Wall clock time and date at job start Mon Mar 30 2020 00:53:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46506 * 119.99936 * 2 1 4 4 C 1.53000 * 109.46992 * 90.00137 * 3 2 1 5 5 C 1.50696 * 109.47110 * 179.97438 * 4 3 2 6 6 C 1.33385 * 125.20086 * 90.00413 * 5 4 3 7 7 C 1.38431 * 114.91942 * 179.97438 * 6 5 4 8 8 C 1.33384 * 114.92030 * 359.97438 * 7 6 5 9 9 S 1.75880 * 125.20437 * 269.69514 * 5 4 3 10 10 C 1.34773 * 120.00036 * 180.28035 * 2 1 3 11 11 O 1.21281 * 120.00220 * 179.72597 * 10 2 1 12 12 C 1.50706 * 120.00080 * 359.72107 * 10 2 1 13 13 C 1.52992 * 109.47274 * 180.02562 * 12 10 2 14 14 C 1.50696 * 109.47278 * 180.02562 * 13 12 10 15 15 H 1.08004 * 119.99953 * 359.97438 * 14 13 12 16 16 C 1.37871 * 120.00439 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00481 * 179.97438 * 16 14 13 18 18 Si 1.86801 * 119.99745 * 359.97438 * 16 14 13 19 19 H 1.48504 * 109.47209 * 90.00365 * 18 16 14 20 20 H 1.48501 * 109.47358 * 209.99857 * 18 16 14 21 21 H 1.48501 * 109.47275 * 330.00116 * 18 16 14 22 22 H 1.09003 * 109.47269 * 89.99349 * 1 2 3 23 23 H 1.08994 * 109.47173 * 210.00167 * 1 2 3 24 24 H 1.09005 * 109.47077 * 330.00338 * 1 2 3 25 25 H 1.09000 * 109.46803 * 209.99571 * 3 2 1 26 26 H 1.09000 * 109.47214 * 330.00364 * 3 2 1 27 27 H 1.09000 * 109.47214 * 300.00285 * 4 3 2 28 28 H 1.09008 * 109.47142 * 59.99450 * 4 3 2 29 29 H 1.08004 * 122.54337 * 359.95350 * 6 5 4 30 30 H 1.07997 * 122.53746 * 180.02562 * 7 6 5 31 31 H 1.07997 * 125.20330 * 180.02562 * 8 7 6 32 32 H 1.09004 * 109.46762 * 300.00389 * 12 10 2 33 33 H 1.08998 * 109.46924 * 59.99727 * 12 10 2 34 34 H 1.09004 * 109.47116 * 299.99649 * 13 12 10 35 35 H 1.08993 * 109.47352 * 59.99893 * 13 12 10 36 36 H 0.97000 * 120.00722 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7104 1.4425 5 6 3.2065 3.0152 1.4425 6 6 2.6476 4.2263 1.4425 7 6 3.5430 5.2819 1.4431 8 6 4.8291 4.9281 1.4442 9 16 4.9581 3.1740 1.4504 10 6 2.1389 -1.1671 -0.0057 11 8 3.3517 -1.1672 -0.0107 12 6 1.3854 -2.4723 -0.0057 13 6 2.3795 -3.6352 -0.0121 14 6 1.6261 -4.9403 -0.0128 15 1 0.5461 -4.9403 -0.0086 16 6 2.3154 -6.1343 -0.0188 17 7 1.6579 -7.2733 -0.0188 18 14 4.1834 -6.1343 -0.0267 19 1 4.6844 -6.1379 1.3712 20 1 4.6754 -7.3450 -0.7319 21 1 4.6754 -4.9200 -0.7258 22 1 -0.3634 0.0001 -1.0277 23 1 -0.3633 -0.8899 0.5138 24 1 -0.3633 0.8901 0.5138 25 1 3.1499 1.1384 -0.5138 26 1 1.6084 2.0285 -0.5138 27 1 1.5001 1.8407 1.9564 28 1 3.0416 0.9507 1.9564 29 1 1.5774 4.3722 1.4417 30 1 3.2244 6.3139 1.4435 31 1 5.6634 5.6137 1.4452 32 1 0.7624 -2.5322 0.8867 33 1 0.7550 -2.5278 -0.8932 34 1 3.0028 -3.5755 -0.9045 35 1 3.0096 -3.5794 0.8755 36 1 2.1428 -8.1133 -0.0234 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292307403.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:36 Heat of formation + Delta-G solvation = -34.462320 kcal Electronic energy + Delta-G solvation = -17411.334200 eV Core-core repulsion = 14600.055898 eV Total energy + Delta-G solvation = -2811.278302 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.95748 -38.86729 -36.89083 -35.59181 -33.95799 -33.00348 -29.44247 -28.08766 -27.21410 -25.28200 -23.58168 -22.51693 -20.14106 -20.03728 -19.09649 -18.18475 -17.72192 -16.91101 -16.76885 -16.33159 -16.20396 -15.05378 -14.99110 -14.83212 -14.46422 -14.05254 -13.78215 -13.66902 -13.45188 -13.32045 -13.11793 -13.04855 -12.93182 -12.84692 -12.12022 -11.98322 -11.91178 -11.76751 -11.55844 -11.39956 -10.79002 -10.72598 -9.89567 -9.46422 -9.40826 -8.32511 -6.35091 0.07718 0.71231 1.14551 1.31628 1.33702 1.48973 1.64629 1.85394 2.08579 2.33946 3.03149 3.70808 3.86269 4.05251 4.16239 4.26325 4.35476 4.37048 4.47545 4.48315 4.56253 4.72942 4.75697 4.85972 4.93453 5.02365 5.08070 5.23632 5.32471 5.37732 5.43074 5.59705 5.61644 5.63199 6.22399 6.37098 6.71052 7.22190 7.30405 8.83114 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.031667 B = 0.003721 C = 0.003385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.985285 B = 7523.524560 C = 8270.533731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.617 5.617 3 C 0.123 3.877 4 C -0.056 4.056 5 C -0.181 4.181 6 C -0.133 4.133 7 C -0.138 4.138 8 C -0.215 4.215 9 S 0.043 5.957 10 C 0.508 3.492 11 O -0.586 6.586 12 C -0.113 4.113 13 C 0.005 3.995 14 C -0.527 4.527 15 H 0.052 0.948 16 C 0.015 3.985 17 N -0.943 5.943 18 Si 0.936 3.064 19 H -0.269 1.269 20 H -0.277 1.277 21 H -0.264 1.264 22 H 0.070 0.930 23 H 0.078 0.922 24 H 0.101 0.899 25 H 0.054 0.946 26 H 0.110 0.890 27 H 0.107 0.893 28 H 0.048 0.952 29 H 0.165 0.835 30 H 0.167 0.833 31 H 0.182 0.818 32 H 0.103 0.897 33 H 0.101 0.899 34 H 0.007 0.993 35 H 0.006 0.994 36 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.239 28.415 2.589 28.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.349 5.349 3 C 0.000 4.000 4 C -0.097 4.097 5 C -0.299 4.299 6 C -0.163 4.163 7 C -0.168 4.168 8 C -0.350 4.350 9 S 0.306 5.694 10 C 0.298 3.702 11 O -0.466 6.466 12 C -0.152 4.152 13 C -0.033 4.033 14 C -0.565 4.565 15 H 0.071 0.929 16 C -0.183 4.183 17 N -0.583 5.583 18 Si 0.760 3.240 19 H -0.194 1.194 20 H -0.202 1.202 21 H -0.189 1.189 22 H 0.088 0.912 23 H 0.096 0.904 24 H 0.120 0.880 25 H 0.072 0.928 26 H 0.128 0.872 27 H 0.125 0.875 28 H 0.067 0.933 29 H 0.182 0.818 30 H 0.184 0.816 31 H 0.200 0.800 32 H 0.121 0.879 33 H 0.119 0.881 34 H 0.025 0.975 35 H 0.024 0.976 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.609 27.231 2.587 27.360 hybrid contribution -0.108 0.263 0.016 0.284 sum 0.501 27.493 2.603 27.621 Atomic orbital electron populations 1.22125 0.76599 1.05005 1.03439 1.48021 1.08724 1.04895 1.73296 1.21473 0.97536 0.84949 0.96044 1.20403 1.00123 0.91253 0.97873 1.24387 0.95438 0.99180 1.10882 1.20469 1.02540 0.90277 1.03023 1.20523 0.91739 1.01674 1.02873 1.25930 1.02109 0.96585 1.10374 1.84910 1.06192 1.04709 1.73562 1.21328 0.87670 0.86758 0.74437 1.90633 1.16350 1.88148 1.51498 1.21507 0.99105 0.89863 1.04768 1.19223 0.95032 0.92892 0.96146 1.21418 0.94393 0.90500 1.50234 0.92934 1.25769 1.02907 0.95287 0.94308 1.70012 1.37652 0.98127 1.52526 0.85869 0.81044 0.77909 0.79135 1.19389 1.20192 1.18853 0.91156 0.90362 0.88027 0.92773 0.87158 0.87525 0.93335 0.81754 0.81586 0.80027 0.87899 0.88093 0.97454 0.97557 0.92343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.14 10.24 127.77 1.31 2.45 16 2 N -0.62 -15.85 2.87 -846.74 -2.43 -18.29 16 3 C 0.12 2.80 5.39 86.38 0.47 3.26 16 4 C -0.06 -1.20 6.03 29.85 0.18 -1.02 16 5 C -0.18 -3.66 5.76 24.59 0.14 -3.52 16 6 C -0.13 -2.03 10.05 21.22 0.21 -1.81 16 7 C -0.14 -1.93 10.18 21.22 0.22 -1.72 16 8 C -0.21 -3.46 11.23 66.72 0.75 -2.71 16 9 S 0.04 0.96 23.33 -56.49 -1.32 -0.36 16 10 C 0.51 18.65 7.67 87.66 0.67 19.32 16 11 O -0.59 -26.82 15.56 -3.03 -0.05 -26.87 16 12 C -0.11 -4.34 4.19 29.85 0.13 -4.22 16 13 C 0.01 0.26 3.33 29.84 0.10 0.36 16 14 C -0.53 -30.69 9.66 25.60 0.25 -30.45 16 15 H 0.05 3.19 7.99 -2.91 -0.02 3.17 16 16 C 0.02 0.90 5.47 84.65 0.46 1.37 16 17 N -0.94 -59.32 13.96 21.45 0.30 -59.02 16 18 Si 0.94 47.48 27.47 68.60 1.88 49.37 16 19 H -0.27 -13.21 7.11 99.48 0.71 -12.50 16 20 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 21 H -0.26 -13.44 6.54 99.48 0.65 -12.79 16 22 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 23 H 0.08 1.33 6.45 -2.39 -0.02 1.32 16 24 H 0.10 0.99 8.07 -2.38 -0.02 0.97 16 25 H 0.05 1.58 7.41 -2.39 -0.02 1.56 16 26 H 0.11 1.75 8.07 -2.39 -0.02 1.73 16 27 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.05 1.35 8.14 -2.38 -0.02 1.33 16 29 H 0.17 1.61 8.06 -2.91 -0.02 1.59 16 30 H 0.17 1.36 8.06 -2.91 -0.02 1.34 16 31 H 0.18 2.03 8.06 -2.91 -0.02 2.01 16 32 H 0.10 3.57 7.41 -2.39 -0.02 3.55 16 33 H 0.10 3.54 8.10 -2.39 -0.02 3.52 16 34 H 0.01 0.38 7.15 -2.39 -0.02 0.36 16 35 H 0.01 0.32 7.53 -2.39 -0.02 0.30 16 36 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 Total: -1.00 -75.70 318.25 4.27 -71.43 By element: Atomic # 1 Polarization: 1.42 SS G_CDS: 1.00 Total: 2.42 kcal Atomic # 6 Polarization: -23.57 SS G_CDS: 4.88 Total: -18.69 kcal Atomic # 7 Polarization: -75.17 SS G_CDS: -2.13 Total: -77.30 kcal Atomic # 8 Polarization: -26.82 SS G_CDS: -0.05 Total: -26.87 kcal Atomic # 14 Polarization: 47.48 SS G_CDS: 1.88 Total: 49.37 kcal Atomic # 16 Polarization: 0.96 SS G_CDS: -1.32 Total: -0.36 kcal Total: -75.70 4.27 -71.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292307403.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.970 kcal (2) G-P(sol) polarization free energy of solvation -75.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds