Wall clock time and date at job start Mon Mar 30 2020 00:26:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.46949 * 2 1 4 4 C 1.52995 * 109.47086 * 120.00137 * 2 1 3 5 5 C 1.50702 * 109.47096 * 184.99906 * 4 2 1 6 6 C 1.33381 * 125.20592 * 89.99839 * 5 4 2 7 7 C 1.38427 * 114.92374 * 179.97438 * 6 5 4 8 8 C 1.33387 * 114.91991 * 0.25034 * 7 6 5 9 9 S 1.75886 * 109.59194 * 359.63459 * 8 7 6 10 10 N 1.46502 * 109.46870 * 240.00108 * 2 1 3 11 11 C 1.34781 * 119.99672 * 84.99923 * 10 2 1 12 12 O 1.21278 * 120.00178 * 359.97438 * 11 10 2 13 13 C 1.50705 * 119.99654 * 179.97438 * 11 10 2 14 14 C 1.52998 * 109.47011 * 179.97438 * 13 11 10 15 15 C 1.50705 * 109.47011 * 179.97438 * 14 13 11 16 16 H 1.07998 * 119.99741 * 0.02562 * 15 14 13 17 17 C 1.37879 * 119.99790 * 180.02562 * 15 14 13 18 18 N 1.31515 * 119.99807 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99759 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47218 * 59.99675 * 19 17 15 21 21 H 1.48494 * 109.46917 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.46931 * 299.99516 * 19 17 15 23 23 H 1.08997 * 109.46860 * 300.00022 * 1 2 3 24 24 H 1.08999 * 109.47292 * 59.99452 * 1 2 3 25 25 H 1.08994 * 109.47427 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.46856 * 64.99851 * 4 2 1 27 27 H 1.08996 * 109.47050 * 304.99994 * 4 2 1 28 28 H 1.08002 * 122.53744 * 359.94345 * 6 5 4 29 29 H 1.08002 * 122.53759 * 179.97438 * 7 6 5 30 30 H 1.08002 * 125.20431 * 179.75072 * 8 7 6 31 31 H 0.96995 * 120.00309 * 265.00438 * 10 2 1 32 32 H 1.08997 * 109.47012 * 300.00159 * 13 11 10 33 33 H 1.09006 * 109.47078 * 60.00165 * 13 11 10 34 34 H 1.08997 * 109.47369 * 299.99948 * 14 13 11 35 35 H 1.09006 * 109.47059 * 60.00161 * 14 13 11 36 36 H 0.97006 * 119.99270 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5419 -0.6149 1.3127 6 6 4.2188 0.3637 1.9153 7 6 5.5965 0.2499 1.8439 8 6 6.0385 -0.8184 1.1787 9 16 4.6705 -1.7628 0.6039 10 7 2.0183 -0.6906 -1.1962 11 6 2.1470 -0.0182 -2.3572 12 8 1.8581 1.1585 -2.4117 13 6 2.6498 -0.7284 -3.5876 14 6 2.7005 0.2545 -4.7589 15 6 3.2039 -0.4556 -5.9892 16 1 3.4615 -1.5033 -5.9405 17 6 3.3357 0.2323 -7.1768 18 7 3.0215 1.5080 -7.2361 19 14 3.9590 -0.6481 -8.7019 20 1 3.0432 -1.7684 -9.0358 21 1 4.0083 0.3060 -9.8387 22 1 5.3205 -1.1818 -8.4435 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 1.7516 -1.7715 1.2055 27 1 1.6054 -0.2618 2.1369 28 1 3.7290 1.1832 2.4203 29 1 6.2630 0.9739 2.2890 30 1 7.0774 -1.0667 1.0191 31 1 2.2489 -1.6317 -1.1528 32 1 3.6491 -1.1202 -3.3980 33 1 1.9776 -1.5508 -3.8326 34 1 1.7010 0.6459 -4.9484 35 1 3.3725 1.0771 -4.5141 36 1 3.1146 1.9920 -8.0716 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292631919.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:26:20 Heat of formation + Delta-G solvation = -49.385074 kcal Electronic energy + Delta-G solvation = -17669.763255 eV Core-core repulsion = 14857.837854 eV Total energy + Delta-G solvation = -2811.925401 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.83389 -38.89726 -36.99958 -35.53424 -33.44726 -32.51435 -30.79490 -27.70356 -27.28146 -24.40819 -23.77158 -22.00119 -21.27057 -20.04048 -18.85487 -18.10135 -17.41375 -17.11924 -16.48984 -16.44681 -16.20044 -14.99546 -14.76190 -14.62115 -14.21108 -14.12693 -13.92962 -13.50583 -13.40505 -13.22790 -13.09311 -12.77814 -12.58876 -12.51785 -12.43325 -11.97772 -11.89347 -11.62804 -11.60987 -11.31661 -10.67354 -10.55850 -10.09137 -9.50594 -9.32873 -8.17353 -6.31612 0.10951 0.77071 1.11737 1.41947 1.46707 1.54433 1.76607 1.86678 2.29060 2.46111 3.15424 3.72229 3.88444 4.12954 4.15563 4.26455 4.40819 4.51892 4.54557 4.58886 4.68857 4.76481 4.82510 4.86831 5.02990 5.13345 5.25104 5.31050 5.42354 5.48660 5.58610 5.63632 5.65600 5.85792 6.18419 6.62656 6.86502 7.37829 7.40190 8.95202 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.021667 B = 0.004421 C = 0.003960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.979073 B = 6332.155938 C = 7069.269470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.142 3.858 3 H 0.060 0.940 4 C -0.046 4.046 5 C -0.180 4.180 6 C -0.154 4.154 7 C -0.145 4.145 8 C -0.227 4.227 9 S 0.088 5.912 10 N -0.714 5.714 11 C 0.514 3.486 12 O -0.588 6.588 13 C -0.121 4.121 14 C 0.045 3.955 15 C -0.544 4.544 16 H 0.075 0.925 17 C -0.006 4.006 18 N -0.938 5.938 19 Si 0.974 3.026 20 H -0.262 1.262 21 H -0.287 1.287 22 H -0.263 1.263 23 H 0.088 0.912 24 H 0.030 0.970 25 H 0.076 0.924 26 H 0.100 0.900 27 H 0.122 0.878 28 H 0.151 0.849 29 H 0.154 0.846 30 H 0.177 0.823 31 H 0.409 0.591 32 H 0.099 0.901 33 H 0.103 0.897 34 H -0.018 1.018 35 H -0.021 1.021 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.029 -9.615 22.216 24.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.037 3.963 3 H 0.078 0.922 4 C -0.085 4.085 5 C -0.297 4.297 6 C -0.184 4.184 7 C -0.176 4.176 8 C -0.362 4.362 9 S 0.351 5.649 10 N -0.367 5.367 11 C 0.303 3.697 12 O -0.468 6.468 13 C -0.161 4.161 14 C 0.007 3.993 15 C -0.582 4.582 16 H 0.093 0.907 17 C -0.203 4.203 18 N -0.578 5.578 19 Si 0.797 3.203 20 H -0.186 1.186 21 H -0.213 1.213 22 H -0.187 1.187 23 H 0.107 0.893 24 H 0.049 0.951 25 H 0.095 0.905 26 H 0.119 0.881 27 H 0.140 0.860 28 H 0.169 0.831 29 H 0.171 0.829 30 H 0.195 0.805 31 H 0.245 0.755 32 H 0.117 0.883 33 H 0.121 0.879 34 H 0.000 1.000 35 H -0.002 1.002 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.686 -9.985 21.271 23.508 hybrid contribution 0.688 1.238 -0.276 1.443 sum 1.373 -8.747 20.995 22.785 Atomic orbital electron populations 1.22130 0.93890 1.03225 1.02289 1.21032 0.94682 0.96637 0.83912 0.92182 1.20525 0.87032 1.03046 0.97912 1.24684 1.00063 0.99973 1.05028 1.20406 0.94039 1.00422 1.03571 1.20450 0.95859 0.99257 1.02008 1.25900 1.03162 1.00849 1.06330 1.84193 0.97245 1.27337 1.56106 1.46026 1.67544 1.14185 1.08934 1.21219 0.76080 0.86818 0.85633 1.90643 1.51719 1.18594 1.85802 1.21641 1.02916 0.99822 0.91720 1.18656 0.94682 0.93581 0.92372 1.21686 1.44054 0.97295 0.95170 0.90687 1.26136 0.95576 0.95547 1.03075 1.70181 1.49562 1.10334 1.27713 0.85375 0.79357 0.78140 0.77382 1.18627 1.21265 1.18738 0.89277 0.95084 0.90478 0.88131 0.85952 0.83142 0.82875 0.80540 0.75479 0.88262 0.87882 0.99956 1.00215 0.92865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.25 9.48 71.98 0.68 -2.56 16 2 C 0.14 3.31 2.56 44.99 0.12 3.43 16 3 H 0.06 1.79 7.58 -2.39 -0.02 1.77 16 4 C -0.05 -0.71 5.25 29.85 0.16 -0.55 16 5 C -0.18 -3.56 5.49 24.59 0.14 -3.42 16 6 C -0.15 -3.10 10.05 21.22 0.21 -2.88 16 7 C -0.15 -2.89 10.18 21.22 0.22 -2.67 16 8 C -0.23 -4.55 11.23 66.72 0.75 -3.80 16 9 S 0.09 1.77 23.30 -56.49 -1.32 0.46 16 10 N -0.71 -19.62 4.79 -442.52 -2.12 -21.74 16 11 C 0.51 20.46 7.79 87.66 0.68 21.14 16 12 O -0.59 -29.52 15.65 -3.02 -0.05 -29.57 16 13 C -0.12 -5.05 5.64 29.85 0.17 -4.88 16 14 C 0.04 2.56 4.26 29.85 0.13 2.69 16 15 C -0.54 -31.58 9.11 25.60 0.23 -31.34 16 16 H 0.08 3.96 7.74 -2.91 -0.02 3.93 16 17 C -0.01 -0.35 5.46 84.66 0.46 0.11 16 18 N -0.94 -60.39 13.29 21.45 0.28 -60.10 16 19 Si 0.97 44.80 29.54 68.60 2.03 46.83 16 20 H -0.26 -11.33 7.11 99.48 0.71 -10.63 16 21 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 22 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 23 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 24 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 25 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 26 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.15 2.50 8.06 -2.91 -0.02 2.48 16 29 H 0.15 2.41 8.06 -2.91 -0.02 2.39 16 30 H 0.18 2.82 8.06 -2.91 -0.02 2.79 16 31 H 0.41 8.77 8.58 -92.71 -0.80 7.98 16 32 H 0.10 3.72 8.14 -2.39 -0.02 3.70 16 33 H 0.10 3.77 8.14 -2.38 -0.02 3.75 16 34 H -0.02 -1.16 8.10 -2.39 -0.02 -1.18 16 35 H -0.02 -1.34 8.10 -2.38 -0.02 -1.36 16 36 H 0.26 15.85 8.31 -92.70 -0.77 15.08 16 Total: -1.00 -78.41 323.97 3.04 -75.37 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: 0.27 Total: 13.51 kcal Atomic # 6 Polarization: -28.70 SS G_CDS: 3.94 Total: -24.76 kcal Atomic # 7 Polarization: -80.01 SS G_CDS: -1.84 Total: -81.84 kcal Atomic # 8 Polarization: -29.52 SS G_CDS: -0.05 Total: -29.57 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Atomic # 16 Polarization: 1.77 SS G_CDS: -1.32 Total: 0.46 kcal Total: -78.41 3.04 -75.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292631919.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.990 kcal (2) G-P(sol) polarization free energy of solvation -78.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds