Wall clock time and date at job start Mon Mar 30 2020 00:23:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08992 * 109.47062 * 2 1 4 4 C 1.50704 * 109.46719 * 119.99948 * 2 1 3 5 5 C 1.33388 * 125.20126 * 254.44828 * 4 2 1 6 6 C 1.38419 * 114.92030 * 180.02562 * 5 4 2 7 7 C 1.33386 * 114.92056 * 0.02562 * 6 5 4 8 8 S 1.75879 * 125.20267 * 74.47787 * 4 2 1 9 9 N 1.46498 * 109.46853 * 239.99534 * 2 1 3 10 10 C 1.46496 * 120.00209 * 306.76389 * 9 2 1 11 11 C 1.34774 * 119.99820 * 126.76281 * 9 2 1 12 12 O 1.21279 * 120.00018 * 0.02562 * 11 9 2 13 13 C 1.50702 * 120.00258 * 179.97438 * 11 9 2 14 14 C 1.52998 * 109.47431 * 179.97438 * 13 11 9 15 15 C 1.50706 * 109.47111 * 179.97438 * 14 13 11 16 16 H 1.07995 * 119.99649 * 0.02562 * 15 14 13 17 17 C 1.37879 * 119.99533 * 180.02562 * 15 14 13 18 18 N 1.31514 * 120.00314 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99457 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47224 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.46850 * 120.00014 * 19 17 15 22 22 H 1.48494 * 109.46864 * 239.99886 * 19 17 15 23 23 H 1.08994 * 109.47533 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47130 * 300.00297 * 1 2 3 25 25 H 1.09004 * 109.46966 * 60.00426 * 1 2 3 26 26 H 1.08002 * 122.53745 * 0.02562 * 5 4 2 27 27 H 1.07999 * 122.53709 * 180.02562 * 6 5 4 28 28 H 1.08004 * 125.20222 * 180.26315 * 7 6 5 29 29 H 1.08997 * 109.47709 * 95.29580 * 10 9 2 30 30 H 1.08998 * 109.47039 * 215.29719 * 10 9 2 31 31 H 1.09003 * 109.47162 * 335.29341 * 10 9 2 32 32 H 1.08998 * 109.47207 * 300.00366 * 13 11 9 33 33 H 1.09005 * 109.46885 * 59.99874 * 13 11 9 34 34 H 1.08998 * 109.47369 * 300.00445 * 14 13 11 35 35 H 1.09003 * 109.46698 * 60.00558 * 14 13 11 36 36 H 0.96998 * 119.99591 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 2.5640 -0.1148 2.2990 6 6 2.9560 -0.9741 3.3110 7 6 2.7430 -2.2675 3.0641 8 16 2.0076 -2.4517 1.4770 9 7 2.0183 -0.6907 -1.1961 10 6 1.5465 -2.0428 -1.5051 11 6 2.9015 -0.0822 -2.0123 12 8 3.2924 1.0369 -1.7562 13 6 3.4043 -0.7929 -3.2424 14 6 4.3876 0.1116 -3.9879 15 6 4.8909 -0.5994 -5.2177 16 1 4.5436 -1.5964 -5.4450 17 6 5.7945 0.0232 -6.0526 18 7 6.2177 1.2371 -5.7754 19 14 6.4177 -0.8579 -7.5773 20 1 5.7925 -2.2021 -7.6626 21 1 6.0620 -0.0696 -8.7845 22 1 7.8935 -1.0019 -7.4973 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 2.6800 0.9566 2.3692 27 1 3.4006 -0.6237 4.2308 28 1 2.9810 -3.0774 3.7378 29 1 0.7108 -1.9856 -2.2025 30 1 2.3568 -2.6162 -1.9553 31 1 1.2210 -2.5326 -0.5874 32 1 3.9078 -1.7142 -2.9495 33 1 2.5634 -1.0299 -3.8943 34 1 3.8837 1.0327 -4.2808 35 1 5.2286 0.3489 -3.3362 36 1 6.8536 1.6748 -6.3626 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292587854.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:23:47 Heat of formation + Delta-G solvation = -31.201810 kcal Electronic energy + Delta-G solvation = -17912.636084 eV Core-core repulsion = 15101.499169 eV Total energy + Delta-G solvation = -2811.136915 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.11642 -38.87585 -37.11197 -35.60239 -33.63144 -32.29764 -29.46261 -28.03122 -27.70292 -25.32751 -24.08844 -22.41425 -20.36928 -20.09131 -18.80120 -18.22981 -17.60592 -16.89729 -16.59947 -16.39416 -16.28311 -14.90397 -14.82653 -14.54568 -14.24729 -14.00028 -13.88352 -13.73515 -13.45708 -13.35276 -13.13822 -13.00359 -12.86017 -12.74679 -12.42878 -12.15398 -11.93211 -11.65685 -11.49457 -11.27854 -10.71240 -10.57440 -9.79839 -9.62375 -9.36742 -8.17644 -6.31783 0.03085 0.67501 1.06129 1.42810 1.44312 1.57623 1.63121 1.76003 2.08783 2.43794 3.15607 3.55135 3.81826 4.09831 4.18379 4.23260 4.28533 4.45311 4.46622 4.56777 4.64865 4.66735 4.74250 4.81716 4.92016 5.06197 5.11610 5.19718 5.37454 5.46614 5.50835 5.60983 5.62272 5.85014 6.17457 6.30524 6.86572 7.20660 7.38658 8.95403 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.031119 B = 0.004044 C = 0.004011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.548636 B = 6921.862073 C = 6979.921312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.199 3.801 3 H 0.086 0.914 4 C -0.204 4.204 5 C -0.143 4.143 6 C -0.146 4.146 7 C -0.224 4.224 8 S 0.123 5.877 9 N -0.612 5.612 10 C 0.071 3.929 11 C 0.512 3.488 12 O -0.586 6.586 13 C -0.114 4.114 14 C 0.043 3.957 15 C -0.541 4.541 16 H 0.077 0.923 17 C -0.007 4.007 18 N -0.938 5.938 19 Si 0.974 3.026 20 H -0.251 1.251 21 H -0.280 1.280 22 H -0.281 1.281 23 H 0.076 0.924 24 H 0.083 0.917 25 H 0.064 0.936 26 H 0.138 0.862 27 H 0.157 0.843 28 H 0.187 0.813 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.102 0.898 33 H 0.106 0.894 34 H -0.018 1.018 35 H -0.021 1.021 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.486 -11.073 16.843 24.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.094 3.906 3 H 0.104 0.896 4 C -0.322 4.322 5 C -0.174 4.174 6 C -0.176 4.176 7 C -0.359 4.359 8 S 0.387 5.613 9 N -0.345 5.345 10 C -0.071 4.071 11 C 0.303 3.697 12 O -0.466 6.466 13 C -0.154 4.154 14 C 0.005 3.995 15 C -0.579 4.579 16 H 0.095 0.905 17 C -0.204 4.204 18 N -0.579 5.579 19 Si 0.798 3.202 20 H -0.175 1.175 21 H -0.206 1.206 22 H -0.207 1.207 23 H 0.095 0.905 24 H 0.102 0.898 25 H 0.083 0.917 26 H 0.156 0.844 27 H 0.175 0.825 28 H 0.204 0.796 29 H 0.102 0.898 30 H 0.104 0.896 31 H 0.099 0.901 32 H 0.120 0.880 33 H 0.124 0.876 34 H 0.001 0.999 35 H -0.002 1.002 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -13.675 -11.624 16.091 24.105 hybrid contribution 1.255 1.556 0.226 2.011 sum -12.420 -10.069 16.317 22.845 Atomic orbital electron populations 1.22089 0.91037 1.03838 1.03421 1.19500 0.95800 0.95603 0.79697 0.89592 1.24965 1.08904 0.97825 1.00489 1.20377 1.01089 1.01943 0.94001 1.20351 1.03532 0.92493 1.01177 1.26229 1.07504 1.01169 1.00994 1.83938 1.61076 1.03161 1.13165 1.48111 1.44279 1.17998 1.24113 1.22124 1.01757 0.81212 1.01983 1.21444 0.77418 0.85846 0.85016 1.90634 1.58933 1.21907 1.75089 1.21650 1.00795 0.99860 0.93067 1.18698 0.92861 0.93924 0.94023 1.21729 1.25493 1.02368 1.08279 0.90489 1.26141 0.96639 0.95606 1.02024 1.70191 1.32951 1.15138 1.39580 0.85265 0.77880 0.79100 0.77949 1.17472 1.20615 1.20700 0.90472 0.89810 0.91707 0.84399 0.82539 0.79601 0.89787 0.89644 0.90087 0.87999 0.87624 0.99923 1.00219 0.92881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.82 9.07 71.98 0.65 -2.17 16 2 C 0.20 5.35 3.06 44.25 0.14 5.49 16 3 H 0.09 2.83 6.89 -2.39 -0.02 2.82 16 4 C -0.20 -4.99 5.41 24.59 0.13 -4.85 16 5 C -0.14 -3.39 10.03 21.21 0.21 -3.18 16 6 C -0.15 -2.87 10.18 21.21 0.22 -2.65 16 7 C -0.22 -4.00 11.23 66.72 0.75 -3.25 16 8 S 0.12 2.40 19.87 -56.49 -1.12 1.27 16 9 N -0.61 -18.06 2.75 -826.81 -2.28 -20.33 16 10 C 0.07 1.46 8.63 127.77 1.10 2.56 16 11 C 0.51 20.80 7.67 87.66 0.67 21.47 16 12 O -0.59 -29.76 15.32 -3.03 -0.05 -29.81 16 13 C -0.11 -4.71 4.26 29.85 0.13 -4.59 16 14 C 0.04 2.42 4.26 29.85 0.13 2.54 16 15 C -0.54 -31.00 9.11 25.60 0.23 -30.77 16 16 H 0.08 4.00 7.74 -2.91 -0.02 3.98 16 17 C -0.01 -0.40 5.46 84.66 0.46 0.06 16 18 N -0.94 -60.10 13.29 21.45 0.28 -59.81 16 19 Si 0.97 44.46 29.54 68.60 2.03 46.48 16 20 H -0.25 -10.52 7.11 99.48 0.71 -9.81 16 21 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 22 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 23 H 0.08 1.23 7.32 -2.39 -0.02 1.21 16 24 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 25 H 0.06 1.31 8.14 -2.38 -0.02 1.29 16 26 H 0.14 3.17 8.06 -2.91 -0.02 3.14 16 27 H 0.16 2.35 8.06 -2.91 -0.02 2.33 16 28 H 0.19 2.24 8.06 -2.91 -0.02 2.21 16 29 H 0.08 1.39 8.14 -2.39 -0.02 1.38 16 30 H 0.08 1.69 6.66 -2.39 -0.02 1.68 16 31 H 0.08 1.37 4.54 -11.67 -0.05 1.32 16 32 H 0.10 3.74 7.41 -2.39 -0.02 3.72 16 33 H 0.11 3.80 8.11 -2.38 -0.02 3.78 16 34 H -0.02 -1.13 8.10 -2.39 -0.02 -1.15 16 35 H -0.02 -1.33 8.10 -2.39 -0.02 -1.35 16 36 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 Total: -1.00 -77.15 312.24 4.71 -72.44 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: 1.02 Total: 9.09 kcal Atomic # 6 Polarization: -24.15 SS G_CDS: 4.82 Total: -19.32 kcal Atomic # 7 Polarization: -78.15 SS G_CDS: -1.99 Total: -80.15 kcal Atomic # 8 Polarization: -29.76 SS G_CDS: -0.05 Total: -29.81 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.48 kcal Atomic # 16 Polarization: 2.40 SS G_CDS: -1.12 Total: 1.27 kcal Total: -77.15 4.71 -72.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292587854.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.236 kcal (2) G-P(sol) polarization free energy of solvation -77.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds