Wall clock time and date at job start Mon Mar 30 2020 00:26:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47423 * 2 1 4 4 C 1.53005 * 109.47037 * 239.99902 * 2 1 3 5 5 C 1.50702 * 109.46948 * 175.00137 * 4 2 1 6 6 C 1.33381 * 125.20534 * 90.00166 * 5 4 2 7 7 C 1.38427 * 114.92374 * 180.02562 * 6 5 4 8 8 C 1.33387 * 114.91991 * 0.25034 * 7 6 5 9 9 S 1.75886 * 109.59194 * 359.63459 * 8 7 6 10 10 N 1.46507 * 109.47031 * 120.00628 * 2 1 3 11 11 C 1.34780 * 119.99461 * 274.99616 * 10 2 1 12 12 O 1.21284 * 120.00093 * 0.02562 * 11 10 2 13 13 C 1.50698 * 120.00010 * 179.97438 * 11 10 2 14 14 C 1.52995 * 109.47310 * 180.02562 * 13 11 10 15 15 C 1.50702 * 109.47282 * 180.02562 * 14 13 11 16 16 H 1.08008 * 120.00069 * 359.97438 * 15 14 13 17 17 C 1.37876 * 120.00283 * 179.97438 * 15 14 13 18 18 N 1.31514 * 119.99636 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00110 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47085 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.46939 * 120.00061 * 19 17 15 22 22 H 1.48500 * 109.47282 * 240.00276 * 19 17 15 23 23 H 1.09003 * 109.47331 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46947 * 299.99513 * 1 2 3 25 25 H 1.08999 * 109.47021 * 59.99573 * 1 2 3 26 26 H 1.09000 * 109.46850 * 55.00378 * 4 2 1 27 27 H 1.08995 * 109.47365 * 295.00386 * 4 2 1 28 28 H 1.08001 * 122.53741 * 0.05729 * 6 5 4 29 29 H 1.08002 * 122.53759 * 179.97438 * 7 6 5 30 30 H 1.08002 * 125.20431 * 179.75072 * 8 7 6 31 31 H 0.96996 * 120.00214 * 94.99670 * 10 2 1 32 32 H 1.08994 * 109.47458 * 300.00788 * 13 11 10 33 33 H 1.09006 * 109.46321 * 60.00264 * 13 11 10 34 34 H 1.09004 * 109.47110 * 300.00030 * 14 13 11 35 35 H 1.08990 * 109.47255 * 60.00383 * 14 13 11 36 36 H 0.97007 * 119.99614 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5419 -0.6150 -1.3127 6 6 4.3978 -1.4851 -0.7748 7 6 5.7349 -1.1792 -0.9610 8 6 5.9649 -0.0577 -1.6456 9 16 4.4343 0.6761 -2.1067 10 7 2.0183 -0.6908 1.1962 11 6 2.1471 -0.0184 2.3571 12 8 1.8582 1.1583 2.4117 13 6 2.6488 -0.7290 3.5877 14 6 2.6998 0.2540 4.7591 15 6 3.2022 -0.4565 5.9895 16 1 3.4590 -1.5045 5.9410 17 6 3.3340 0.2313 7.1772 18 7 3.0218 1.5075 7.2361 19 14 3.9560 -0.6495 8.7025 20 1 4.2360 -2.0704 8.3740 21 1 5.2025 0.0032 9.1773 22 1 2.9246 -0.5815 9.7687 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 1.6054 -0.2617 -2.1370 27 1 1.7516 -1.7715 -1.2057 28 1 4.0722 -2.3623 -0.2354 29 1 6.5316 -1.7991 -0.5770 30 1 6.9415 0.3381 -1.8822 31 1 2.2490 -1.6319 1.1525 32 1 1.9760 -1.5508 3.8325 33 1 3.6480 -1.1215 3.3985 34 1 3.3726 1.0760 4.5145 35 1 1.7006 0.6461 4.9481 36 1 3.1149 1.9915 8.0716 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292631927.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:26:23 Heat of formation + Delta-G solvation = -27.600152 kcal Electronic energy + Delta-G solvation = -17673.028280 eV Core-core repulsion = 14862.047544 eV Total energy + Delta-G solvation = -2810.980736 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.43066 -37.96670 -35.78508 -33.40566 -31.99930 -30.84407 -29.77443 -26.47238 -25.67902 -23.36855 -22.19055 -20.71312 -19.87679 -19.09242 -17.30205 -16.81902 -15.97205 -15.63122 -15.49155 -14.78525 -14.41379 -13.77492 -13.67308 -13.37151 -13.06570 -12.74205 -12.67647 -12.37474 -12.15563 -11.96418 -11.68183 -11.59921 -11.11363 -11.04496 -10.92043 -10.81436 -10.55746 -9.92125 -9.62316 -9.12133 -8.95067 -8.80022 -8.66407 -8.51240 -8.29659 -5.93730 -3.97848 0.92395 1.55397 1.92027 2.68974 3.33545 3.34331 3.40724 3.44020 3.60081 4.49514 4.53405 4.78194 4.97676 5.04264 5.21827 5.38144 5.41315 5.48500 5.52099 5.58179 5.63444 5.74100 6.01190 6.10589 6.19938 6.25175 6.28577 6.30210 6.40980 6.84222 6.94409 7.77651 7.90370 7.97050 8.10512 8.42103 8.86832 9.11343 9.65581 11.17319 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.022517 B = 0.004215 C = 0.003827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.219688 B = 6641.592147 C = 7315.268128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.145 3.855 3 H 0.087 0.913 4 C -0.056 4.056 5 C -0.168 4.168 6 C -0.136 4.136 7 C -0.130 4.130 8 C -0.217 4.217 9 S 0.091 5.909 10 N -0.736 5.736 11 C 0.512 3.488 12 O -0.535 6.535 13 C -0.130 4.130 14 C 0.037 3.963 15 C -0.525 4.525 16 H 0.056 0.944 17 C 0.058 3.942 18 N -0.890 5.890 19 Si 0.892 3.108 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.284 1.284 23 H 0.056 0.944 24 H 0.066 0.934 25 H 0.061 0.939 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.138 0.862 29 H 0.139 0.861 30 H 0.161 0.839 31 H 0.394 0.606 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.023 0.977 35 H 0.023 0.977 36 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.735 -7.136 -21.321 22.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.040 3.960 3 H 0.105 0.895 4 C -0.096 4.096 5 C -0.285 4.285 6 C -0.166 4.166 7 C -0.161 4.161 8 C -0.352 4.352 9 S 0.354 5.646 10 N -0.390 5.390 11 C 0.300 3.700 12 O -0.411 6.411 13 C -0.170 4.170 14 C 0.000 4.000 15 C -0.564 4.564 16 H 0.074 0.926 17 C -0.144 4.144 18 N -0.529 5.529 19 Si 0.720 3.280 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.210 1.210 23 H 0.075 0.925 24 H 0.085 0.915 25 H 0.080 0.920 26 H 0.105 0.895 27 H 0.105 0.895 28 H 0.155 0.845 29 H 0.157 0.843 30 H 0.179 0.821 31 H 0.228 0.772 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.041 0.959 35 H 0.041 0.959 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.137 -4.803 -21.959 22.479 hybrid contribution 1.011 -2.111 1.663 2.872 sum 1.148 -6.915 -20.296 21.472 Atomic orbital electron populations 1.22184 0.95165 1.02059 1.02712 1.20840 0.93719 0.97698 0.83780 0.89509 1.20506 0.88148 1.02382 0.98563 1.24401 0.99347 0.99141 1.05647 1.20079 0.92338 1.01459 1.02693 1.20180 0.97130 0.97809 1.00969 1.25566 1.01148 1.00782 1.07724 1.84245 0.97782 1.27390 1.55149 1.46222 1.69394 1.13682 1.09664 1.21504 0.76356 0.87604 0.84527 1.90660 1.49069 1.16415 1.84906 1.21849 1.00807 1.00978 0.93343 1.18888 0.98294 0.93345 0.89499 1.21269 1.44172 0.96327 0.94610 0.92604 1.25023 0.95592 0.94830 0.98939 1.70014 1.48305 1.08138 1.26408 0.86548 0.78503 0.79768 0.83223 1.19761 1.21037 1.21022 0.92489 0.91476 0.92010 0.89489 0.89459 0.84459 0.84334 0.82097 0.77226 0.90399 0.90409 0.95890 0.95875 0.93042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.83 9.48 37.16 0.35 -1.47 16 2 C 0.15 1.79 2.56 -67.92 -0.17 1.62 16 3 H 0.09 1.31 7.58 -51.93 -0.39 0.92 16 4 C -0.06 -0.51 5.25 -27.88 -0.15 -0.66 16 5 C -0.17 -1.81 5.52 -36.00 -0.20 -2.01 16 6 C -0.14 -1.44 9.85 -41.21 -0.41 -1.85 16 7 C -0.13 -1.38 10.18 -41.21 -0.42 -1.80 16 8 C -0.22 -2.27 11.23 29.04 0.33 -1.95 16 9 S 0.09 0.99 23.33 -107.50 -2.51 -1.52 16 10 N -0.74 -10.26 4.66 -53.80 -0.25 -10.51 16 11 C 0.51 9.95 7.79 -10.99 -0.09 9.86 16 12 O -0.54 -12.79 15.65 5.55 0.09 -12.70 16 13 C -0.13 -2.68 5.64 -27.89 -0.16 -2.84 16 14 C 0.04 1.02 4.26 -27.88 -0.12 0.90 16 15 C -0.53 -15.09 9.11 -34.44 -0.31 -15.41 16 16 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 17 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 18 N -0.89 -27.75 13.29 55.43 0.74 -27.02 16 19 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 20 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 21 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 23 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.14 1.23 8.06 -52.49 -0.42 0.80 16 29 H 0.14 1.23 8.06 -52.49 -0.42 0.80 16 30 H 0.16 1.35 8.06 -52.49 -0.42 0.93 16 31 H 0.39 4.36 8.56 -40.82 -0.35 4.01 16 32 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 33 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 34 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 35 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 36 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 323.68 15.07 4.88 4.88 Total: -1.00 -34.50 323.68 -8.87 -43.37 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: -5.35 Total: 0.68 kcal Atomic # 6 Polarization: -12.57 SS G_CDS: -1.44 Total: -14.01 kcal Atomic # 7 Polarization: -38.01 SS G_CDS: 0.49 Total: -37.53 kcal Atomic # 8 Polarization: -12.79 SS G_CDS: 0.09 Total: -12.70 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Atomic # 16 Polarization: 0.99 SS G_CDS: -2.51 Total: -1.52 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -34.50 -8.87 -43.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292631927.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.768 kcal (2) G-P(sol) polarization free energy of solvation -34.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds