Wall clock time and date at job start Mon Mar 30 2020 00:58:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.36021 * 117.00321 * 2 1 4 4 C 1.38658 * 119.98960 * 359.72070 * 3 2 1 5 5 C 1.38122 * 120.03856 * 180.28040 * 4 3 2 6 6 C 1.38852 * 120.02605 * 359.97438 * 5 4 3 7 7 N 1.40103 * 120.00986 * 180.02562 * 6 5 4 8 8 C 1.34770 * 120.00129 * 213.28457 * 7 6 5 9 9 O 1.21299 * 120.00167 * 5.26795 * 8 7 6 10 10 C 1.50696 * 120.00334 * 185.27488 * 8 7 6 11 11 C 1.52998 * 109.47450 * 179.97438 * 10 8 7 12 12 C 1.50701 * 109.47118 * 179.97438 * 11 10 8 13 13 H 1.07999 * 120.00516 * 359.97438 * 12 11 10 14 14 C 1.37879 * 119.99832 * 180.02562 * 12 11 10 15 15 N 1.31510 * 120.00168 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 120.00096 * 179.97438 * 14 12 11 17 17 H 1.48508 * 109.46949 * 359.97438 * 16 14 12 18 18 H 1.48493 * 109.47123 * 119.99643 * 16 14 12 19 19 H 1.48494 * 109.47152 * 239.99794 * 16 14 12 20 20 C 1.38827 * 119.98333 * 359.97438 * 6 5 4 21 21 C 1.38268 * 119.96280 * 0.02562 * 20 6 5 22 22 F 1.35105 * 120.01399 * 179.97438 * 21 20 6 23 23 H 1.08996 * 109.46823 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47060 * 300.00716 * 1 2 3 25 25 H 1.08999 * 109.46846 * 60.00063 * 1 2 3 26 26 H 1.07993 * 119.98200 * 0.25478 * 4 3 2 27 27 H 1.08001 * 119.98953 * 180.02562 * 5 4 3 28 28 H 0.97004 * 120.00032 * 33.28150 * 7 6 5 29 29 H 1.09000 * 109.47311 * 299.99853 * 10 8 7 30 30 H 1.08999 * 109.47618 * 59.99618 * 10 8 7 31 31 H 1.09007 * 109.47165 * 299.99656 * 11 10 8 32 32 H 1.08999 * 109.47347 * 59.99651 * 11 10 8 33 33 H 0.97001 * 120.00183 * 180.02562 * 15 14 12 34 34 H 1.07999 * 120.01825 * 180.02562 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0466 1.2119 0.0000 4 6 1.2912 2.3747 -0.0059 5 6 1.9173 3.6059 -0.0117 6 6 3.3038 3.6803 -0.0112 7 7 3.9386 4.9293 -0.0166 8 6 5.1141 5.0850 -0.6571 9 8 5.5755 4.1718 -1.3085 10 6 5.8553 6.3938 -0.5640 11 6 7.1496 6.3057 -1.3751 12 6 7.8906 7.6147 -1.2824 13 1 7.4793 8.4283 -0.7033 14 6 9.0931 7.7741 -1.9378 15 7 9.5938 6.7836 -2.6434 16 14 10.0113 9.3969 -1.8235 17 1 9.2415 10.3425 -0.9758 18 1 11.3489 9.1675 -1.2209 19 1 10.1729 9.9710 -3.1835 20 6 4.0611 2.5167 -0.0043 21 6 3.4337 1.2845 0.0016 22 9 4.1696 0.1515 0.0078 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5140 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 0.2128 2.3177 -0.0063 27 1 1.3282 4.5111 -0.0159 28 1 3.5319 5.6819 0.4407 29 1 5.2310 7.1941 -0.9612 30 1 6.0940 6.6028 0.4788 31 1 7.7739 5.5055 -0.9774 32 1 6.9114 6.0965 -2.4179 33 1 10.4400 6.8956 -3.1042 34 1 5.1395 2.5739 -0.0035 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292350450.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:48 Heat of formation + Delta-G solvation = -123.692807 kcal Electronic energy + Delta-G solvation = -19279.921937 eV Core-core repulsion = 15898.561135 eV Total energy + Delta-G solvation = -3381.360802 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.92137 -41.65070 -40.55438 -38.46044 -35.59898 -35.40005 -33.05786 -31.82057 -30.33434 -28.32824 -27.41398 -24.45920 -23.95911 -22.79080 -21.28299 -19.50643 -18.94559 -18.74878 -18.04608 -17.32132 -17.07162 -16.81186 -16.51296 -16.42072 -16.06982 -15.79175 -15.22210 -15.05344 -14.48259 -14.28752 -13.99748 -13.64866 -13.42897 -13.26451 -12.94646 -12.84768 -12.45111 -12.36129 -12.16075 -11.92677 -11.64796 -11.28687 -11.02468 -10.78294 -10.57315 -9.98269 -8.83107 -8.18046 -6.31957 0.02534 0.07937 1.43116 1.44280 1.57467 1.57824 1.99147 2.23972 2.43859 2.53731 3.15639 3.16950 3.64419 3.83577 4.00330 4.11617 4.37587 4.43885 4.45007 4.49379 4.55324 4.57490 4.76571 4.90643 5.02600 5.05944 5.15644 5.27497 5.50622 5.62468 5.69307 5.85617 6.16802 6.29727 6.45862 6.87131 7.19900 7.38640 8.94825 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.048852 B = 0.003311 C = 0.003149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.022379 B = 8455.153431 C = 8888.586658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.337 6.337 3 C 0.074 3.926 4 C -0.147 4.147 5 C -0.096 4.096 6 C 0.132 3.868 7 N -0.657 5.657 8 C 0.510 3.490 9 O -0.567 6.567 10 C -0.115 4.115 11 C 0.039 3.961 12 C -0.540 4.540 13 H 0.079 0.921 14 C -0.009 4.009 15 N -0.939 5.939 16 Si 0.974 3.026 17 H -0.250 1.250 18 H -0.283 1.283 19 H -0.282 1.282 20 C -0.145 4.145 21 C 0.055 3.945 22 F -0.150 7.150 23 H 0.117 0.883 24 H 0.077 0.923 25 H 0.072 0.928 26 H 0.185 0.815 27 H 0.181 0.819 28 H 0.434 0.566 29 H 0.115 0.885 30 H 0.112 0.888 31 H -0.019 1.019 32 H -0.017 1.017 33 H 0.262 0.738 34 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.248 -5.686 9.303 26.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.251 6.251 3 C 0.028 3.972 4 C -0.166 4.166 5 C -0.116 4.116 6 C 0.037 3.963 7 N -0.305 5.305 8 C 0.300 3.700 9 O -0.444 6.444 10 C -0.155 4.155 11 C 0.001 3.999 12 C -0.578 4.578 13 H 0.098 0.902 14 C -0.206 4.206 15 N -0.579 5.579 16 Si 0.798 3.202 17 H -0.173 1.173 18 H -0.209 1.209 19 H -0.208 1.208 20 C -0.167 4.167 21 C 0.034 3.966 22 F -0.129 7.129 23 H 0.135 0.865 24 H 0.096 0.904 25 H 0.091 0.909 26 H 0.202 0.798 27 H 0.198 0.802 28 H 0.275 0.725 29 H 0.133 0.867 30 H 0.130 0.870 31 H 0.000 1.000 32 H 0.002 0.998 33 H 0.071 0.929 34 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -23.640 -6.553 8.756 26.047 hybrid contribution 1.159 0.344 -0.210 1.227 sum -22.481 -6.210 8.546 24.839 Atomic orbital electron populations 1.23483 0.75395 1.05953 1.03103 1.86128 1.24394 1.25670 1.88898 1.19043 0.89734 0.87122 1.01327 1.21354 1.01920 0.89345 1.03948 1.21197 0.90761 0.99971 0.99691 1.17607 0.92293 0.84625 1.01753 1.43476 1.22108 1.10948 1.53972 1.21696 0.80554 0.90912 0.76815 1.90709 1.67695 1.44649 1.41397 1.21664 0.97019 0.92861 1.03927 1.18727 0.91771 0.95610 0.93788 1.21747 1.05640 0.99552 1.30837 0.90241 1.26153 0.98865 1.00826 0.94787 1.70187 1.20159 1.34177 1.33391 0.85272 0.78124 0.78779 0.78054 1.17341 1.20868 1.20762 1.20897 1.01046 0.90787 1.03952 1.17029 0.87220 0.82022 1.10301 1.91437 1.77404 1.49448 1.94565 0.86525 0.90435 0.90920 0.79773 0.80191 0.72516 0.86693 0.87004 1.00021 0.99835 0.92930 0.86274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.14 9.81 113.37 1.11 1.25 16 2 O -0.34 -7.50 10.36 -93.79 -0.97 -8.47 16 3 C 0.07 1.80 6.69 22.53 0.15 1.95 16 4 C -0.15 -2.34 9.03 22.34 0.20 -2.14 16 5 C -0.10 -1.61 9.96 22.39 0.22 -1.38 16 6 C 0.13 3.45 6.28 38.11 0.24 3.69 16 7 N -0.66 -16.53 5.35 -303.41 -1.62 -18.15 16 8 C 0.51 18.84 7.57 87.66 0.66 19.50 16 9 O -0.57 -27.39 13.67 -3.09 -0.04 -27.43 16 10 C -0.12 -4.31 5.64 29.85 0.17 -4.14 16 11 C 0.04 2.11 4.26 29.85 0.13 2.23 16 12 C -0.54 -30.09 9.11 25.60 0.23 -29.86 16 13 H 0.08 3.98 7.74 -2.91 -0.02 3.96 16 14 C -0.01 -0.52 5.46 84.66 0.46 -0.06 16 15 N -0.94 -59.61 13.29 21.45 0.28 -59.33 16 16 Si 0.97 43.93 29.54 68.60 2.03 45.95 16 17 H -0.25 -10.28 7.11 99.48 0.71 -9.58 16 18 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 19 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 20 C -0.15 -4.87 8.63 22.42 0.19 -4.68 16 21 C 0.05 1.74 7.31 22.44 0.16 1.90 16 22 F -0.15 -5.37 17.11 44.97 0.77 -4.60 16 23 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 24 H 0.08 0.45 7.67 -2.39 -0.02 0.43 16 25 H 0.07 0.50 7.65 -2.39 -0.02 0.48 16 26 H 0.19 1.29 6.29 -2.91 -0.02 1.27 16 27 H 0.18 1.44 8.06 -2.91 -0.02 1.42 16 28 H 0.43 6.59 8.82 -92.71 -0.82 5.77 16 29 H 0.12 3.60 8.14 -2.39 -0.02 3.58 16 30 H 0.11 3.60 8.14 -2.39 -0.02 3.58 16 31 H -0.02 -1.16 8.10 -2.38 -0.02 -1.18 16 32 H -0.02 -1.04 8.10 -2.39 -0.02 -1.06 16 33 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 34 H 0.12 4.81 6.41 -2.91 -0.02 4.79 16 Total: -1.00 -83.15 301.95 4.70 -78.45 By element: Atomic # 1 Polarization: 4.99 SS G_CDS: 0.32 Total: 5.30 kcal Atomic # 6 Polarization: -15.67 SS G_CDS: 3.94 Total: -11.73 kcal Atomic # 7 Polarization: -76.14 SS G_CDS: -1.34 Total: -77.48 kcal Atomic # 8 Polarization: -34.89 SS G_CDS: -1.01 Total: -35.90 kcal Atomic # 9 Polarization: -5.37 SS G_CDS: 0.77 Total: -4.60 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.95 kcal Total: -83.15 4.70 -78.45 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292350450.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.244 kcal (2) G-P(sol) polarization free energy of solvation -83.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds