 * 60.00087 * 10 9 7 32 32 H 0.97005 * 120.00017 * 179.97438 * 14 13 11 33 33 H 1.08007 * 119.97086 * 179.70943 * 19 5 4 34 34 H 1.07994 * 119.95033 * 180.02562 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2920 2.3738 -0.0057 5 6 1.9247 3.6090 -0.0013 6 7 1.1651 4.7852 -0.0022 7 6 1.6186 5.8799 -0.6446 8 8 2.6365 5.8194 -1.3014 9 6 0.8610 7.1789 -0.5468 10 6 1.5841 8.2535 -1.3611 11 6 0.8262 9.5525 -1.2640 12 1 -0.0808 9.6060 -0.6801 13 6 1.2907 10.6724 -1.9204 14 7 2.3948 10.6071 -2.6317 15 14 0.3507 12.2823 -1.8004 16 1 0.8494 13.0612 -0.6385 17 1 0.5518 13.0668 -3.0451 18 1 -1.0960 11.9988 -1.6220 19 6 3.3117 3.6776 -0.0018 20 6 4.0620 2.5173 -0.0009 21 6 3.4335 1.2848 0.0000 22 9 4.1695 0.1518 0.0003 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 0.5137 0.8900 25 1 -0.3633 -1.0278 -0.0005 26 1 0.2134 2.3187 -0.0105 27 1 0.3124 4.8124 0.4595 28 1 -0.1468 7.0422 -0.9389 29 1 0.8059 7.4898 0.4965 30 1 2.5918 8.3902 -0.9687 31 1 1.6395 7.9429 -2.4045 32 1 2.7214 11.3950 -3.0938 33 1 3.8045 4.6387 -0.0031 34 1 5.1405 2.5726 -0.0009 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291861380.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:45 Heat of formation + Delta-G solvation = -122.876007 kcal Electronic energy + Delta-G solvation = -19277.080488 eV Core-core repulsion = 15895.755105 eV Total energy + Delta-G solvation = -3381.325383 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.81656 -41.72722 -40.52999 -38.44375 -35.67392 -35.53905 -33.06691 -31.48850 -30.51201 -28.28720 -27.51025 -24.57599 -23.80152 -22.89331 -21.27832 -19.58191 -18.93734 -18.45738 -18.06677 -17.33861 -17.16837 -17.05044 -16.52728 -16.39930 -16.03998 -15.48188 -15.26448 -15.07723 -14.50662 -14.21921 -13.99750 -13.88368 -13.47959 -13.24414 -12.81442 -12.69660 -12.49477 -12.37500 -12.23672 -11.90636 -11.64109 -11.30582 -11.21013 -10.79286 -10.55103 -9.75651 -8.98159 -8.17054 -6.30607 -0.06971 0.16465 1.44106 1.46065 1.56318 1.56887 1.93043 2.18695 2.44525 2.52297 3.16760 3.20551 3.64337 3.87011 3.96575 4.03332 4.31181 4.40832 4.42434 4.44985 4.54304 4.55829 4.75480 4.82039 5.05665 5.10919 5.17587 5.29062 5.51605 5.64088 5.65689 5.86638 6.18017 6.22014 6.42001 6.87949 7.15995 7.39865 8.95395 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.042592 B = 0.003328 C = 0.003138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.249947 B = 8410.753173 C = 8921.884974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.326 6.326 3 C 0.115 3.885 4 C -0.200 4.200 5 C 0.178 3.822 6 N -0.660 5.660 7 C 0.514 3.486 8 O -0.559 6.559 9 C -0.116 4.116 10 C 0.039 3.961 11 C -0.542 4.542 12 H 0.078 0.922 13 C -0.007 4.007 14 N -0.937 5.937 15 Si 0.971 3.029 16 H -0.273 1.273 17 H -0.289 1.289 18 H -0.254 1.254 19 C -0.152 4.152 20 C -0.091 4.091 21 C 0.026 3.974 22 F -0.143 7.143 23 H 0.067 0.933 24 H 0.075 0.925 25 H 0.122 0.878 26 H 0.175 0.825 27 H 0.432 0.568 28 H 0.113 0.887 29 H 0.113 0.887 30 H -0.015 1.015 31 H -0.016 1.016 32 H 0.262 0.738 33 H 0.126 0.874 34 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.362 -19.634 9.230 22.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.240 6.240 3 C 0.068 3.932 4 C -0.221 4.221 5 C 0.082 3.918 6 N -0.308 5.308 7 C 0.304 3.696 8 O -0.435 6.435 9 C -0.156 4.156 10 C 0.001 3.999 11 C -0.580 4.580 12 H 0.096 0.904 13 C -0.204 4.204 14 N -0.577 5.577 15 Si 0.796 3.204 16 H -0.198 1.198 17 H -0.215 1.215 18 H -0.178 1.178 19 C -0.172 4.172 20 C -0.110 4.110 21 C 0.006 3.994 22 F -0.122 7.122 23 H 0.086 0.914 24 H 0.094 0.906 25 H 0.141 0.859 26 H 0.192 0.808 27 H 0.272 0.728 28 H 0.131 0.869 29 H 0.131 0.869 30 H 0.004 0.996 31 H 0.003 0.997 32 H 0.071 0.929 33 H 0.144 0.856 34 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -6.477 -19.741 8.665 22.511 hybrid contribution -0.180 0.904 -0.180 0.939 sum -6.657 -18.837 8.485 21.706 Atomic orbital electron populations 1.23492 0.75514 1.06141 1.02909 1.86138 1.24282 1.25107 1.88449 1.18732 0.90365 0.85888 0.98229 1.20966 1.01836 0.88669 1.10667 1.17695 0.90778 0.86307 0.97005 1.43575 1.24418 1.09027 1.53766 1.21654 0.85084 0.86045 0.76774 1.90703 1.26934 1.85141 1.40739 1.21676 1.00386 0.89490 1.04004 1.18726 0.94548 0.92770 0.93822 1.21714 1.10260 0.95276 1.30702 0.90386 1.26106 0.95971 1.03560 0.94784 1.70168 1.23644 1.30840 1.33085 0.85354 0.79449 0.78267 0.77374 1.19837 1.21461 1.17797 1.20981 0.93047 0.98935 1.04273 1.20983 1.01870 0.89117 0.99039 1.17117 0.86650 0.82792 1.12877 1.91451 1.76781 1.49226 1.94755 0.91420 0.90618 0.85948 0.80767 0.72771 0.86928 0.86918 0.99641 0.99733 0.92926 0.85603 0.82347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.14 9.81 113.37 1.11 1.25 16 2 O -0.33 -6.79 10.36 -93.08 -0.96 -7.75 16 3 C 0.12 2.68 6.69 22.51 0.15 2.83 16 4 C -0.20 -4.04 8.95 22.48 0.20 -3.84 16 5 C 0.18 4.55 6.28 38.12 0.24 4.79 16 6 N -0.66 -16.00 5.34 -303.49 -1.62 -17.63 16 7 C 0.51 17.98 7.57 87.66 0.66 18.64 16 8 O -0.56 -25.27 13.67 -3.07 -0.04 -25.31 16 9 C -0.12 -4.17 5.64 29.85 0.17 -4.00 16 10 C 0.04 2.06 4.26 29.85 0.13 2.18 16 11 C -0.54 -29.54 9.11 25.60 0.23 -29.31 16 12 H 0.08 3.83 7.74 -2.91 -0.02 3.81 16 13 C -0.01 -0.38 5.46 84.65 0.46 0.08 16 14 N -0.94 -58.27 13.29 21.44 0.28 -57.99 16 15 Si 0.97 43.14 29.54 68.60 2.03 45.16 16 16 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 17 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 18 H -0.25 -10.40 7.11 99.48 0.71 -9.70 16 19 C -0.15 -4.44 8.65 22.41 0.19 -4.25 16 20 C -0.09 -2.36 10.01 22.28 0.22 -2.14 16 21 C 0.03 0.69 7.31 22.46 0.16 0.85 16 22 F -0.14 -3.98 17.11 44.97 0.77 -3.21 16 23 H 0.07 0.60 7.65 -2.39 -0.02 0.58 16 24 H 0.08 0.54 7.67 -2.39 -0.02 0.52 16 25 H 0.12 0.77 8.14 -2.38 -0.02 0.75 16 26 H 0.18 2.19 6.30 -2.91 -0.02 2.17 16 27 H 0.43 6.48 8.82 -92.71 -0.82 5.66 16 28 H 0.11 3.42 8.14 -2.39 -0.02 3.40 16 29 H 0.11 3.46 8.14 -2.39 -0.02 3.44 16 30 H -0.01 -0.89 8.10 -2.39 -0.02 -0.91 16 31 H -0.02 -0.95 8.10 -2.39 -0.02 -0.97 16 32 H 0.26 15.32 8.31 -92.70 -0.77 14.55 16 33 H 0.13 4.29 6.41 -2.91 -0.02 4.27 16 34 H 0.16 3.47 8.06 -2.91 -0.02 3.45 16 Total: -1.00 -76.43 301.94 4.71 -71.73 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: 0.32 Total: 7.90 kcal Atomic # 6 Polarization: -16.84 SS G_CDS: 3.94 Total: -12.91 kcal Atomic # 7 Polarization: -74.28 SS G_CDS: -1.34 Total: -75.61 kcal Atomic # 8 Polarization: -32.05 SS G_CDS: -1.01 Total: -33.06 kcal Atomic # 9 Polarization: -3.98 SS G_CDS: 0.77 Total: -3.21 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.16 kcal Total: -76.43 4.71 -71.73 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291861380.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.150 kcal (2) G-P(sol) polarization free energy of solvation -76.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds