Wall clock time and date at job start Mon Mar 30 2020 00:23:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47374 * 2 1 4 4 C 1.50703 * 109.47022 * 239.99765 * 2 1 3 5 5 C 1.33387 * 125.20111 * 106.66497 * 4 2 1 6 6 C 1.38425 * 114.92140 * 179.97438 * 5 4 2 7 7 C 1.33385 * 114.92050 * 0.02562 * 6 5 4 8 8 S 1.75879 * 125.20578 * 286.36053 * 4 2 1 9 9 N 1.46500 * 109.46753 * 120.00333 * 2 1 3 10 10 C 1.46502 * 120.00584 * 53.30694 * 9 2 1 11 11 C 1.34786 * 119.99760 * 233.30401 * 9 2 1 12 12 O 1.21286 * 119.99506 * 0.02562 * 11 9 2 13 13 C 1.50695 * 120.00120 * 180.02562 * 11 9 2 14 14 C 1.53001 * 109.47190 * 180.02562 * 13 11 9 15 15 C 1.50695 * 109.47190 * 180.02562 * 14 13 11 16 16 H 1.08003 * 120.00036 * 359.97438 * 15 14 13 17 17 C 1.37876 * 120.00238 * 180.02562 * 15 14 13 18 18 N 1.31510 * 119.99701 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00375 * 180.02562 * 17 15 14 20 20 H 1.48509 * 109.46979 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47343 * 119.99608 * 19 17 15 22 22 H 1.48499 * 109.46974 * 240.00241 * 19 17 15 23 23 H 1.09004 * 109.47331 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47437 * 299.99938 * 1 2 3 25 25 H 1.09003 * 109.47376 * 59.99955 * 1 2 3 26 26 H 1.08003 * 122.53753 * 0.02562 * 5 4 2 27 27 H 1.08007 * 122.53722 * 180.02562 * 6 5 4 28 28 H 1.08000 * 125.20015 * 179.97438 * 7 6 5 29 29 H 1.09003 * 109.46669 * 264.54565 * 10 9 2 30 30 H 1.09002 * 109.46645 * 24.53941 * 10 9 2 31 31 H 1.09001 * 109.47144 * 144.54137 * 10 9 2 32 32 H 1.08999 * 109.47165 * 300.00244 * 13 11 9 33 33 H 1.09003 * 109.47194 * 59.99770 * 13 11 9 34 34 H 1.09000 * 109.46753 * 299.99982 * 14 13 11 35 35 H 1.08996 * 109.46907 * 59.99713 * 14 13 11 36 36 H 0.96997 * 120.00182 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 6 2.5833 -0.1166 -2.2902 6 6 2.9710 -0.9755 -3.3041 7 6 2.7344 -2.2668 -3.0680 8 16 1.9887 -2.4501 -1.4857 9 7 2.0183 -0.6907 1.1962 10 6 1.5477 -2.0434 1.5044 11 6 2.9005 -0.0816 2.0131 12 8 3.2897 1.0384 1.7581 13 6 3.4032 -0.7922 3.2432 14 6 4.3853 0.1130 3.9896 15 6 4.8885 -0.5979 5.2193 16 1 4.5422 -1.5954 5.4462 17 6 5.7903 0.0255 6.0555 18 7 6.2116 1.2403 5.7796 19 14 6.4146 -0.8559 7.5795 20 1 5.7923 -2.2018 7.6628 21 1 7.8908 -0.9967 7.5002 22 1 6.0564 -0.0699 8.7875 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 2.7176 0.9532 -2.3520 27 1 3.4303 -0.6265 -4.2172 28 1 2.9689 -3.0763 -3.7434 29 1 0.7133 -1.9872 2.2036 30 1 1.2205 -2.5322 0.5867 31 1 2.3591 -2.6171 1.9523 32 1 2.5622 -1.0303 3.8945 33 1 3.9078 -1.7130 2.9502 34 1 5.2263 0.3514 3.3384 35 1 3.8803 1.0334 4.2825 36 1 6.8458 1.6791 6.3680 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292587857.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:23:50 Heat of formation + Delta-G solvation = -31.231012 kcal Electronic energy + Delta-G solvation = -17912.390519 eV Core-core repulsion = 15101.252337 eV Total energy + Delta-G solvation = -2811.138182 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.11476 -38.87526 -37.11018 -35.60321 -33.63197 -32.29775 -29.46627 -28.03017 -27.70210 -25.32521 -24.08918 -22.41391 -20.36979 -20.09274 -18.80129 -18.22790 -17.60579 -16.89626 -16.60250 -16.39591 -16.28447 -14.90453 -14.82737 -14.54354 -14.24780 -13.99203 -13.88315 -13.73633 -13.46016 -13.35566 -13.13916 -13.00218 -12.86018 -12.74488 -12.42874 -12.15450 -11.93244 -11.65798 -11.49576 -11.27866 -10.71390 -10.57469 -9.79813 -9.62560 -9.36666 -8.17648 -6.31792 0.02879 0.67425 1.05936 1.42792 1.44304 1.57583 1.63058 1.75763 2.09092 2.43791 3.15606 3.55023 3.81844 4.09690 4.18411 4.23202 4.28492 4.45311 4.46566 4.56782 4.64881 4.66687 4.74173 4.81661 4.91973 5.06160 5.11528 5.19751 5.37426 5.46593 5.50800 5.60875 5.62220 5.85008 6.17467 6.30510 6.86565 7.20626 7.38645 8.95419 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.031127 B = 0.004041 C = 0.004009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.327207 B = 6926.536599 C = 6981.922659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.199 3.801 3 H 0.086 0.914 4 C -0.204 4.204 5 C -0.143 4.143 6 C -0.146 4.146 7 C -0.224 4.224 8 S 0.124 5.876 9 N -0.612 5.612 10 C 0.071 3.929 11 C 0.512 3.488 12 O -0.586 6.586 13 C -0.114 4.114 14 C 0.043 3.957 15 C -0.541 4.541 16 H 0.077 0.923 17 C -0.007 4.007 18 N -0.938 5.938 19 Si 0.974 3.026 20 H -0.251 1.251 21 H -0.281 1.281 22 H -0.280 1.280 23 H 0.076 0.924 24 H 0.064 0.936 25 H 0.083 0.917 26 H 0.138 0.862 27 H 0.157 0.843 28 H 0.187 0.813 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.106 0.894 33 H 0.102 0.898 34 H -0.021 1.021 35 H -0.018 1.018 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.457 -11.096 -16.857 24.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.094 3.906 3 H 0.104 0.896 4 C -0.322 4.322 5 C -0.174 4.174 6 C -0.176 4.176 7 C -0.359 4.359 8 S 0.387 5.613 9 N -0.345 5.345 10 C -0.071 4.071 11 C 0.303 3.697 12 O -0.466 6.466 13 C -0.154 4.154 14 C 0.005 3.995 15 C -0.579 4.579 16 H 0.095 0.905 17 C -0.204 4.204 18 N -0.579 5.579 19 Si 0.798 3.202 20 H -0.175 1.175 21 H -0.207 1.207 22 H -0.206 1.206 23 H 0.095 0.905 24 H 0.083 0.917 25 H 0.102 0.898 26 H 0.156 0.844 27 H 0.175 0.825 28 H 0.204 0.796 29 H 0.102 0.898 30 H 0.099 0.901 31 H 0.103 0.897 32 H 0.124 0.876 33 H 0.120 0.880 34 H -0.002 1.002 35 H 0.001 0.999 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -13.665 -11.646 -16.114 24.125 hybrid contribution 1.275 1.558 -0.216 2.025 sum -12.390 -10.088 -16.329 22.846 Atomic orbital electron populations 1.22092 0.91049 1.03837 1.03419 1.19501 0.95800 0.95604 0.79697 0.89595 1.24960 1.08796 0.97864 1.00564 1.20380 1.00939 1.01951 0.94138 1.20353 1.03522 0.92539 1.01157 1.26227 1.07401 1.01176 1.01047 1.83928 1.60847 1.03259 1.13264 1.48118 1.44342 1.17955 1.24087 1.22127 1.01759 0.81196 1.01987 1.21448 0.77408 0.85858 0.85012 1.90635 1.58960 1.21850 1.75120 1.21649 1.00802 0.99859 0.93061 1.18695 0.92864 0.93922 0.94019 1.21728 1.25579 1.02318 1.08245 0.90494 1.26139 0.96635 0.95606 1.02028 1.70188 1.33078 1.15065 1.39530 0.85266 0.77878 0.79105 0.77947 1.17473 1.20701 1.20610 0.90467 0.91711 0.89813 0.84447 0.82547 0.79587 0.89795 0.90087 0.89653 0.87624 0.88000 1.00218 0.99923 0.92879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.83 9.07 71.98 0.65 -2.18 16 2 C 0.20 5.36 3.06 44.25 0.14 5.49 16 3 H 0.09 2.83 6.89 -2.39 -0.02 2.82 16 4 C -0.20 -4.99 5.40 24.59 0.13 -4.85 16 5 C -0.14 -3.40 10.03 21.22 0.21 -3.19 16 6 C -0.15 -2.87 10.18 21.22 0.22 -2.66 16 7 C -0.22 -3.98 11.23 66.72 0.75 -3.23 16 8 S 0.12 2.39 19.89 -56.49 -1.12 1.27 16 9 N -0.61 -18.07 2.75 -826.76 -2.28 -20.34 16 10 C 0.07 1.46 8.65 127.77 1.10 2.56 16 11 C 0.51 20.80 7.67 87.65 0.67 21.48 16 12 O -0.59 -29.76 15.32 -3.05 -0.05 -29.81 16 13 C -0.11 -4.71 4.26 29.85 0.13 -4.58 16 14 C 0.04 2.42 4.26 29.85 0.13 2.55 16 15 C -0.54 -31.00 9.11 25.60 0.23 -30.77 16 16 H 0.08 4.00 7.74 -2.91 -0.02 3.98 16 17 C -0.01 -0.40 5.46 84.65 0.46 0.06 16 18 N -0.94 -60.09 13.29 21.45 0.28 -59.81 16 19 Si 0.97 44.45 29.54 68.60 2.03 46.48 16 20 H -0.25 -10.52 7.11 99.48 0.71 -9.81 16 21 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 22 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 23 H 0.08 1.23 7.32 -2.38 -0.02 1.21 16 24 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 25 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.14 3.18 8.06 -2.91 -0.02 3.16 16 27 H 0.16 2.36 8.06 -2.91 -0.02 2.33 16 28 H 0.19 2.23 8.06 -2.91 -0.02 2.21 16 29 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.08 1.37 4.52 -11.62 -0.05 1.32 16 31 H 0.08 1.69 6.67 -2.39 -0.02 1.67 16 32 H 0.11 3.80 8.11 -2.39 -0.02 3.78 16 33 H 0.10 3.74 7.41 -2.39 -0.02 3.72 16 34 H -0.02 -1.33 8.10 -2.39 -0.02 -1.35 16 35 H -0.02 -1.13 8.10 -2.39 -0.02 -1.15 16 36 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 Total: -1.00 -77.13 312.26 4.71 -72.42 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: 1.02 Total: 9.10 kcal Atomic # 6 Polarization: -24.14 SS G_CDS: 4.83 Total: -19.32 kcal Atomic # 7 Polarization: -78.16 SS G_CDS: -1.99 Total: -80.15 kcal Atomic # 8 Polarization: -29.76 SS G_CDS: -0.05 Total: -29.81 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Atomic # 16 Polarization: 2.39 SS G_CDS: -1.12 Total: 1.27 kcal Total: -77.13 4.71 -72.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292587857.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.190 kcal (2) G-P(sol) polarization free energy of solvation -77.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds