Wall clock time and date at job start Mon Mar 30 2020 00:53:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46506 * 119.99936 * 2 1 4 4 C 1.53000 * 109.46992 * 90.00137 * 3 2 1 5 5 C 1.50696 * 109.47110 * 179.97438 * 4 3 2 6 6 C 1.33385 * 125.20086 * 90.00413 * 5 4 3 7 7 C 1.38431 * 114.91942 * 179.97438 * 6 5 4 8 8 C 1.33384 * 114.92030 * 359.97438 * 7 6 5 9 9 S 1.75880 * 125.20437 * 269.69514 * 5 4 3 10 10 C 1.34773 * 120.00036 * 180.28035 * 2 1 3 11 11 O 1.21281 * 120.00220 * 179.72597 * 10 2 1 12 12 C 1.50706 * 120.00080 * 359.72107 * 10 2 1 13 13 C 1.52992 * 109.47274 * 180.02562 * 12 10 2 14 14 C 1.50696 * 109.47278 * 180.02562 * 13 12 10 15 15 H 1.08004 * 119.99953 * 359.97438 * 14 13 12 16 16 C 1.37871 * 120.00439 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00481 * 179.97438 * 16 14 13 18 18 Si 1.86801 * 119.99745 * 359.97438 * 16 14 13 19 19 H 1.48504 * 109.47209 * 90.00365 * 18 16 14 20 20 H 1.48501 * 109.47358 * 209.99857 * 18 16 14 21 21 H 1.48501 * 109.47275 * 330.00116 * 18 16 14 22 22 H 1.09003 * 109.47269 * 89.99349 * 1 2 3 23 23 H 1.08994 * 109.47173 * 210.00167 * 1 2 3 24 24 H 1.09005 * 109.47077 * 330.00338 * 1 2 3 25 25 H 1.09000 * 109.46803 * 209.99571 * 3 2 1 26 26 H 1.09000 * 109.47214 * 330.00364 * 3 2 1 27 27 H 1.09000 * 109.47214 * 300.00285 * 4 3 2 28 28 H 1.09008 * 109.47142 * 59.99450 * 4 3 2 29 29 H 1.08004 * 122.54337 * 359.95350 * 6 5 4 30 30 H 1.07997 * 122.53746 * 180.02562 * 7 6 5 31 31 H 1.07997 * 125.20330 * 180.02562 * 8 7 6 32 32 H 1.09004 * 109.46762 * 300.00389 * 12 10 2 33 33 H 1.08998 * 109.46924 * 59.99727 * 12 10 2 34 34 H 1.09004 * 109.47116 * 299.99649 * 13 12 10 35 35 H 1.08993 * 109.47352 * 59.99893 * 13 12 10 36 36 H 0.97000 * 120.00722 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7104 1.4425 5 6 3.2065 3.0152 1.4425 6 6 2.6476 4.2263 1.4425 7 6 3.5430 5.2819 1.4431 8 6 4.8291 4.9281 1.4442 9 16 4.9581 3.1740 1.4504 10 6 2.1389 -1.1671 -0.0057 11 8 3.3517 -1.1672 -0.0107 12 6 1.3854 -2.4723 -0.0057 13 6 2.3795 -3.6352 -0.0121 14 6 1.6261 -4.9403 -0.0128 15 1 0.5461 -4.9403 -0.0086 16 6 2.3154 -6.1343 -0.0188 17 7 1.6579 -7.2733 -0.0188 18 14 4.1834 -6.1343 -0.0267 19 1 4.6844 -6.1379 1.3712 20 1 4.6754 -7.3450 -0.7319 21 1 4.6754 -4.9200 -0.7258 22 1 -0.3634 0.0001 -1.0277 23 1 -0.3633 -0.8899 0.5138 24 1 -0.3633 0.8901 0.5138 25 1 3.1499 1.1384 -0.5138 26 1 1.6084 2.0285 -0.5138 27 1 1.5001 1.8407 1.9564 28 1 3.0416 0.9507 1.9564 29 1 1.5774 4.3722 1.4417 30 1 3.2244 6.3139 1.4435 31 1 5.6634 5.6137 1.4452 32 1 0.7624 -2.5322 0.8867 33 1 0.7550 -2.5278 -0.8932 34 1 3.0028 -3.5755 -0.9045 35 1 3.0096 -3.5794 0.8755 36 1 2.1428 -8.1133 -0.0234 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292307403.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:37 Heat of formation + Delta-G solvation = -13.648640 kcal Electronic energy + Delta-G solvation = -17410.431651 eV Core-core repulsion = 14600.055898 eV Total energy + Delta-G solvation = -2810.375753 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.62486 -38.10176 -35.69059 -33.59884 -32.77994 -31.17873 -28.46128 -26.64411 -26.04912 -24.17989 -22.53594 -20.80953 -19.42746 -18.65118 -17.36008 -17.19077 -16.20040 -15.74987 -15.61087 -15.33928 -14.20208 -13.92711 -13.71272 -13.39893 -13.06199 -12.93514 -12.58023 -12.55951 -12.40405 -12.30235 -12.11489 -12.08008 -11.36071 -11.10758 -10.95324 -10.77125 -10.13289 -10.02163 -9.77210 -9.24253 -9.15709 -8.97811 -8.65189 -8.50758 -8.44091 -6.02461 -4.01168 0.80661 1.46959 1.86440 2.53062 3.08311 3.20056 3.38676 3.45275 3.56495 4.51751 4.65311 4.77509 4.86569 5.07567 5.15490 5.17655 5.30226 5.33104 5.35863 5.44888 5.49262 5.70010 5.72365 5.94751 5.96283 6.06584 6.08720 6.11432 6.30925 6.62272 6.70577 7.37260 7.44316 7.59002 7.79958 8.49372 8.61228 9.00426 9.60760 11.10366 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.031667 B = 0.003721 C = 0.003385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.985285 B = 7523.524560 C = 8270.533731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.629 5.629 3 C 0.122 3.878 4 C -0.067 4.067 5 C -0.164 4.164 6 C -0.146 4.146 7 C -0.135 4.135 8 C -0.224 4.224 9 S 0.110 5.890 10 C 0.510 3.490 11 O -0.537 6.537 12 C -0.120 4.120 13 C 0.001 3.999 14 C -0.524 4.524 15 H 0.072 0.928 16 C 0.069 3.931 17 N -0.904 5.904 18 Si 0.877 3.123 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.261 1.261 22 H 0.055 0.945 23 H 0.079 0.921 24 H 0.065 0.935 25 H 0.083 0.917 26 H 0.075 0.925 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.138 0.862 30 H 0.137 0.863 31 H 0.161 0.839 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.023 0.977 35 H 0.018 0.982 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.173 25.557 2.477 25.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.364 5.364 3 C -0.002 4.002 4 C -0.107 4.107 5 C -0.282 4.282 6 C -0.176 4.176 7 C -0.165 4.165 8 C -0.359 4.359 9 S 0.374 5.626 10 C 0.300 3.700 11 O -0.412 6.412 12 C -0.160 4.160 13 C -0.037 4.037 14 C -0.562 4.562 15 H 0.091 0.909 16 C -0.132 4.132 17 N -0.543 5.543 18 Si 0.704 3.296 19 H -0.202 1.202 20 H -0.214 1.214 21 H -0.185 1.185 22 H 0.073 0.927 23 H 0.097 0.903 24 H 0.084 0.916 25 H 0.102 0.898 26 H 0.093 0.907 27 H 0.101 0.899 28 H 0.099 0.901 29 H 0.156 0.844 30 H 0.155 0.845 31 H 0.179 0.821 32 H 0.104 0.896 33 H 0.104 0.896 34 H 0.042 0.958 35 H 0.037 0.963 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.725 24.334 2.472 24.520 hybrid contribution -0.323 1.039 0.052 1.090 sum 1.402 25.374 2.523 25.537 Atomic orbital electron populations 1.21784 0.79480 1.03209 1.01871 1.48053 1.06990 1.05796 1.75599 1.21346 0.98368 0.85242 0.95195 1.20561 0.99554 0.91750 0.98848 1.24457 0.96392 0.98806 1.08564 1.20112 1.01096 0.91018 1.05369 1.20142 0.92168 1.00369 1.03852 1.25659 1.00900 0.98338 1.11037 1.84651 1.04217 1.01621 1.72115 1.21613 0.88410 0.85709 0.74267 1.90649 1.14449 1.87392 1.48755 1.21694 1.00221 0.90942 1.03137 1.19378 0.94466 0.92210 0.97636 1.21108 0.94953 0.88868 1.51300 0.90947 1.24968 0.98481 0.95450 0.94329 1.69909 1.35843 0.97425 1.51116 0.86803 0.86229 0.77820 0.78756 1.20234 1.21434 1.18519 0.92662 0.90265 0.91574 0.89814 0.90661 0.89869 0.90070 0.84394 0.84512 0.82104 0.89627 0.89615 0.95848 0.96317 0.92719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.79 10.24 59.85 0.61 1.41 16 2 N -0.63 -8.67 2.87 -181.57 -0.52 -9.20 16 3 C 0.12 1.49 5.39 -4.04 -0.02 1.47 16 4 C -0.07 -0.76 6.03 -27.89 -0.17 -0.92 16 5 C -0.16 -1.77 5.76 -36.01 -0.21 -1.98 16 6 C -0.15 -1.35 10.05 -41.21 -0.41 -1.77 16 7 C -0.13 -1.17 10.18 -41.21 -0.42 -1.59 16 8 C -0.22 -2.02 11.23 29.04 0.33 -1.69 16 9 S 0.11 1.21 23.33 -107.50 -2.51 -1.29 16 10 C 0.51 9.43 7.67 -10.98 -0.08 9.34 16 11 O -0.54 -11.96 15.56 5.56 0.09 -11.87 16 12 C -0.12 -2.35 4.19 -27.88 -0.12 -2.46 16 13 C 0.00 0.03 3.33 -27.89 -0.09 -0.07 16 14 C -0.52 -15.05 9.66 -34.44 -0.33 -15.38 16 15 H 0.07 2.16 7.99 -52.48 -0.42 1.74 16 16 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 17 N -0.90 -28.11 13.96 55.43 0.77 -27.33 16 18 Si 0.88 22.73 27.47 -169.99 -4.67 18.06 16 19 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 20 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 21 H -0.26 -6.75 6.54 56.52 0.37 -6.38 16 22 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 23 H 0.08 0.80 6.45 -51.93 -0.33 0.46 16 24 H 0.07 0.49 8.07 -51.93 -0.42 0.07 16 25 H 0.08 1.21 7.41 -51.93 -0.38 0.83 16 26 H 0.07 0.73 8.07 -51.93 -0.42 0.31 16 27 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.08 1.11 8.14 -51.92 -0.42 0.68 16 29 H 0.14 1.02 8.06 -52.48 -0.42 0.60 16 30 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 31 H 0.16 1.08 8.06 -52.49 -0.42 0.66 16 32 H 0.09 1.53 7.41 -51.93 -0.38 1.15 16 33 H 0.09 1.55 8.10 -51.93 -0.42 1.13 16 34 H 0.02 0.61 7.15 -51.93 -0.37 0.24 16 35 H 0.02 0.48 7.53 -51.93 -0.39 0.09 16 36 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 318.25 15.07 4.80 4.80 Total: -1.00 -33.94 318.25 -8.31 -42.25 By element: Atomic # 1 Polarization: 1.52 SS G_CDS: -5.25 Total: -3.73 kcal Atomic # 6 Polarization: -10.67 SS G_CDS: -1.02 Total: -11.69 kcal Atomic # 7 Polarization: -36.78 SS G_CDS: 0.25 Total: -36.53 kcal Atomic # 8 Polarization: -11.96 SS G_CDS: 0.09 Total: -11.87 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -4.67 Total: 18.06 kcal Atomic # 16 Polarization: 1.21 SS G_CDS: -2.51 Total: -1.29 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -33.94 -8.31 -42.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292307403.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.604 kcal (2) G-P(sol) polarization free energy of solvation -33.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds