Wall clock time and date at job start Mon Mar 30 2020 00:23:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08992 * 109.47062 * 2 1 4 4 C 1.50704 * 109.46719 * 119.99948 * 2 1 3 5 5 C 1.33388 * 125.20126 * 254.44828 * 4 2 1 6 6 C 1.38419 * 114.92030 * 180.02562 * 5 4 2 7 7 C 1.33386 * 114.92056 * 0.02562 * 6 5 4 8 8 S 1.75879 * 125.20267 * 74.47787 * 4 2 1 9 9 N 1.46498 * 109.46853 * 239.99534 * 2 1 3 10 10 C 1.46496 * 120.00209 * 306.76389 * 9 2 1 11 11 C 1.34774 * 119.99820 * 126.76281 * 9 2 1 12 12 O 1.21279 * 120.00018 * 0.02562 * 11 9 2 13 13 C 1.50702 * 120.00258 * 179.97438 * 11 9 2 14 14 C 1.52998 * 109.47431 * 179.97438 * 13 11 9 15 15 C 1.50706 * 109.47111 * 179.97438 * 14 13 11 16 16 H 1.07995 * 119.99649 * 0.02562 * 15 14 13 17 17 C 1.37879 * 119.99533 * 180.02562 * 15 14 13 18 18 N 1.31514 * 120.00314 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99457 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47224 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.46850 * 120.00014 * 19 17 15 22 22 H 1.48494 * 109.46864 * 239.99886 * 19 17 15 23 23 H 1.08994 * 109.47533 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47130 * 300.00297 * 1 2 3 25 25 H 1.09004 * 109.46966 * 60.00426 * 1 2 3 26 26 H 1.08002 * 122.53745 * 0.02562 * 5 4 2 27 27 H 1.07999 * 122.53709 * 180.02562 * 6 5 4 28 28 H 1.08004 * 125.20222 * 180.26315 * 7 6 5 29 29 H 1.08997 * 109.47709 * 95.29580 * 10 9 2 30 30 H 1.08998 * 109.47039 * 215.29719 * 10 9 2 31 31 H 1.09003 * 109.47162 * 335.29341 * 10 9 2 32 32 H 1.08998 * 109.47207 * 300.00366 * 13 11 9 33 33 H 1.09005 * 109.46885 * 59.99874 * 13 11 9 34 34 H 1.08998 * 109.47369 * 300.00445 * 14 13 11 35 35 H 1.09003 * 109.46698 * 60.00558 * 14 13 11 36 36 H 0.96998 * 119.99591 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 2.5640 -0.1148 2.2990 6 6 2.9560 -0.9741 3.3110 7 6 2.7430 -2.2675 3.0641 8 16 2.0076 -2.4517 1.4770 9 7 2.0183 -0.6907 -1.1961 10 6 1.5465 -2.0428 -1.5051 11 6 2.9015 -0.0822 -2.0123 12 8 3.2924 1.0369 -1.7562 13 6 3.4043 -0.7929 -3.2424 14 6 4.3876 0.1116 -3.9879 15 6 4.8909 -0.5994 -5.2177 16 1 4.5436 -1.5964 -5.4450 17 6 5.7945 0.0232 -6.0526 18 7 6.2177 1.2371 -5.7754 19 14 6.4177 -0.8579 -7.5773 20 1 5.7925 -2.2021 -7.6626 21 1 6.0620 -0.0696 -8.7845 22 1 7.8935 -1.0019 -7.4973 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 2.6800 0.9566 2.3692 27 1 3.4006 -0.6237 4.2308 28 1 2.9810 -3.0774 3.7378 29 1 0.7108 -1.9856 -2.2025 30 1 2.3568 -2.6162 -1.9553 31 1 1.2210 -2.5326 -0.5874 32 1 3.9078 -1.7142 -2.9495 33 1 2.5634 -1.0299 -3.8943 34 1 3.8837 1.0327 -4.2808 35 1 5.2286 0.3489 -3.3362 36 1 6.8536 1.6748 -6.3626 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292587854.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:23:48 Heat of formation + Delta-G solvation = -10.221481 kcal Electronic energy + Delta-G solvation = -17911.726308 eV Core-core repulsion = 15101.499169 eV Total energy + Delta-G solvation = -2810.227140 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.71513 -37.87023 -35.84945 -33.52085 -32.19893 -30.57146 -28.58814 -26.89292 -25.81996 -24.30430 -22.54076 -20.94737 -19.43553 -18.68181 -17.21292 -16.94477 -15.98260 -15.64209 -15.38398 -15.03022 -14.41546 -13.77685 -13.51846 -13.17280 -13.10520 -12.87797 -12.54462 -12.49161 -12.19754 -12.12819 -12.07355 -11.78183 -11.20482 -11.10343 -10.93849 -10.66388 -10.55831 -9.94575 -9.62026 -9.17943 -9.02746 -8.70899 -8.55526 -8.51860 -8.31156 -5.95071 -3.99346 0.91787 1.54931 1.93141 2.65760 3.19448 3.28283 3.33356 3.40631 3.43939 4.47862 4.54500 4.93644 5.01813 5.10577 5.17222 5.37646 5.40000 5.40740 5.49240 5.49839 5.58633 5.73926 5.87288 5.95530 6.06951 6.22384 6.23168 6.25383 6.38659 6.70326 6.89052 7.67478 7.75889 7.87318 8.08182 8.39301 8.70801 9.09175 9.64214 11.15965 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.031119 B = 0.004044 C = 0.004011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.548636 B = 6921.862073 C = 6979.921312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.203 3.797 3 H 0.117 0.883 4 C -0.177 4.177 5 C -0.134 4.134 6 C -0.133 4.133 7 C -0.229 4.229 8 S 0.106 5.894 9 N -0.624 5.624 10 C 0.082 3.918 11 C 0.515 3.485 12 O -0.530 6.530 13 C -0.127 4.127 14 C 0.036 3.964 15 C -0.526 4.526 16 H 0.056 0.944 17 C 0.058 3.942 18 N -0.890 5.890 19 Si 0.892 3.108 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.284 1.284 23 H 0.059 0.941 24 H 0.069 0.931 25 H 0.068 0.932 26 H 0.140 0.860 27 H 0.137 0.863 28 H 0.160 0.840 29 H 0.060 0.940 30 H 0.079 0.921 31 H 0.062 0.938 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.023 0.977 35 H 0.023 0.977 36 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.359 -7.948 16.610 22.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.097 3.903 3 H 0.135 0.865 4 C -0.296 4.296 5 C -0.164 4.164 6 C -0.163 4.163 7 C -0.364 4.364 8 S 0.369 5.631 9 N -0.360 5.360 10 C -0.062 4.062 11 C 0.305 3.695 12 O -0.405 6.405 13 C -0.167 4.167 14 C -0.001 4.001 15 C -0.564 4.564 16 H 0.074 0.926 17 C -0.144 4.144 18 N -0.528 5.528 19 Si 0.720 3.280 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.210 1.210 23 H 0.078 0.922 24 H 0.088 0.912 25 H 0.087 0.913 26 H 0.158 0.842 27 H 0.155 0.845 28 H 0.177 0.823 29 H 0.079 0.921 30 H 0.098 0.902 31 H 0.080 0.920 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.042 0.958 35 H 0.042 0.958 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -12.494 -8.440 15.830 21.862 hybrid contribution 0.927 0.592 0.184 1.115 sum -11.567 -7.848 16.014 21.256 Atomic orbital electron populations 1.22147 0.93704 1.02595 1.02883 1.19427 0.93849 0.97096 0.79936 0.86533 1.25028 1.07520 0.96303 1.00704 1.20137 1.01348 1.01461 0.93463 1.20136 1.03121 0.92405 1.00662 1.25840 1.08817 1.00576 1.01185 1.84159 1.61177 1.05198 1.12588 1.48182 1.46182 1.16935 1.24730 1.21795 1.00773 0.83314 1.00274 1.21645 0.76737 0.86507 0.84585 1.90653 1.56537 1.19579 1.73742 1.21894 1.01350 1.00769 0.92644 1.18920 0.93115 0.94098 0.94000 1.21251 1.25529 1.01547 1.08072 0.92553 1.25023 0.96420 0.94893 0.98028 1.70010 1.32039 1.12958 1.37825 0.86542 0.78636 0.79732 0.83100 1.19739 1.21023 1.21025 0.92194 0.91237 0.91308 0.84229 0.84545 0.82277 0.92106 0.90191 0.91965 0.90185 0.90170 0.95819 0.95849 0.93020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.07 37.16 0.34 -1.27 16 2 C 0.20 2.73 3.06 -69.08 -0.21 2.52 16 3 H 0.12 1.80 6.89 -51.93 -0.36 1.44 16 4 C -0.18 -2.24 5.41 -36.00 -0.19 -2.44 16 5 C -0.13 -1.61 10.03 -41.21 -0.41 -2.03 16 6 C -0.13 -1.42 10.18 -41.21 -0.42 -1.84 16 7 C -0.23 -2.36 11.23 29.04 0.33 -2.03 16 8 S 0.11 1.16 19.87 -107.50 -2.14 -0.98 16 9 N -0.62 -9.42 2.75 -175.27 -0.48 -9.91 16 10 C 0.08 0.95 8.63 59.84 0.52 1.47 16 11 C 0.51 10.21 7.67 -10.99 -0.08 10.13 16 12 O -0.53 -12.64 15.32 5.56 0.09 -12.56 16 13 C -0.13 -2.62 4.26 -27.88 -0.12 -2.74 16 14 C 0.04 0.98 4.26 -27.88 -0.12 0.87 16 15 C -0.53 -14.98 9.11 -34.44 -0.31 -15.30 16 16 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 17 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 18 N -0.89 -27.57 13.29 55.43 0.74 -26.84 16 19 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 20 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 21 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 23 H 0.06 0.56 7.32 -51.93 -0.38 0.18 16 24 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 25 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.14 1.54 8.06 -52.49 -0.42 1.12 16 27 H 0.14 1.16 8.06 -52.49 -0.42 0.74 16 28 H 0.16 1.25 8.06 -52.48 -0.42 0.83 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.08 0.92 6.66 -51.93 -0.35 0.57 16 31 H 0.06 0.63 4.54 -37.32 -0.17 0.46 16 32 H 0.08 1.53 7.41 -51.93 -0.38 1.14 16 33 H 0.08 1.51 8.11 -51.93 -0.42 1.09 16 34 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 35 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 36 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 312.24 15.07 4.71 4.71 Total: -1.00 -33.84 312.24 -7.88 -41.72 By element: Atomic # 1 Polarization: 3.20 SS G_CDS: -4.98 Total: -1.78 kcal Atomic # 6 Polarization: -10.28 SS G_CDS: -0.79 Total: -11.07 kcal Atomic # 7 Polarization: -37.00 SS G_CDS: 0.25 Total: -36.74 kcal Atomic # 8 Polarization: -12.64 SS G_CDS: 0.09 Total: -12.56 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Atomic # 16 Polarization: 1.16 SS G_CDS: -2.14 Total: -0.98 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -33.84 -7.88 -41.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292587854.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.498 kcal (2) G-P(sol) polarization free energy of solvation -33.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds