Wall clock time and date at job start Mon Mar 30 2020 00:26:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.46949 * 2 1 4 4 C 1.52995 * 109.47086 * 120.00137 * 2 1 3 5 5 C 1.50702 * 109.47096 * 184.99906 * 4 2 1 6 6 C 1.33381 * 125.20592 * 89.99839 * 5 4 2 7 7 C 1.38427 * 114.92374 * 179.97438 * 6 5 4 8 8 C 1.33387 * 114.91991 * 0.25034 * 7 6 5 9 9 S 1.75886 * 109.59194 * 359.63459 * 8 7 6 10 10 N 1.46502 * 109.46870 * 240.00108 * 2 1 3 11 11 C 1.34781 * 119.99672 * 84.99923 * 10 2 1 12 12 O 1.21278 * 120.00178 * 359.97438 * 11 10 2 13 13 C 1.50705 * 119.99654 * 179.97438 * 11 10 2 14 14 C 1.52998 * 109.47011 * 179.97438 * 13 11 10 15 15 C 1.50705 * 109.47011 * 179.97438 * 14 13 11 16 16 H 1.07998 * 119.99741 * 0.02562 * 15 14 13 17 17 C 1.37879 * 119.99790 * 180.02562 * 15 14 13 18 18 N 1.31515 * 119.99807 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99759 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47218 * 59.99675 * 19 17 15 21 21 H 1.48494 * 109.46917 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.46931 * 299.99516 * 19 17 15 23 23 H 1.08997 * 109.46860 * 300.00022 * 1 2 3 24 24 H 1.08999 * 109.47292 * 59.99452 * 1 2 3 25 25 H 1.08994 * 109.47427 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.46856 * 64.99851 * 4 2 1 27 27 H 1.08996 * 109.47050 * 304.99994 * 4 2 1 28 28 H 1.08002 * 122.53744 * 359.94345 * 6 5 4 29 29 H 1.08002 * 122.53759 * 179.97438 * 7 6 5 30 30 H 1.08002 * 125.20431 * 179.75072 * 8 7 6 31 31 H 0.96995 * 120.00309 * 265.00438 * 10 2 1 32 32 H 1.08997 * 109.47012 * 300.00159 * 13 11 10 33 33 H 1.09006 * 109.47078 * 60.00165 * 13 11 10 34 34 H 1.08997 * 109.47369 * 299.99948 * 14 13 11 35 35 H 1.09006 * 109.47059 * 60.00161 * 14 13 11 36 36 H 0.97006 * 119.99270 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5419 -0.6149 1.3127 6 6 4.2188 0.3637 1.9153 7 6 5.5965 0.2499 1.8439 8 6 6.0385 -0.8184 1.1787 9 16 4.6705 -1.7628 0.6039 10 7 2.0183 -0.6906 -1.1962 11 6 2.1470 -0.0182 -2.3572 12 8 1.8581 1.1585 -2.4117 13 6 2.6498 -0.7284 -3.5876 14 6 2.7005 0.2545 -4.7589 15 6 3.2039 -0.4556 -5.9892 16 1 3.4615 -1.5033 -5.9405 17 6 3.3357 0.2323 -7.1768 18 7 3.0215 1.5080 -7.2361 19 14 3.9590 -0.6481 -8.7019 20 1 3.0432 -1.7684 -9.0358 21 1 4.0083 0.3060 -9.8387 22 1 5.3205 -1.1818 -8.4435 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 1.7516 -1.7715 1.2055 27 1 1.6054 -0.2618 2.1369 28 1 3.7290 1.1832 2.4203 29 1 6.2630 0.9739 2.2890 30 1 7.0774 -1.0667 1.0191 31 1 2.2489 -1.6317 -1.1528 32 1 3.6491 -1.1202 -3.3980 33 1 1.9776 -1.5508 -3.8326 34 1 1.7010 0.6459 -4.9484 35 1 3.3725 1.0771 -4.5141 36 1 3.1146 1.9920 -8.0716 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292631919.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:26:20 Heat of formation + Delta-G solvation = -27.162979 kcal Electronic energy + Delta-G solvation = -17668.799632 eV Core-core repulsion = 14857.837854 eV Total energy + Delta-G solvation = -2810.961778 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.39805 -37.98517 -35.81847 -33.39640 -32.00041 -30.84107 -29.72811 -26.50640 -25.65354 -23.36621 -22.18244 -20.77799 -19.71067 -19.18563 -17.33590 -16.76465 -15.99406 -15.61407 -15.49106 -14.76120 -14.41469 -13.80141 -13.67550 -13.30597 -13.08837 -12.73009 -12.70805 -12.36776 -12.14753 -11.96711 -11.69709 -11.58783 -11.11298 -11.02580 -10.87608 -10.79384 -10.58887 -9.90198 -9.61392 -9.13189 -8.95851 -8.85172 -8.63311 -8.47964 -8.28176 -5.92587 -3.96768 0.92786 1.56877 1.93169 2.67548 3.33927 3.36650 3.40967 3.42653 3.59984 4.50243 4.55155 4.79075 4.93148 5.01028 5.29753 5.39358 5.42207 5.48572 5.50611 5.57332 5.63395 5.73584 5.99198 6.11909 6.19161 6.26173 6.29833 6.31752 6.40761 6.83434 6.95237 7.78001 7.91270 7.95630 8.11457 8.43084 8.86496 9.11912 9.66429 11.18376 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.021667 B = 0.004421 C = 0.003960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.979073 B = 6332.155938 C = 7069.269470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.145 3.855 3 H 0.089 0.911 4 C -0.056 4.056 5 C -0.169 4.169 6 C -0.142 4.142 7 C -0.134 4.134 8 C -0.216 4.216 9 S 0.102 5.898 10 N -0.738 5.738 11 C 0.513 3.487 12 O -0.535 6.535 13 C -0.131 4.131 14 C 0.038 3.962 15 C -0.527 4.527 16 H 0.055 0.945 17 C 0.058 3.942 18 N -0.890 5.890 19 Si 0.892 3.108 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 H 0.061 0.939 24 H 0.066 0.934 25 H 0.055 0.945 26 H 0.079 0.921 27 H 0.095 0.905 28 H 0.138 0.862 29 H 0.137 0.863 30 H 0.162 0.838 31 H 0.393 0.607 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.023 0.977 35 H 0.023 0.977 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.735 -7.183 21.228 22.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.039 3.961 3 H 0.107 0.893 4 C -0.096 4.096 5 C -0.286 4.286 6 C -0.172 4.172 7 C -0.164 4.164 8 C -0.352 4.352 9 S 0.365 5.635 10 N -0.392 5.392 11 C 0.301 3.699 12 O -0.410 6.410 13 C -0.171 4.171 14 C 0.001 3.999 15 C -0.565 4.565 16 H 0.073 0.927 17 C -0.143 4.143 18 N -0.529 5.529 19 Si 0.720 3.280 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.203 1.203 23 H 0.080 0.920 24 H 0.085 0.915 25 H 0.075 0.925 26 H 0.097 0.903 27 H 0.113 0.887 28 H 0.155 0.845 29 H 0.155 0.845 30 H 0.180 0.820 31 H 0.226 0.774 32 H 0.097 0.903 33 H 0.096 0.904 34 H 0.041 0.959 35 H 0.041 0.959 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.390 -7.489 20.228 21.574 hybrid contribution 0.770 0.443 -0.055 0.890 sum 1.160 -7.045 20.173 21.400 Atomic orbital electron populations 1.22180 0.95148 1.02036 1.02726 1.20868 0.93741 0.97802 0.83675 0.89304 1.20516 0.88112 1.01977 0.98982 1.24419 0.99243 0.99989 1.04985 1.20093 0.93680 1.00005 1.03459 1.20144 0.95435 0.98877 1.01981 1.25594 1.02389 1.00830 1.06359 1.84237 0.96631 1.26870 1.55713 1.46280 1.69452 1.13645 1.09820 1.21506 0.76301 0.87584 0.84491 1.90656 1.49067 1.16390 1.84889 1.21864 1.00891 1.00999 0.93310 1.18880 0.98271 0.93322 0.89461 1.21197 1.44342 0.96308 0.94648 0.92691 1.25018 0.95580 0.94833 0.98904 1.69994 1.48146 1.08154 1.26599 0.86661 0.79358 0.79368 0.82595 1.20263 1.21297 1.20270 0.91962 0.91474 0.92548 0.90289 0.88662 0.84474 0.84480 0.82044 0.77355 0.90304 0.90376 0.95888 0.95899 0.92939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.82 9.48 37.16 0.35 -1.47 16 2 C 0.14 1.79 2.56 -67.93 -0.17 1.61 16 3 H 0.09 1.32 7.58 -51.93 -0.39 0.93 16 4 C -0.06 -0.52 5.25 -27.88 -0.15 -0.66 16 5 C -0.17 -1.84 5.49 -36.00 -0.20 -2.03 16 6 C -0.14 -1.54 10.05 -41.21 -0.41 -1.95 16 7 C -0.13 -1.42 10.18 -41.21 -0.42 -1.84 16 8 C -0.22 -2.31 11.23 29.04 0.33 -1.98 16 9 S 0.10 1.11 23.30 -107.50 -2.51 -1.39 16 10 N -0.74 -10.58 4.79 -53.80 -0.26 -10.83 16 11 C 0.51 10.07 7.79 -10.98 -0.09 9.98 16 12 O -0.53 -12.79 15.65 5.56 0.09 -12.70 16 13 C -0.13 -2.73 5.64 -27.88 -0.16 -2.89 16 14 C 0.04 1.05 4.26 -27.88 -0.12 0.93 16 15 C -0.53 -15.17 9.11 -34.44 -0.31 -15.49 16 16 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 17 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 18 N -0.89 -27.79 13.29 55.43 0.74 -27.05 16 19 Si 0.89 21.91 29.54 -169.99 -5.02 16.88 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 23 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 25 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.14 1.26 8.06 -52.49 -0.42 0.83 16 29 H 0.14 1.18 8.06 -52.49 -0.42 0.75 16 30 H 0.16 1.40 8.06 -52.49 -0.42 0.97 16 31 H 0.39 4.69 8.58 -40.82 -0.35 4.34 16 32 H 0.08 1.53 8.14 -51.93 -0.42 1.10 16 33 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 34 H 0.02 0.69 8.10 -51.93 -0.42 0.26 16 35 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 36 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 323.97 15.07 4.88 4.88 Total: -1.00 -34.36 323.97 -8.88 -43.24 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: -5.35 Total: 1.14 kcal Atomic # 6 Polarization: -12.72 SS G_CDS: -1.45 Total: -14.16 kcal Atomic # 7 Polarization: -38.37 SS G_CDS: 0.48 Total: -37.89 kcal Atomic # 8 Polarization: -12.79 SS G_CDS: 0.09 Total: -12.70 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.88 kcal Atomic # 16 Polarization: 1.11 SS G_CDS: -2.51 Total: -1.39 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -34.36 -8.88 -43.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292631919.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.075 kcal (2) G-P(sol) polarization free energy of solvation -34.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds