Wall clock time and date at job start Mon Mar 30 2020 00:26:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47423 * 2 1 4 4 C 1.53005 * 109.47037 * 239.99902 * 2 1 3 5 5 C 1.50702 * 109.46948 * 175.00137 * 4 2 1 6 6 C 1.33381 * 125.20534 * 90.00166 * 5 4 2 7 7 C 1.38427 * 114.92374 * 180.02562 * 6 5 4 8 8 C 1.33387 * 114.91991 * 0.25034 * 7 6 5 9 9 S 1.75886 * 109.59194 * 359.63459 * 8 7 6 10 10 N 1.46507 * 109.47031 * 120.00628 * 2 1 3 11 11 C 1.34780 * 119.99461 * 274.99616 * 10 2 1 12 12 O 1.21284 * 120.00093 * 0.02562 * 11 10 2 13 13 C 1.50698 * 120.00010 * 179.97438 * 11 10 2 14 14 C 1.52995 * 109.47310 * 180.02562 * 13 11 10 15 15 C 1.50702 * 109.47282 * 180.02562 * 14 13 11 16 16 H 1.08008 * 120.00069 * 359.97438 * 15 14 13 17 17 C 1.37876 * 120.00283 * 179.97438 * 15 14 13 18 18 N 1.31514 * 119.99636 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00110 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47085 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.46939 * 120.00061 * 19 17 15 22 22 H 1.48500 * 109.47282 * 240.00276 * 19 17 15 23 23 H 1.09003 * 109.47331 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46947 * 299.99513 * 1 2 3 25 25 H 1.08999 * 109.47021 * 59.99573 * 1 2 3 26 26 H 1.09000 * 109.46850 * 55.00378 * 4 2 1 27 27 H 1.08995 * 109.47365 * 295.00386 * 4 2 1 28 28 H 1.08001 * 122.53741 * 0.05729 * 6 5 4 29 29 H 1.08002 * 122.53759 * 179.97438 * 7 6 5 30 30 H 1.08002 * 125.20431 * 179.75072 * 8 7 6 31 31 H 0.96996 * 120.00214 * 94.99670 * 10 2 1 32 32 H 1.08994 * 109.47458 * 300.00788 * 13 11 10 33 33 H 1.09006 * 109.46321 * 60.00264 * 13 11 10 34 34 H 1.09004 * 109.47110 * 300.00030 * 14 13 11 35 35 H 1.08990 * 109.47255 * 60.00383 * 14 13 11 36 36 H 0.97007 * 119.99614 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5419 -0.6150 -1.3127 6 6 4.3978 -1.4851 -0.7748 7 6 5.7349 -1.1792 -0.9610 8 6 5.9649 -0.0577 -1.6456 9 16 4.4343 0.6761 -2.1067 10 7 2.0183 -0.6908 1.1962 11 6 2.1471 -0.0184 2.3571 12 8 1.8582 1.1583 2.4117 13 6 2.6488 -0.7290 3.5877 14 6 2.6998 0.2540 4.7591 15 6 3.2022 -0.4565 5.9895 16 1 3.4590 -1.5045 5.9410 17 6 3.3340 0.2313 7.1772 18 7 3.0218 1.5075 7.2361 19 14 3.9560 -0.6495 8.7025 20 1 4.2360 -2.0704 8.3740 21 1 5.2025 0.0032 9.1773 22 1 2.9246 -0.5815 9.7687 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 1.6054 -0.2617 -2.1370 27 1 1.7516 -1.7715 -1.2057 28 1 4.0722 -2.3623 -0.2354 29 1 6.5316 -1.7991 -0.5770 30 1 6.9415 0.3381 -1.8822 31 1 2.2490 -1.6319 1.1525 32 1 1.9760 -1.5508 3.8325 33 1 3.6480 -1.1215 3.3985 34 1 3.3726 1.0760 4.5145 35 1 1.7006 0.6461 4.9481 36 1 3.1149 1.9915 8.0716 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292631927.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:26:22 Heat of formation + Delta-G solvation = -50.016365 kcal Electronic energy + Delta-G solvation = -17674.000320 eV Core-core repulsion = 14862.047544 eV Total energy + Delta-G solvation = -2811.952776 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.83394 -38.89484 -36.94133 -35.53083 -33.44352 -32.49737 -30.82980 -27.69132 -27.26118 -24.43384 -23.74306 -21.95413 -21.30987 -20.03238 -18.81237 -18.11636 -17.46235 -17.03318 -16.49662 -16.33539 -16.31283 -14.97777 -14.74198 -14.63123 -14.23068 -14.10429 -13.94316 -13.46765 -13.39052 -13.21445 -13.09957 -12.84259 -12.58533 -12.46109 -12.39664 -11.99832 -11.90164 -11.62250 -11.61678 -11.27420 -10.65541 -10.57721 -10.04204 -9.50800 -9.35911 -8.17674 -6.31792 0.11926 0.76467 1.12731 1.42248 1.43827 1.57114 1.78750 1.89551 2.30778 2.46442 3.15495 3.71866 3.88687 4.14327 4.22037 4.28245 4.37408 4.50138 4.56089 4.58645 4.69561 4.77942 4.82991 4.88114 5.05013 5.15819 5.24764 5.30430 5.43147 5.49523 5.61527 5.64146 5.67130 5.86350 6.18418 6.68945 6.87225 7.38398 7.43859 8.95378 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.022517 B = 0.004215 C = 0.003827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.219688 B = 6641.592147 C = 7315.268128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.144 3.856 3 H 0.053 0.947 4 C -0.046 4.046 5 C -0.179 4.179 6 C -0.143 4.143 7 C -0.143 4.143 8 C -0.225 4.225 9 S 0.064 5.936 10 N -0.709 5.709 11 C 0.512 3.488 12 O -0.591 6.591 13 C -0.119 4.119 14 C 0.043 3.957 15 C -0.541 4.541 16 H 0.076 0.924 17 C -0.007 4.007 18 N -0.939 5.939 19 Si 0.974 3.026 20 H -0.252 1.252 21 H -0.281 1.281 22 H -0.280 1.280 23 H 0.080 0.920 24 H 0.029 0.971 25 H 0.084 0.916 26 H 0.106 0.894 27 H 0.117 0.883 28 H 0.158 0.842 29 H 0.155 0.845 30 H 0.177 0.823 31 H 0.414 0.586 32 H 0.104 0.896 33 H 0.101 0.899 34 H -0.022 1.022 35 H -0.019 1.019 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.106 -10.303 -21.971 24.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.038 3.962 3 H 0.071 0.929 4 C -0.085 4.085 5 C -0.296 4.296 6 C -0.173 4.173 7 C -0.173 4.173 8 C -0.360 4.360 9 S 0.328 5.672 10 N -0.362 5.362 11 C 0.301 3.699 12 O -0.471 6.471 13 C -0.159 4.159 14 C 0.005 3.995 15 C -0.579 4.579 16 H 0.094 0.906 17 C -0.205 4.205 18 N -0.579 5.579 19 Si 0.798 3.202 20 H -0.175 1.175 21 H -0.207 1.207 22 H -0.206 1.206 23 H 0.099 0.901 24 H 0.049 0.951 25 H 0.103 0.897 26 H 0.124 0.876 27 H 0.135 0.865 28 H 0.175 0.825 29 H 0.173 0.827 30 H 0.194 0.806 31 H 0.251 0.749 32 H 0.122 0.878 33 H 0.119 0.881 34 H -0.003 1.003 35 H 0.000 1.000 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.511 -8.037 -22.665 24.053 hybrid contribution 0.905 -1.101 1.795 2.291 sum 1.415 -9.138 -20.871 22.827 Atomic orbital electron populations 1.22135 0.93980 1.03392 1.02085 1.20962 0.94599 0.96370 0.84218 0.92884 1.20504 0.87070 1.03795 0.97125 1.24648 1.00204 0.98858 1.05919 1.20403 0.92353 1.02040 1.02520 1.20503 0.97861 0.98028 1.00917 1.25863 1.01556 1.00877 1.07726 1.84330 0.98835 1.28344 1.55736 1.45925 1.67397 1.14359 1.08537 1.21255 0.76121 0.86817 0.85747 1.90649 1.51828 1.18792 1.85859 1.21618 1.02982 0.99729 0.91558 1.18671 0.94626 0.93646 0.92518 1.21752 1.43779 0.97290 0.95091 0.90569 1.26145 0.95626 0.95544 1.03138 1.70196 1.49764 1.10359 1.27596 0.85269 0.77666 0.79239 0.78042 1.17500 1.20688 1.20588 0.90088 0.95124 0.89691 0.87615 0.86475 0.82464 0.82750 0.80592 0.74930 0.87769 0.88128 1.00316 1.00049 0.92896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.28 9.48 71.98 0.68 -2.60 16 2 C 0.14 3.34 2.56 44.99 0.12 3.45 16 3 H 0.05 1.63 7.58 -2.39 -0.02 1.61 16 4 C -0.05 -0.70 5.25 29.85 0.16 -0.54 16 5 C -0.18 -3.49 5.52 24.59 0.14 -3.35 16 6 C -0.14 -2.68 9.85 21.22 0.21 -2.47 16 7 C -0.14 -2.76 10.18 21.22 0.22 -2.54 16 8 C -0.23 -4.48 11.23 66.72 0.75 -3.73 16 9 S 0.06 1.36 23.33 -56.49 -1.32 0.04 16 10 N -0.71 -18.56 4.66 -442.51 -2.06 -20.62 16 11 C 0.51 20.03 7.79 87.66 0.68 20.71 16 12 O -0.59 -29.71 15.65 -3.04 -0.05 -29.76 16 13 C -0.12 -4.85 5.64 29.85 0.17 -4.68 16 14 C 0.04 2.44 4.26 29.85 0.13 2.57 16 15 C -0.54 -31.17 9.11 25.60 0.23 -30.94 16 16 H 0.08 3.99 7.74 -2.91 -0.02 3.96 16 17 C -0.01 -0.43 5.46 84.65 0.46 0.03 16 18 N -0.94 -60.40 13.29 21.45 0.28 -60.11 16 19 Si 0.97 44.63 29.54 68.60 2.03 46.66 16 20 H -0.25 -10.58 7.11 99.48 0.71 -9.87 16 21 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 22 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 23 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 24 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.12 1.15 8.14 -2.39 -0.02 1.14 16 28 H 0.16 2.21 8.06 -2.91 -0.02 2.18 16 29 H 0.15 2.39 8.06 -2.91 -0.02 2.36 16 30 H 0.18 2.77 8.06 -2.91 -0.02 2.75 16 31 H 0.41 7.70 8.56 -92.71 -0.79 6.91 16 32 H 0.10 3.69 8.14 -2.39 -0.02 3.67 16 33 H 0.10 3.63 8.14 -2.38 -0.02 3.61 16 34 H -0.02 -1.40 8.10 -2.39 -0.02 -1.42 16 35 H -0.02 -1.22 8.10 -2.39 -0.02 -1.24 16 36 H 0.26 15.74 8.31 -92.70 -0.77 14.97 16 Total: -1.00 -79.39 323.68 3.09 -76.30 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: 0.27 Total: 11.57 kcal Atomic # 6 Polarization: -28.02 SS G_CDS: 3.94 Total: -24.08 kcal Atomic # 7 Polarization: -78.96 SS G_CDS: -1.78 Total: -80.73 kcal Atomic # 8 Polarization: -29.71 SS G_CDS: -0.05 Total: -29.76 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Atomic # 16 Polarization: 1.36 SS G_CDS: -1.32 Total: 0.04 kcal Total: -79.39 3.09 -76.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292631927.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.282 kcal (2) G-P(sol) polarization free energy of solvation -79.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds